Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003609

Physical Location & Seq

Genomic Coordinates Reverse (-)

15133034 .. 15137550

Gene Structure 4517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G012760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGAGCTCTGTTCCAGCACGGTAGCAGCAGCAACCACTGGCCACTACTTCACTCCTCTCCACTCTCAATCCCACACCCACAAATCCAAACCCCCCAACTTTGCCATGAACTCCCTCTTCCGATCAACACCCTTAACCAAACGCCTCCCATTTCGTCCCTTACAATCCCACTACTCCTCCACCTCCACCACTAAACCCAAAACCCCAAACACCTACACCATCTCCACCCCCCGTTTCACTCCAAAGTCCCCACCCCCCACCAAGCCCAACTTCCCTCGCCCCACTGAAGTCCCCTTCCAGCCCAAAGTCGCCAACTCCGTCCGCCTCATCGGCCACGTCCGTACGCCGCTTCAGGTCCAGACTACCCAAGATGGAGCTTTCTGGGCCGCCACCGTCCTCACCGCGTTTTCTTCTTCTTCTTCGTCCAAGTCGCTCCGGATTCCGATTATTTTCGAGGGGGACTTGGCTCACATTGCGAGTTTACATGTGAAAGACGGTGATTATGTGTTTGTTGCTGGGAATTTGAGGTCGGATTTGAATCATCTTAATGCTAGTGAGGGTCAGGCTCGTTTGCAGGTTAAGGTGCATACACTAAACTTTGTGGAGGAATCTTTTCCAATGAGTACAAGATCCAAAGATGGCAGTGAAGAAAGGACCATTGATCACACTGTGGCAAGTGAGAAGGATGATATGAATGAATCACAGAAAGATATCCTAGTGTGGAAAAATATCCTAGTGTGGAAAGATCTCCTTGCCAAGCCTCATGAGTGGTGGGACATCAGATCGAAAGAGGGTTCCCCAAAGGCTGCAGCCTTTGAGCGTAAGAGTAATGGTGAATTACGTATGATTGATGATTCAACTCCTGAATGGATCCAACATAAGTTAGATTCCTTGACATTTGATCAGAAACCTAATTCACATAGTTCCGAAACCAGTTTGAGGGAAGATGGGGACTCTACGTTGGGTACTTGGAGAGACCTTCTTGATAATCCAAAACAATGGATGGACTACCGTGACCAAAAACGTAATAAATTGGTAAAGCGAAATCACCCTGATTTCAAGCGTAAGGATGGTGGTCATGCACTCTGGCTTAACAAGGTACCGCAGTGGGTTTTGTCAGAGCTTAAAGGCATGGAGTTTGATGTTCCAATTCTGAAGCCCAAACAAGCAAATGAGGGTAGAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0009295 GO:0009508 GO:0009532 GO:0009536 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

395

Amino Acids

44.77

Weight (kDa)

9.39

Isoelectric Point (pI)

49.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31010 AT4G20010 AT4G20010 AT5G44785 AT5G44785
fragaria_vesca	FvH4_3g12060 FvH4_3g12060 FvH4_3g12060
malus_domestica	MD05G1254900.v1.1 MD10G1235000.v1.1
prunus_persica	Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1
pyrus_communis	pycom05g23290
rosa_chinensis	RchiOBHm_Chr2g0098041 RchiOBHm_Chr5g0019771
rosa_laevigata	RLG00000032467
rosa_multiflora	Rmu_sc0014160.1_g000001 Rmu_sc0039603.1_g000001 Rmu_ssc0000062.1_g000028
rosa_roxburghii	Rroxscaffold_1G00058360
rosa_rugosa	Rorug05G0053800 Rorug05G0053900
rosa_samantha	Rh2DG121400 Rh5AG144300 Rh5BG143000 Rh5BG296500 Rh5CG154800 Rh5DG143300 Rh5DG306000 Rh6AG080900 Rh7AG221200 Rh7DG348200
rosa_wichuraiana	Rw4G019420 Rw5G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	565
Acc65I	GGTACC	1 cut(s)	1099
AccB1I	GGYRCC	1 cut(s)	1099
AccII	CGCG	1 cut(s)	404
AccIII	TCCGGA	1 cut(s)	435
AciI	CCGC	5 cut(s)	322, 347, 387, 402, 1103
AclWI	GGATC	3 cut(s)	624, 865, 878
AcoI	YGGCCR	2 cut(s)	40, 331
AcsI	RAATTY	1 cut(s)	520
AcuI	CTGAAG	3 cut(s)	306, 335, 1175
AdeI	CACNNNGTG	1 cut(s)	670
AfaI	GTAC	4 cut(s)	343, 625, 967, 1101
AfiI	CCNNNNNNNGG	1 cut(s)	939
AflIII	ACRYGT	1 cut(s)	484
AgsI	TTSAA	3 cut(s)	538, 858, 1060
AjiI	CACGTC	1 cut(s)	337
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	3 cut(s)	7, 377, 1123
AluI	AGCT	3 cut(s)	7, 377, 1123
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	969
AlwI	GGATC	3 cut(s)	624, 865, 878
Aor13HI	TCCGGA	1 cut(s)	435
AoxI	GGCC	3 cut(s)	40, 331, 384
ApeKI	GCWGC	4 cut(s)	26, 29, 806, 809
ApoI	RAATTY	1 cut(s)	520
Asp700I	GAANNNNTTC	1 cut(s)	612
Asp718I	GGTACC	1 cut(s)	1099
AspS9I	GGNCC	3 cut(s)	355, 384, 654
AsuHPI	GGTGA	4 cut(s)	391, 509, 845, 1040
AvaII	GGWCC	2 cut(s)	355, 654
BaeI	ACNNNNGTAYC	2 cut(s)	1091, 1124
BalI	TGGCCA	1 cut(s)	42
BamHI	GGATCC	1 cut(s)	870
BanI	GGYRCC	1 cut(s)	1099
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	4 cut(s)	38, 41, 793, 821
BccI	CCATC	6 cut(s)	227, 365, 632, 941, 997, 1064
BclI	TGATCA	2 cut(s)	661, 901
BcoDI	GTCTC	1 cut(s)	969
BfaI	CTAG	3 cut(s)	552, 716, 734
BfmI	CTRYAG	1 cut(s)	807
BfuAI	ACCTGC	1 cut(s)	565
BglI	GCCNNNNNGGC	1 cut(s)	330
BglII	AGATCT	1 cut(s)	745
BisI	GCNGC	6 cut(s)	27, 30, 347, 387, 807, 810
BlsI	GCNGC	6 cut(s)	28, 31, 348, 388, 808, 811
Bme18I	GGWCC	2 cut(s)	355, 654
BmgBI	CACGTC	1 cut(s)	337
BmgT120I	GGNCC	3 cut(s)	355, 384, 654
BmiI	GGNNCC	3 cut(s)	796, 872, 1101
BsaAI	YACGTR	1 cut(s)	842
BsaBI	GATNNNNATC	1 cut(s)	537
BsaI	GGTCTC	1 cut(s)	969
BsaWI	WCCGGW	1 cut(s)	435
BsaXI	ACNNNNNCTCC	4 cut(s)	161, 191, 206, 236
Bsc4I	CCNNNNNNNGG	1 cut(s)	939
Bse1I	ACTGG	2 cut(s)	43, 933
Bse3DI	GCAATG	1 cut(s)	471
Bse8I	GATNNNNATC	1 cut(s)	537
BseAI	TCCGGA	1 cut(s)	435
BseGI	GGATG	3 cut(s)	691, 1008, 1075
BseJI	GATNNNNATC	1 cut(s)	537
BseLI	CCNNNNNNNGG	1 cut(s)	939
BseMI	GCAATG	1 cut(s)	471
BseNI	ACTGG	2 cut(s)	43, 933
BseRI	GAGGAG	2 cut(s)	45, 166
BseXI	GCAGC	4 cut(s)	38, 41, 793, 821
BseYI	CCCAGC	1 cut(s)	515
Bsh1236I	CGCG	1 cut(s)	404
BshFI	GGCC	3 cut(s)	42, 333, 386
BshNI	GGYRCC	1 cut(s)	1099
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	436
BsiWI	CGTACG	1 cut(s)	341
BslFI	GGGAC	6 cut(s)	141, 232, 275, 473, 788, 965
BslI	CCNNNNNNNGG	1 cut(s)	939
BsmAI	GTCTC	1 cut(s)	969
BsmFI	GGGAC	6 cut(s)	141, 232, 275, 473, 788, 965
BsnI	GGCC	3 cut(s)	42, 333, 386
Bso31I	GGTCTC	1 cut(s)	969
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp13I	TCCGGA	1 cut(s)	435
Bsp143I	GATC	7 cut(s)	122, 629, 661, 745, 782, 870, 901
BspACI	CCGC	5 cut(s)	322, 347, 387, 402, 1103
BspANI	GGCC	3 cut(s)	42, 333, 386
BspEI	TCCGGA	1 cut(s)	435
BspFNI	CGCG	1 cut(s)	404
BspHI	TCATGA	1 cut(s)	763
BspLI	GGNNCC	3 cut(s)	796, 872, 1101
BspMAI	CTGCAG	1 cut(s)	811
BspMI	ACCTGC	1 cut(s)	565
BspPI	GGATC	3 cut(s)	624, 865, 878
BspT107I	GGYRCC	1 cut(s)	1099
BspTNI	GGTCTC	1 cut(s)	969
BsrDI	GCAATG	1 cut(s)	471
BsrI	ACTGG	2 cut(s)	43, 933
BssMI	GATC	7 cut(s)	122, 629, 661, 745, 782, 870, 901
Bst4CI	ACNGT	5 cut(s)	22, 394, 497, 670, 1013
Bst6I	CTCTTC	1 cut(s)	122
BstBAI	YACGTR	1 cut(s)	842
BstF5I	GGATG	3 cut(s)	691, 1008, 1075
BstFNI	CGCG	1 cut(s)	404
BstKTI	GATC	7 cut(s)	125, 632, 664, 748, 785, 873, 904
BstMAI	GTCTC	1 cut(s)	969
BstMBI	GATC	7 cut(s)	122, 629, 661, 745, 782, 870, 901
BstMWI	GCNNNNNNNGC	3 cut(s)	330, 383, 473
BstNSI	RCATGY	1 cut(s)	488
BstSFI	CTRYAG	1 cut(s)	807
BstSNI	TACGTA	1 cut(s)	842
BstUI	CGCG	1 cut(s)	404
BstV1I	GCAGC	4 cut(s)	38, 41, 793, 821
BstX2I	RGATCY	3 cut(s)	629, 745, 870
BstXI	CCANNNNNNTGG	1 cut(s)	999
BstYI	RGATCY	3 cut(s)	629, 745, 870
BsuRI	GGCC	3 cut(s)	42, 333, 386
BtrI	CACGTC	1 cut(s)	337
BtsCI	GGATG	3 cut(s)	691, 1008, 1075
BtsI	GCAGTG	2 cut(s)	649, 1112
BtsIMutI	CAGTG	5 cut(s)	36, 282, 649, 666, 1112
BveI	ACCTGC	1 cut(s)	565
CciI	TCATGA	1 cut(s)	763
Cfr13I	GGNCC	3 cut(s)	355, 384, 654
Csp6I	GTAC	4 cut(s)	342, 624, 966, 1100
CviAII	CATG	5 cut(s)	106, 485, 764, 1079, 1132
CviQI	GTAC	4 cut(s)	342, 624, 966, 1100
DpnI	GATC	7 cut(s)	124, 631, 663, 747, 784, 872, 903
DpnII	GATC	7 cut(s)	122, 629, 661, 745, 782, 870, 901
DraIII	CACNNNGTG	1 cut(s)	670
EaeI	YGGCCR	2 cut(s)	40, 331
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	1 cut(s)	311
Ecl136II	GAGCTC	1 cut(s)	7
Eco105I	TACGTA	1 cut(s)	842
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	969
Eco32I	GATATC	1 cut(s)	712
Eco47I	GGWCC	2 cut(s)	355, 654
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	3 cut(s)	306, 335, 1175
EcoICRI	GAGCTC	1 cut(s)	7
EcoRV	GATATC	1 cut(s)	712
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	5 cut(s)	109, 488, 767, 1082, 1135
FalI	AAGNNNNNCTT	4 cut(s)	254, 286, 735, 767
FaqI	GGGAC	6 cut(s)	141, 232, 275, 473, 788, 965
FatI	CATG	5 cut(s)	105, 484, 763, 1078, 1131
FbaI	TGATCA	2 cut(s)	661, 901
Fnu4HI	GCNGC	6 cut(s)	27, 30, 347, 387, 807, 810
FokI	GGATG	3 cut(s)	698, 1015, 1082
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	6 cut(s)	27, 30, 347, 387, 807, 810
FspBI	CTAG	3 cut(s)	552, 716, 734
GluI	GCNGC	6 cut(s)	27, 30, 347, 387, 807, 810
GsaI	CCCAGC	1 cut(s)	519
HaeIII	GGCC	3 cut(s)	42, 333, 386
HapII	CCGG	1 cut(s)	436
Hin1II	CATG	5 cut(s)	109, 488, 767, 1082, 1135
HinfI	GANTC	7 cut(s)	439, 538, 608, 698, 854, 887, 953
HpaII	CCGG	1 cut(s)	436
HphI	GGTGA	4 cut(s)	391, 509, 845, 1040
Hpy166II	GTNNAC	1 cut(s)	482
Hpy188I	TCNGA	8 cut(s)	122, 444, 532, 782, 906, 928, 1120, 1155
Hpy188III	TCNNGA	5 cut(s)	358, 436, 764, 863, 983
Hpy8I	GTNNAC	1 cut(s)	482
HpyAV	CCTTC	3 cut(s)	304, 676, 989
HpyCH4III	ACNGT	5 cut(s)	22, 394, 497, 670, 1013
HpyCH4IV	ACGT	4 cut(s)	336, 841, 959, 1024
HpyCH4V	TGCA	4 cut(s)	574, 586, 809, 1082
HpyF10VI	GCNNNNNNNGC	3 cut(s)	330, 383, 473
HpySE526I	ACGT	4 cut(s)	336, 841, 959, 1024
Hsp92II	CATG	5 cut(s)	109, 488, 767, 1082, 1135
Kpn2I	TCCGGA	1 cut(s)	435
KpnI	GGTACC	1 cut(s)	1103
Ksp22I	TGATCA	2 cut(s)	661, 901
Kzo9I	GATC	7 cut(s)	122, 629, 661, 745, 782, 870, 901
LmnI	GCTCC	3 cut(s)	4, 374, 438
Lsp1109I	GCAGC	4 cut(s)	38, 41, 793, 821
MaeI	CTAG	3 cut(s)	552, 716, 734
MaeII	ACGT	4 cut(s)	336, 841, 959, 1024
MaeIII	GTNAC	1 cut(s)	1013
MalI	GATC	7 cut(s)	124, 631, 663, 747, 784, 872, 903
MboI	GATC	7 cut(s)	122, 629, 661, 745, 782, 870, 901
MboII	GAAGA	7 cut(s)	109, 402, 405, 408, 411, 659, 956
MflI	RGATCY	3 cut(s)	629, 745, 870
MhlI	GDGCHC	1 cut(s)	9
MlsI	TGGCCA	1 cut(s)	42
MluCI	AATT	5 cut(s)	520, 836, 913, 1031, 1149
MluNI	TGGCCA	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	947
MmeI	TCCRAC	2 cut(s)	510, 898
Mox20I	TGGCCA	1 cut(s)	42
MroI	TCCGGA	1 cut(s)	435
MroXI	GAANNNNTTC	1 cut(s)	612
MscI	TGGCCA	1 cut(s)	42
MseI	TTAA	5 cut(s)	134, 546, 579, 1092, 1125
MslI	CAYNNNNRTG	1 cut(s)	546
Msp20I	TGGCCA	1 cut(s)	42
MspI	CCGG	1 cut(s)	436
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	3 cut(s)	330, 383, 473
NdeII	GATC	7 cut(s)	122, 629, 661, 745, 782, 870, 901
NlaIII	CATG	5 cut(s)	109, 488, 767, 1082, 1135
NlaIV	GGNNCC	3 cut(s)	796, 872, 1101
NmuCI	GTSAC	1 cut(s)	1013
NspI	RCATGY	1 cut(s)	488
PagI	TCATGA	1 cut(s)	763
PciI	ACATGT	1 cut(s)	484
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PdmI	GAANNNNTTC	1 cut(s)	612
PfeI	GAWTC	6 cut(s)	439, 538, 608, 698, 854, 887
Pfl23II	CGTACG	1 cut(s)	341
PkrI	GCNGC	6 cut(s)	28, 31, 348, 388, 808, 811
PleI	GAGTC	1 cut(s)	947
PpsI	GAGTC	1 cut(s)	947
Ppu21I	YACGTR	1 cut(s)	842
PscI	ACATGT	1 cut(s)	484
Psp124BI	GAGCTC	1 cut(s)	9
PspFI	CCCAGC	1 cut(s)	515
PspLI	CGTACG	1 cut(s)	341
PspN4I	GGNNCC	3 cut(s)	796, 872, 1101
PspPI	GGNCC	3 cut(s)	355, 384, 654
PstI	CTGCAG	1 cut(s)	811
PsuI	RGATCY	3 cut(s)	629, 745, 870
RsaI	GTAC	4 cut(s)	343, 625, 967, 1101
RsaNI	GTAC	4 cut(s)	342, 624, 966, 1100
RseI	CAYNNNNRTG	1 cut(s)	546
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	5 cut(s)	134, 546, 579, 1092, 1125
SatI	GCNGC	6 cut(s)	27, 30, 347, 387, 807, 810
Sau3AI	GATC	7 cut(s)	122, 629, 661, 745, 782, 870, 901
Sau96I	GGNCC	3 cut(s)	355, 384, 654
SchI	GAGTC	1 cut(s)	947
SduI	GDGCHC	1 cut(s)	9
SfcI	CTRYAG	1 cut(s)	807
SinI	GGWCC	2 cut(s)	355, 654
SmiMI	CAYNNNNRTG	1 cut(s)	546
SnaBI	TACGTA	1 cut(s)	842
Sse9I	AATT	5 cut(s)	520, 836, 913, 1031, 1149
SsiI	CCGC	5 cut(s)	322, 347, 387, 402, 1103
SspMI	CTAG	3 cut(s)	552, 716, 734
SstI	GAGCTC	1 cut(s)	9
TaaI	ACNGT	5 cut(s)	22, 394, 497, 670, 1013
TaiI	ACGT	4 cut(s)	339, 844, 962, 1027
TaqI	TCGA	2 cut(s)	453, 785
TasI	AATT	5 cut(s)	520, 836, 913, 1031, 1149
TatI	WGTACW	1 cut(s)	623
TauI	GCSGC	2 cut(s)	349, 389
TfiI	GAWTC	6 cut(s)	439, 538, 608, 698, 854, 887
Tru1I	TTAA	5 cut(s)	134, 546, 579, 1092, 1125
Tru9I	TTAA	5 cut(s)	134, 546, 579, 1092, 1125
TscAI	CASTG	5 cut(s)	43, 289, 649, 673, 1112
TseFI	GTSAC	1 cut(s)	1013
TseI	GCWGC	4 cut(s)	26, 29, 806, 809
Tsp45I	GTSAC	1 cut(s)	1013
TspDTI	ATGAA	3 cut(s)	122, 707, 711
TspGWI	ACGGA	2 cut(s)	307, 329
TspRI	CASTG	5 cut(s)	43, 289, 649, 673, 1112
VpaK11BI	GGWCC	2 cut(s)	355, 654
XapI	RAATTY	1 cut(s)	520
XceI	RCATGY	1 cut(s)	488
XmnI	GAANNNNTTC	1 cut(s)	612
XspI	CTAG	3 cut(s)	552, 716, 734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.