Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003609

Physical Location & Seq

Genomic Coordinates Forward (+)

80195348 .. 80199615

Gene Structure 4268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00058360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGAAACGGTCATTTCCTCTCAAGATTAAATTCTCTTCATCCCCTAACTCACCGAAAATGGAGCTCTATTCCGGCACGGTAGCAGCAGCAACCCCAACCTCACCCGGCCGCTACTTGACTCCTCTCCACTCTCAACCCCACACACCCAAACCCAAACCCCCCAACTTTGCCATGAACTCCCTCTTCCGATCAACACCCTTAACCAAACGTCTCTCATTTCGTCCCTTACAATCCCACTACTCCACCACCACCCCCACTAAACCCAAAACCCCAAACACCTACACCATCACCACCCCTCGTTTCACTCCAAAGTCCCCACCGCCCACCAAGCCCAACTTCCCTCGCCCCACTGAAGTCCCCTTCCAGCCCAAAGTCGCCAACTCCGTCCGCCTCATCGGCCACGTCCGCACGCCGCTTCAGGTCCAGACTACCCCAGATGGAGCTTTCTGGGCCGCCACTGTTCTCACCGCGTTTTCTTCTTCTTCTTCGTCCAAGTCGCTCCGGATTCCGATTATTTTCGAGGGGGACTTGGCTCACATTGCGAGTTTACATGTGAAAGACGGTGATTATGTGTTTGTTGCTGGGAATTTGAGGTCGGATTTGAATCATCTTAATGCTACTGAGGGTCAGGCTCCTTTGCAGGTCAGGTTTGAACAGGTTCATTATGCCATTGCACTGGTCAAGGTTTATAGTGCTTCAGCTGTAGAAAGAGAAATTATTGTAAAGCGAAATCACCCTGATTTCAAGCGTAAGGATGGTGGTCATGCACTCTGGCTTAACAAGGTACCGCAGTGGGTTTTGTCAGAGCTTAAAGGCATGGAGTTTGATGTTCCAATTCTGAAGCCCAAACAAGCAAATGAGGGTAGAGGTGATAAATCCTGGAAGGACTTGGTGGAAAACCCAGATAAATGGTGGGATAACAGATTGCAGAAGCGGAACGCAAAAGCTCCAGACTTTAAGCACAAAGAAACTGGTGAAGCGCTGTGGCTTAACAGTTCACCGGCATGGGCGATCCCCATGTTGCCACCTTTGAAAACACAGCAAAATATGACTACTGACGATAGGAATACACCTCTTCCTCGAAACATGGAAGCATCCGTTAGTGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0009295 GO:0009508 GO:0009532 GO:0009536 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

370

Amino Acids

41.42

Weight (kDa)

10.06

Isoelectric Point (pI)

46.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31010 AT4G20010 AT4G20010 AT5G44785 AT5G44785
fragaria_vesca	FvH4_3g12060 FvH4_3g12060 FvH4_3g12060
malus_domestica	MD05G1254900.v1.1 MD10G1235000.v1.1
prunus_persica	Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1
pyrus_communis	pycom05g23290
rosa_chinensis	RchiOBHm_Chr2g0098041 RchiOBHm_Chr5g0019771
rosa_laevigata	RLG00000032467
rosa_multiflora	Rmu_sc0014160.1_g000001 Rmu_sc0039603.1_g000001 Rmu_ssc0000062.1_g000028
rosa_roxburghii	Rroxscaffold_1G00058360
rosa_rugosa	Rorug05G0053800 Rorug05G0053900
rosa_samantha	Rh2DG121400 Rh5AG144300 Rh5BG143000 Rh5BG296500 Rh5CG154800 Rh5DG143300 Rh5DG306000 Rh6AG080900 Rh7AG221200 Rh7DG348200
rosa_wichuraiana	Rw4G019420 Rw5G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	631
Acc65I	GGTACC	1 cut(s)	784
AccB1I	GGYRCC	1 cut(s)	784
AccII	CGCG	1 cut(s)	470
AccIII	TCCGGA	1 cut(s)	501
AciI	CCGC	9 cut(s)	109, 320, 388, 406, 413, 453, 468, 788, 934
AclWI	GGATC	1 cut(s)	1006
AcoI	YGGCCR	2 cut(s)	106, 397
AcsI	RAATTY	2 cut(s)	29, 586
AcuI	CTGAAG	4 cut(s)	372, 401, 681, 860
AfaI	GTAC	1 cut(s)	786
AfeI	AGCGCT	1 cut(s)	981
AflIII	ACRYGT	1 cut(s)	550
AgsI	TTSAA	4 cut(s)	604, 653, 745, 1033
AjiI	CACGTC	1 cut(s)	403
AjnI	CCWGG	1 cut(s)	878
AjuI	GAANNNNNNNTTGG	2 cut(s)	320, 352
AluBI	AGCT	5 cut(s)	64, 443, 701, 808, 947
AluI	AGCT	5 cut(s)	64, 443, 701, 808, 947
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	1 cut(s)	1006
Aor13HI	TCCGGA	1 cut(s)	501
Aor51HI	AGCGCT	1 cut(s)	981
AoxI	GGCC	3 cut(s)	106, 397, 450
ApeKI	GCWGC	2 cut(s)	83, 86
ApoI	RAATTY	2 cut(s)	29, 586
Asp700I	GAANNNNTTC	1 cut(s)	657
Asp718I	GGTACC	1 cut(s)	784
AspLEI	GCGC	1 cut(s)	982
AspS9I	GGNCC	2 cut(s)	421, 450
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	9 cut(s)	42, 93, 280, 457, 575, 725, 881, 986, 990
AvaII	GGWCC	1 cut(s)	421
BaeI	ACNNNNGTAYC	2 cut(s)	776, 809
BanI	GGYRCC	1 cut(s)	784
BanII	GRGCYC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	2 cut(s)	95, 98
BccI	CCATC	3 cut(s)	293, 431, 749
BciT130I	CCWGG	1 cut(s)	880
BcnI	CCSGG	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	215
BfmI	CTRYAG	1 cut(s)	702
BfoI	RGCGCY	1 cut(s)	983
BfuAI	ACCTGC	1 cut(s)	631
BglI	GCCNNNNNGGC	1 cut(s)	396
BisI	GCNGC	5 cut(s)	84, 87, 109, 413, 453
BlsI	GCNGC	5 cut(s)	85, 88, 110, 414, 454
Bme1390I	CCNGG	2 cut(s)	105, 880
Bme18I	GGWCC	1 cut(s)	421
BmgBI	CACGTC	1 cut(s)	403
BmgT120I	GGNCC	2 cut(s)	421, 450
BmiI	GGNNCC	2 cut(s)	633, 786
BmrFI	CCNGG	2 cut(s)	105, 880
BmsI	GCATC	1 cut(s)	1103
BpmI	CTGGAG	1 cut(s)	933
BpuEI	CTTGAG	1 cut(s)	5
BpuMI	CCSGG	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	603
BsaWI	WCCGGW	1 cut(s)	501
Bse118I	RCCGGY	1 cut(s)	1000
Bse1I	ACTGG	2 cut(s)	681, 976
Bse3DI	GCAATG	2 cut(s)	537, 669
Bse8I	GATNNNNATC	1 cut(s)	603
BseAI	TCCGGA	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	880
BseGI	GGATG	3 cut(s)	38, 760, 1094
BseJI	GATNNNNATC	1 cut(s)	603
BseMI	GCAATG	2 cut(s)	537, 669
BseMII	CTCAG	1 cut(s)	612
BseNI	ACTGG	2 cut(s)	681, 976
BseRI	GAGGAG	1 cut(s)	111
BseX3I	CGGCCG	1 cut(s)	106
BseXI	GCAGC	2 cut(s)	95, 98
BseYI	CCCAGC	1 cut(s)	581
Bsh1236I	CGCG	1 cut(s)	470
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	3 cut(s)	108, 399, 452
BshNI	GGYRCC	1 cut(s)	784
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	4 cut(s)	72, 105, 502, 1001
BslFI	GGGAC	4 cut(s)	207, 298, 341, 539
BsmAI	GTCTC	1 cut(s)	215
BsmBI	CGTCTC	1 cut(s)	215
BsmFI	GGGAC	4 cut(s)	207, 298, 341, 539
BsnI	GGCC	3 cut(s)	108, 399, 452
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp13I	TCCGGA	1 cut(s)	501
Bsp143I	GATC	2 cut(s)	188, 1011
BspACI	CCGC	9 cut(s)	109, 320, 388, 406, 413, 453, 468, 788, 934
BspANI	GGCC	3 cut(s)	108, 399, 452
BspCNI	CTCAG	1 cut(s)	613
BspEI	TCCGGA	1 cut(s)	501
BspFNI	CGCG	1 cut(s)	470
BspLI	GGNNCC	2 cut(s)	633, 786
BspMI	ACCTGC	1 cut(s)	631
BspPI	GGATC	1 cut(s)	1006
BspT107I	GGYRCC	1 cut(s)	784
BsrDI	GCAATG	2 cut(s)	537, 669
BsrFI	RCCGGY	1 cut(s)	1000
BsrI	ACTGG	2 cut(s)	681, 976
BssAI	RCCGGY	1 cut(s)	1000
BssMI	GATC	2 cut(s)	188, 1011
Bst2UI	CCWGG	1 cut(s)	880
Bst4CI	ACNGT	5 cut(s)	9, 79, 460, 563, 995
Bst6I	CTCTTC	3 cut(s)	40, 188, 1080
BstC8I	GCNNGC	1 cut(s)	410
BstDEI	CTNAG	1 cut(s)	621
BstF5I	GGATG	3 cut(s)	38, 760, 1094
BstFNI	CGCG	1 cut(s)	470
BstH2I	RGCGCY	1 cut(s)	983
BstHHI	GCGC	1 cut(s)	982
BstKTI	GATC	2 cut(s)	191, 1014
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	2 cut(s)	188, 1011
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	5 cut(s)	328, 396, 405, 449, 539
BstNI	CCWGG	1 cut(s)	880
BstNSI	RCATGY	1 cut(s)	554
BstSCI	CCNGG	2 cut(s)	103, 878
BstSFI	CTRYAG	1 cut(s)	702
BstUI	CGCG	1 cut(s)	470
BstV1I	GCAGC	2 cut(s)	95, 98
BstXI	CCANNNNNNTGG	2 cut(s)	676, 909
BstZI	CGGCCG	1 cut(s)	106
BsuRI	GGCC	3 cut(s)	108, 399, 452
BtrI	CACGTC	1 cut(s)	403
BtsCI	GGATG	3 cut(s)	38, 760, 1094
BtsI	GCAGTG	1 cut(s)	797
BtsIMutI	CAGTG	4 cut(s)	348, 456, 674, 797
BveI	ACCTGC	1 cut(s)	631
Cac8I	GCNNGC	1 cut(s)	410
CfoI	GCGC	1 cut(s)	982
Cfr10I	RCCGGY	1 cut(s)	1000
Cfr13I	GGNCC	2 cut(s)	421, 450
Csp6I	GTAC	1 cut(s)	785
CviAII	CATG	7 cut(s)	172, 551, 764, 817, 1005, 1018, 1087
CviQI	GTAC	1 cut(s)	785
DdeI	CTNAG	1 cut(s)	621
DpnI	GATC	2 cut(s)	190, 1013
DpnII	GATC	2 cut(s)	188, 1011
EaeI	YGGCCR	2 cut(s)	106, 397
EagI	CGGCCG	1 cut(s)	106
Eam1104I	CTCTTC	3 cut(s)	40, 188, 1080
EarI	CTCTTC	3 cut(s)	40, 188, 1080
EciI	GGCGGA	1 cut(s)	377
Ecl136II	GAGCTC	1 cut(s)	64
EclXI	CGGCCG	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	421
Eco47III	AGCGCT	1 cut(s)	981
Eco52I	CGGCCG	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	64
Eco57I	CTGAAG	4 cut(s)	372, 401, 681, 860
EcoICRI	GAGCTC	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	878
EcoT38I	GRGCYC	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	7 cut(s)	175, 554, 767, 820, 1008, 1021, 1090
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FaqI	GGGAC	4 cut(s)	207, 298, 341, 539
FatI	CATG	7 cut(s)	171, 550, 763, 816, 1004, 1017, 1086
Fnu4HI	GCNGC	5 cut(s)	84, 87, 109, 413, 453
FokI	GGATG	3 cut(s)	25, 767, 1081
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	5 cut(s)	84, 87, 109, 413, 453
GlaI	GCGC	1 cut(s)	981
GluI	GCNGC	5 cut(s)	84, 87, 109, 413, 453
GsaI	CCCAGC	1 cut(s)	585
GsuI	CTGGAG	1 cut(s)	933
HaeII	RGCGCY	1 cut(s)	983
HaeIII	GGCC	3 cut(s)	108, 399, 452
HapII	CCGG	4 cut(s)	72, 105, 502, 1001
HhaI	GCGC	1 cut(s)	982
Hin1II	CATG	7 cut(s)	175, 554, 767, 820, 1008, 1021, 1090
Hin6I	GCGC	1 cut(s)	980
HinP1I	GCGC	1 cut(s)	980
HinfI	GANTC	3 cut(s)	118, 505, 604
HpaII	CCGG	4 cut(s)	72, 105, 502, 1001
HphI	GGTGA	9 cut(s)	42, 93, 280, 457, 575, 725, 881, 986, 990
Hpy166II	GTNNAC	2 cut(s)	548, 998
Hpy188I	TCNGA	5 cut(s)	188, 510, 598, 805, 840
Hpy188III	TCNNGA	4 cut(s)	22, 424, 502, 950
Hpy8I	GTNNAC	2 cut(s)	548, 998
HpyAV	CCTTC	2 cut(s)	370, 877
HpyCH4III	ACNGT	5 cut(s)	9, 79, 460, 563, 995
HpyCH4IV	ACGT	2 cut(s)	208, 402
HpyCH4V	TGCA	4 cut(s)	640, 674, 767, 928
HpyF10VI	GCNNNNNNNGC	5 cut(s)	328, 396, 405, 449, 539
HpyF3I	CTNAG	1 cut(s)	621
HpySE526I	ACGT	2 cut(s)	208, 402
Hsp92II	CATG	7 cut(s)	175, 554, 767, 820, 1008, 1021, 1090
HspAI	GCGC	1 cut(s)	980
Kpn2I	TCCGGA	1 cut(s)	501
KpnI	GGTACC	1 cut(s)	788
Kzo9I	GATC	2 cut(s)	188, 1011
LmnI	GCTCC	5 cut(s)	61, 440, 504, 637, 952
Lsp1109I	GCAGC	2 cut(s)	95, 98
LweI	GCATC	1 cut(s)	1103
MaeII	ACGT	2 cut(s)	208, 402
MalI	GATC	2 cut(s)	190, 1013
MboI	GATC	2 cut(s)	188, 1011
MboII	GAAGA	7 cut(s)	27, 175, 468, 471, 474, 477, 1067
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	4 cut(s)	29, 586, 714, 834
MlyI	GAGTC	1 cut(s)	112
MmeI	TCCRAC	1 cut(s)	576
MroI	TCCGGA	1 cut(s)	501
MroXI	GAANNNNTTC	1 cut(s)	657
MseI	TTAA	7 cut(s)	27, 200, 612, 777, 810, 957, 990
MslI	CAYNNNNRTG	2 cut(s)	612, 1003
MspA1I	CMGCKG	1 cut(s)	701
MspI	CCGG	4 cut(s)	72, 105, 502, 1001
MspR9I	CCNGG	2 cut(s)	105, 880
MvaI	CCWGG	1 cut(s)	880
MvnI	CGCG	1 cut(s)	470
MwoI	GCNNNNNNNGC	5 cut(s)	328, 396, 405, 449, 539
NciI	CCSGG	1 cut(s)	105
NdeII	GATC	2 cut(s)	188, 1011
NlaIII	CATG	7 cut(s)	175, 554, 767, 820, 1008, 1021, 1090
NlaIV	GGNNCC	2 cut(s)	633, 786
NspI	RCATGY	1 cut(s)	554
PciI	ACATGT	1 cut(s)	550
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	657
PfeI	GAWTC	2 cut(s)	505, 604
PfoI	TCCNGGA	1 cut(s)	878
PkrI	GCNGC	5 cut(s)	85, 88, 110, 414, 454
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PscI	ACATGT	1 cut(s)	550
Psp124BI	GAGCTC	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	878
PspFI	CCCAGC	1 cut(s)	581
PspGI	CCWGG	1 cut(s)	878
PspN4I	GGNNCC	2 cut(s)	633, 786
PspPI	GGNCC	2 cut(s)	421, 450
PvuII	CAGCTG	1 cut(s)	701
RsaI	GTAC	1 cut(s)	786
RsaNI	GTAC	1 cut(s)	785
RseI	CAYNNNNRTG	2 cut(s)	612, 1003
SacI	GAGCTC	1 cut(s)	66
SaqAI	TTAA	7 cut(s)	27, 200, 612, 777, 810, 957, 990
SatI	GCNGC	5 cut(s)	84, 87, 109, 413, 453
Sau3AI	GATC	2 cut(s)	188, 1011
Sau96I	GGNCC	2 cut(s)	421, 450
SchI	GAGTC	1 cut(s)	112
ScrFI	CCNGG	2 cut(s)	105, 880
SduI	GDGCHC	1 cut(s)	66
SfaNI	GCATC	1 cut(s)	1103
SfcI	CTRYAG	1 cut(s)	702
SinI	GGWCC	1 cut(s)	421
SmiMI	CAYNNNNRTG	2 cut(s)	612, 1003
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	4 cut(s)	29, 586, 714, 834
SsiI	CCGC	9 cut(s)	109, 320, 388, 406, 413, 453, 468, 788, 934
SstI	GAGCTC	1 cut(s)	66
StyD4I	CCNGG	2 cut(s)	103, 878
TaaI	ACNGT	5 cut(s)	9, 79, 460, 563, 995
TaiI	ACGT	2 cut(s)	211, 405
TaqI	TCGA	2 cut(s)	519, 1081
TasI	AATT	4 cut(s)	29, 586, 714, 834
TauI	GCSGC	3 cut(s)	111, 415, 455
TfiI	GAWTC	2 cut(s)	505, 604
Tru1I	TTAA	7 cut(s)	27, 200, 612, 777, 810, 957, 990
Tru9I	TTAA	7 cut(s)	27, 200, 612, 777, 810, 957, 990
TscAI	CASTG	4 cut(s)	355, 463, 681, 797
TseI	GCWGC	2 cut(s)	83, 86
TspDTI	ATGAA	4 cut(s)	17, 27, 188, 650
TspGWI	ACGGA	2 cut(s)	373, 1087
TspRI	CASTG	4 cut(s)	355, 463, 681, 797
VpaK11BI	GGWCC	1 cut(s)	421
XapI	RAATTY	2 cut(s)	29, 586
XceI	RCATGY	1 cut(s)	554
XcmI	CCANNNNNNNNNTGG	1 cut(s)	909
XmnI	GAANNNNTTC	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.