Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003609

Physical Location & Seq

Genomic Coordinates Forward (+)

20588369 .. 20592227

Gene Structure 3859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG221200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTTCCAGCTCCACTTCCTGGGTTCACTGACAGCGAAATGGATCCAACATAAGTTAGATTCCTTGACATTTGATCAGAAGCCTAATTCACATAGTTCCGAAACCAGTTTGAGGGAAGATGGGGACTCTACGTTGGGTACTTGGAGAGACCTTCTTGAAAATCCAAAACAATGGATGGACTACCGTGACCAAAAACGTAATAAATTGGTAAAGCGAAATCACCCTGATTTCAAGCGTAAGGATGGTGGTCATGCACTCTGGCTTAACAAGGTACCGCAGTGGGTTTTGTCAGAGCTTAAAGGCATGGAGTTTGATGTTCCAATTCGGAAGCCCAAACAAGCAAATGAGGGTAGAGGTGATAAATCCTGGAAGGACTTGGTGGAAAACCCAGATAAATGGTGGGATAACAGATTGCAGAAGCGGAACGCAAAAGCTCCAGACTTTAAGCACAAAGAAATTGGTGAATCGCTGTGGCTTAACAGTTCACTGTTGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0009295 GO:0009508 GO:0009532 GO:0009536 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

165

Amino Acids

19.59

Weight (kDa)

9.6

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31010 AT4G20010 AT4G20010 AT5G44785 AT5G44785
fragaria_vesca	FvH4_3g12060 FvH4_3g12060 FvH4_3g12060
malus_domestica	MD05G1254900.v1.1 MD10G1235000.v1.1
prunus_persica	Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1
pyrus_communis	pycom05g23290
rosa_chinensis	RchiOBHm_Chr2g0098041 RchiOBHm_Chr5g0019771
rosa_laevigata	RLG00000032467
rosa_multiflora	Rmu_sc0014160.1_g000001 Rmu_sc0039603.1_g000001 Rmu_ssc0000062.1_g000028
rosa_roxburghii	Rroxscaffold_1G00058360
rosa_rugosa	Rorug05G0053800 Rorug05G0053900
rosa_samantha	Rh2DG121400 Rh5AG144300 Rh5BG143000 Rh5BG296500 Rh5CG154800 Rh5DG143300 Rh5DG306000 Rh6AG080900 Rh7AG221200 Rh7DG348200
rosa_wichuraiana	Rw4G019420 Rw5G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	271
AccB1I	GGYRCC	1 cut(s)	271
AccB7I	CCANNNNNTGG	1 cut(s)	19
AciI	CCGC	2 cut(s)	275, 421
AclWI	GGATC	2 cut(s)	37, 50
AfaI	GTAC	2 cut(s)	139, 273
AfiI	CCNNNNNNNGG	2 cut(s)	19, 111
AgsI	TTSAA	2 cut(s)	158, 232
AjnI	CCWGG	2 cut(s)	18, 365
AluBI	AGCT	3 cut(s)	10, 295, 434
AluI	AGCT	3 cut(s)	10, 295, 434
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	2 cut(s)	37, 50
Asp718I	GGTACC	1 cut(s)	271
AsuHPI	GGTGA	3 cut(s)	212, 368, 473
BaeI	ACNNNNGTAYC	2 cut(s)	263, 296
BamHI	GGATCC	1 cut(s)	42
BanI	GGYRCC	1 cut(s)	271
BccI	CCATC	3 cut(s)	113, 169, 236
BciT130I	CCWGG	2 cut(s)	20, 367
BclI	TGATCA	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	141
Bme1390I	CCNGG	2 cut(s)	20, 367
BmiI	GGNNCC	2 cut(s)	44, 273
BmrFI	CCNGG	2 cut(s)	20, 367
BpmI	CTGGAG	1 cut(s)	420
BsaI	GGTCTC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 111
Bse1I	ACTGG	1 cut(s)	105
BseBI	CCWGG	2 cut(s)	20, 367
BseDI	CCNNGG	1 cut(s)	19
BseGI	GGATG	2 cut(s)	180, 247
BseLI	CCNNNNNNNGG	2 cut(s)	19, 111
BseNI	ACTGG	1 cut(s)	105
BshNI	GGYRCC	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	2 cut(s)	19, 111
BsmAI	GTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	137
Bso31I	GGTCTC	1 cut(s)	141
Bsp143I	GATC	2 cut(s)	42, 73
BspACI	CCGC	2 cut(s)	275, 421
BspLI	GGNNCC	2 cut(s)	44, 273
BspPI	GGATC	2 cut(s)	37, 50
BspT107I	GGYRCC	1 cut(s)	271
BspTNI	GGTCTC	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	2 cut(s)	42, 73
Bst2UI	CCWGG	2 cut(s)	20, 367
Bst4CI	ACNGT	3 cut(s)	185, 482, 489
BstF5I	GGATG	2 cut(s)	180, 247
BstKTI	GATC	2 cut(s)	45, 76
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	2 cut(s)	42, 73
BstNI	CCWGG	2 cut(s)	20, 367
BstSCI	CCNGG	2 cut(s)	18, 365
BstX2I	RGATCY	1 cut(s)	42
BstXI	CCANNNNNNTGG	2 cut(s)	171, 396
BstYI	RGATCY	1 cut(s)	42
BtsCI	GGATG	2 cut(s)	180, 247
BtsI	GCAGTG	1 cut(s)	284
BtsIMutI	CAGTG	3 cut(s)	26, 284, 485
Csp6I	GTAC	2 cut(s)	138, 272
CviAII	CATG	2 cut(s)	251, 304
CviJI	RGCY	7 cut(s)	10, 82, 262, 295, 331, 434, 475
CviKI_1	RGCY	7 cut(s)	10, 82, 262, 295, 331, 434, 475
CviQI	GTAC	2 cut(s)	138, 272
DpnI	GATC	2 cut(s)	44, 75
DpnII	GATC	2 cut(s)	42, 73
Eco31I	GGTCTC	1 cut(s)	141
EcoRII	CCWGG	2 cut(s)	18, 365
FaeI	CATG	2 cut(s)	254, 307
FaiI	YATR	4 cut(s)	51, 93, 252, 305
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	2 cut(s)	250, 303
FbaI	TGATCA	1 cut(s)	73
FokI	GGATG	2 cut(s)	187, 254
GsuI	CTGGAG	1 cut(s)	420
Hin1II	CATG	2 cut(s)	254, 307
HinfI	GANTC	3 cut(s)	59, 125, 464
HphI	GGTGA	3 cut(s)	212, 368, 473
Hpy166II	GTNNAC	2 cut(s)	26, 485
Hpy188I	TCNGA	4 cut(s)	78, 100, 292, 327
Hpy188III	TCNNGA	2 cut(s)	155, 437
Hpy8I	GTNNAC	2 cut(s)	26, 485
HpyAV	CCTTC	2 cut(s)	161, 364
HpyCH4III	ACNGT	3 cut(s)	185, 482, 489
HpyCH4IV	ACGT	2 cut(s)	131, 196
HpyCH4V	TGCA	2 cut(s)	254, 415
HpySE526I	ACGT	2 cut(s)	131, 196
Hsp92II	CATG	2 cut(s)	254, 307
KpnI	GGTACC	1 cut(s)	275
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	42, 73
LmnI	GCTCC	2 cut(s)	15, 439
MaeII	ACGT	2 cut(s)	131, 196
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	2 cut(s)	44, 75
MboI	GATC	2 cut(s)	42, 73
MboII	GAAGA	1 cut(s)	128
MflI	RGATCY	1 cut(s)	42
MluCI	AATT	4 cut(s)	85, 203, 321, 456
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	3 cut(s)	105, 340, 347
MseI	TTAA	4 cut(s)	264, 297, 444, 477
MspR9I	CCNGG	2 cut(s)	20, 367
MvaI	CCWGG	2 cut(s)	20, 367
NdeII	GATC	2 cut(s)	42, 73
NlaIII	CATG	2 cut(s)	254, 307
NlaIV	GGNNCC	2 cut(s)	44, 273
NmuCI	GTSAC	1 cut(s)	185
PfeI	GAWTC	2 cut(s)	59, 464
PflMI	CCANNNNNTGG	1 cut(s)	19
PfoI	TCCNGGA	1 cut(s)	365
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	18, 365
PspGI	CCWGG	2 cut(s)	18, 365
PspN4I	GGNNCC	2 cut(s)	44, 273
PsuI	RGATCY	1 cut(s)	42
RsaI	GTAC	2 cut(s)	139, 273
RsaNI	GTAC	2 cut(s)	138, 272
SaqAI	TTAA	4 cut(s)	264, 297, 444, 477
Sau3AI	GATC	2 cut(s)	42, 73
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	2 cut(s)	20, 367
SetI	ASST	8 cut(s)	12, 134, 153, 199, 273, 297, 358, 436
Sse9I	AATT	4 cut(s)	85, 203, 321, 456
SsiI	CCGC	2 cut(s)	275, 421
StyD4I	CCNGG	2 cut(s)	18, 365
TaaI	ACNGT	3 cut(s)	185, 482, 489
TaiI	ACGT	2 cut(s)	134, 199
TasI	AATT	4 cut(s)	85, 203, 321, 456
TfiI	GAWTC	2 cut(s)	59, 464
Tru1I	TTAA	4 cut(s)	264, 297, 444, 477
Tru9I	TTAA	4 cut(s)	264, 297, 444, 477
TscAI	CASTG	3 cut(s)	33, 284, 492
TseFI	GTSAC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	185
TspRI	CASTG	3 cut(s)	33, 284, 492
Van91I	CCANNNNNTGG	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.