Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003609

Physical Location & Seq

Genomic Coordinates Reverse (-)

10117888 .. 10119235

Gene Structure 1348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG121400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAATGAATCACAGAAAGATATCCTAGTGTGGAAAAATATCCTTGTGTGGAAAGATCTCCTTGCCAAGCCTCATGAGTGGTGGGACGTCAGATCGAAAGAGGGTTCCCCAAAGGCTGCAGCCTTTGAGCGTAAGAGTAATGGCGAATTACGTATGATTGATGATTCAACTCCTGAATGGATCCAACATAAGTTAGATTCCTTGACATTTGATCAGAAACCTAATTCACATAGTTCCGAAACCAGTTTGAGGGAAGATGGGGACTCTACGTTGGGTACTTGGAGAGACCTTCTTGAAAATCCAAAACAATGGATGGACTACCGTGACCAAAAACGTAATAAATTGGTAAAGCGAAATCACCCTGATTTCAAGCGTAAGGATGGTGGTCATGCACTCTGGCTTAACAAGGTACCGCAGTGGGTTTTGTCAGAGCTTAAAGGCATGGAGTTTGATGTTCCAATTCAGAAGCCCAAACAAGCAAATGAGGGTAGAGATAAATGGTGGGATAACAGATTGCAGAAGCGGAACGCAAAAGCTCCAGACTTTAAGCACAAAGAAACTGGTGAAGCGCTGTGGCTTAACAGTTCACCGGCATGGGCGATCCCCATGTTGCCACCTTTGAAAACACAGCAAACTATGACGACTGACGATAGGAATACACCTCTTTCTCGAAACATGGAAGCATCCGTTAGTGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0009295 GO:0009508 GO:0009532 GO:0009536 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

233

Amino Acids

27.25

Weight (kDa)

9.11

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31010 AT4G20010 AT4G20010 AT5G44785 AT5G44785
fragaria_vesca	FvH4_3g12060 FvH4_3g12060 FvH4_3g12060
malus_domestica	MD05G1254900.v1.1 MD10G1235000.v1.1
prunus_persica	Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1
pyrus_communis	pycom05g23290
rosa_chinensis	RchiOBHm_Chr2g0098041 RchiOBHm_Chr5g0019771
rosa_laevigata	RLG00000032467
rosa_multiflora	Rmu_sc0014160.1_g000001 Rmu_sc0039603.1_g000001 Rmu_ssc0000062.1_g000028
rosa_roxburghii	Rroxscaffold_1G00058360
rosa_rugosa	Rorug05G0053800 Rorug05G0053900
rosa_samantha	Rh2DG121400 Rh5AG144300 Rh5BG143000 Rh5BG296500 Rh5CG154800 Rh5DG143300 Rh5DG306000 Rh6AG080900 Rh7AG221200 Rh7DG348200
rosa_wichuraiana	Rw4G019420 Rw5G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	90
Acc65I	GGTACC	1 cut(s)	409
AccB1I	GGYRCC	1 cut(s)	409
AciI	CCGC	2 cut(s)	413, 523
AclWI	GGATC	3 cut(s)	175, 188, 595
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	2 cut(s)	277, 411
AfeI	AGCGCT	1 cut(s)	570
AfiI	CCNNNNNNNGG	1 cut(s)	249
AgsI	TTSAA	4 cut(s)	168, 296, 370, 622
AluBI	AGCT	2 cut(s)	433, 536
AluI	AGCT	2 cut(s)	433, 536
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	3 cut(s)	175, 188, 595
Aor51HI	AGCGCT	1 cut(s)	570
ApeKI	GCWGC	2 cut(s)	116, 119
Asp718I	GGTACC	1 cut(s)	409
AspLEI	GCGC	1 cut(s)	571
AsuHPI	GGTGA	3 cut(s)	350, 575, 579
BaeI	ACNNNNGTAYC	2 cut(s)	401, 434
BamHI	GGATCC	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	409
BbvI	GCAGC	2 cut(s)	103, 131
BccI	CCATC	3 cut(s)	251, 307, 374
BclI	TGATCA	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	279
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	117
BfoI	RGCGCY	1 cut(s)	572
BglII	AGATCT	1 cut(s)	55
BisI	GCNGC	2 cut(s)	117, 120
BlsI	GCNGC	2 cut(s)	118, 121
BmiI	GGNNCC	3 cut(s)	106, 182, 411
BmsI	GCATC	1 cut(s)	692
BpmI	CTGGAG	1 cut(s)	522
BsaAI	YACGTR	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	1 cut(s)	249
Bse118I	RCCGGY	1 cut(s)	589
Bse1I	ACTGG	2 cut(s)	243, 565
BseGI	GGATG	3 cut(s)	318, 385, 683
BseLI	CCNNNNNNNGG	1 cut(s)	249
BseNI	ACTGG	2 cut(s)	243, 565
BseXI	GCAGC	2 cut(s)	103, 131
BshNI	GGYRCC	1 cut(s)	409
BsiSI	CCGG	1 cut(s)	590
BslFI	GGGAC	2 cut(s)	98, 275
BslI	CCNNNNNNNGG	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	279
BsmFI	GGGAC	2 cut(s)	98, 275
Bso31I	GGTCTC	1 cut(s)	279
Bsp143I	GATC	5 cut(s)	55, 92, 180, 211, 600
BspACI	CCGC	2 cut(s)	413, 523
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	3 cut(s)	106, 182, 411
BspMAI	CTGCAG	1 cut(s)	121
BspPI	GGATC	3 cut(s)	175, 188, 595
BspT107I	GGYRCC	1 cut(s)	409
BspTNI	GGTCTC	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	589
BsrI	ACTGG	2 cut(s)	243, 565
BssAI	RCCGGY	1 cut(s)	589
BssMI	GATC	5 cut(s)	55, 92, 180, 211, 600
BssNI	GRCGYC	1 cut(s)	87
Bst4CI	ACNGT	2 cut(s)	323, 584
BstACI	GRCGYC	1 cut(s)	87
BstBAI	YACGTR	1 cut(s)	152
BstF5I	GGATG	3 cut(s)	318, 385, 683
BstH2I	RGCGCY	1 cut(s)	572
BstHHI	GCGC	1 cut(s)	571
BstKTI	GATC	5 cut(s)	58, 95, 183, 214, 603
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	5 cut(s)	55, 92, 180, 211, 600
BstSFI	CTRYAG	1 cut(s)	117
BstSNI	TACGTA	1 cut(s)	152
BstV1I	GCAGC	2 cut(s)	103, 131
BstX2I	RGATCY	2 cut(s)	55, 180
BstXI	CCANNNNNNTGG	1 cut(s)	309
BstYI	RGATCY	2 cut(s)	55, 180
BtsCI	GGATG	3 cut(s)	318, 385, 683
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	1 cut(s)	422
CciI	TCATGA	1 cut(s)	73
CfoI	GCGC	1 cut(s)	571
Cfr10I	RCCGGY	1 cut(s)	589
Csp6I	GTAC	2 cut(s)	276, 410
CviAII	CATG	6 cut(s)	74, 389, 442, 594, 607, 676
CviJI	RGCY	8 cut(s)	70, 116, 122, 400, 433, 469, 536, 577
CviKI_1	RGCY	8 cut(s)	70, 116, 122, 400, 433, 469, 536, 577
CviQI	GTAC	2 cut(s)	276, 410
DpnI	GATC	5 cut(s)	57, 94, 182, 213, 602
DpnII	GATC	5 cut(s)	55, 92, 180, 211, 600
Eco105I	TACGTA	1 cut(s)	152
Eco31I	GGTCTC	1 cut(s)	279
Eco32I	GATATC	1 cut(s)	22
Eco47III	AGCGCT	1 cut(s)	570
EcoRV	GATATC	1 cut(s)	22
FaeI	CATG	6 cut(s)	77, 392, 445, 597, 610, 679
FalI	AAGNNNNNCTT	2 cut(s)	45, 77
FaqI	GGGAC	2 cut(s)	98, 275
FatI	CATG	6 cut(s)	73, 388, 441, 593, 606, 675
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	117, 120
FokI	GGATG	3 cut(s)	325, 392, 670
Fsp4HI	GCNGC	2 cut(s)	117, 120
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	1 cut(s)	570
GluI	GCNGC	2 cut(s)	117, 120
GsuI	CTGGAG	1 cut(s)	522
HaeII	RGCGCY	1 cut(s)	572
HapII	CCGG	1 cut(s)	590
HhaI	GCGC	1 cut(s)	571
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	6 cut(s)	77, 392, 445, 597, 610, 679
Hin6I	GCGC	1 cut(s)	569
HinP1I	GCGC	1 cut(s)	569
HinfI	GANTC	4 cut(s)	8, 164, 197, 263
HpaII	CCGG	1 cut(s)	590
HphI	GGTGA	3 cut(s)	350, 575, 579
Hpy166II	GTNNAC	1 cut(s)	587
Hpy188I	TCNGA	5 cut(s)	92, 216, 238, 430, 465
Hpy188III	TCNNGA	5 cut(s)	74, 173, 293, 539, 669
Hpy8I	GTNNAC	1 cut(s)	587
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	2 cut(s)	323, 584
HpyCH4IV	ACGT	4 cut(s)	87, 151, 269, 334
HpyCH4V	TGCA	3 cut(s)	119, 392, 517
HpySE526I	ACGT	4 cut(s)	87, 151, 269, 334
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	6 cut(s)	77, 392, 445, 597, 610, 679
HspAI	GCGC	1 cut(s)	569
KpnI	GGTACC	1 cut(s)	413
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	5 cut(s)	55, 92, 180, 211, 600
LmnI	GCTCC	1 cut(s)	541
LpnPI	CCDG	7 cut(s)	186, 256, 375, 382, 546, 552, 603
Lsp1109I	GCAGC	2 cut(s)	103, 131
LweI	GCATC	1 cut(s)	692
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	4 cut(s)	87, 151, 269, 334
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	5 cut(s)	57, 94, 182, 213, 602
MboI	GATC	5 cut(s)	55, 92, 180, 211, 600
MboII	GAAGA	1 cut(s)	266
MflI	RGATCY	2 cut(s)	55, 180
MluCI	AATT	4 cut(s)	146, 223, 341, 459
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	5 cut(s)	81, 94, 243, 478, 672
MseI	TTAA	4 cut(s)	402, 435, 546, 579
MslI	CAYNNNNRTG	1 cut(s)	592
MspI	CCGG	1 cut(s)	590
NdeII	GATC	5 cut(s)	55, 92, 180, 211, 600
NlaIII	CATG	6 cut(s)	77, 392, 445, 597, 610, 679
NlaIV	GGNNCC	3 cut(s)	106, 182, 411
NmuCI	GTSAC	1 cut(s)	323
PagI	TCATGA	1 cut(s)	73
PfeI	GAWTC	3 cut(s)	8, 164, 197
PkrI	GCNGC	2 cut(s)	118, 121
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
Ppu21I	YACGTR	1 cut(s)	152
PspN4I	GGNNCC	3 cut(s)	106, 182, 411
PstI	CTGCAG	1 cut(s)	121
PsuI	RGATCY	2 cut(s)	55, 180
RsaI	GTAC	2 cut(s)	277, 411
RsaNI	GTAC	2 cut(s)	276, 410
RseI	CAYNNNNRTG	1 cut(s)	592
SaqAI	TTAA	4 cut(s)	402, 435, 546, 579
SatI	GCNGC	2 cut(s)	117, 120
Sau3AI	GATC	5 cut(s)	55, 92, 180, 211, 600
SchI	GAGTC	1 cut(s)	257
SfaNI	GCATC	1 cut(s)	692
SfcI	CTRYAG	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	592
SnaBI	TACGTA	1 cut(s)	152
Sse9I	AATT	4 cut(s)	146, 223, 341, 459
SsiI	CCGC	2 cut(s)	413, 523
SspMI	CTAG	1 cut(s)	26
TaaI	ACNGT	2 cut(s)	323, 584
TaiI	ACGT	4 cut(s)	90, 154, 272, 337
TaqI	TCGA	2 cut(s)	95, 670
TasI	AATT	4 cut(s)	146, 223, 341, 459
TfiI	GAWTC	3 cut(s)	8, 164, 197
Tru1I	TTAA	4 cut(s)	402, 435, 546, 579
Tru9I	TTAA	4 cut(s)	402, 435, 546, 579
TscAI	CASTG	1 cut(s)	422
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	2 cut(s)	116, 119
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	2 cut(s)	17, 21
TspGWI	ACGGA	1 cut(s)	676
TspRI	CASTG	1 cut(s)	422
XspI	CTAG	1 cut(s)	26
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.