Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003609

Physical Location & Seq

Genomic Coordinates Reverse (-)

37886801 .. 37889731

Gene Structure 2931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG296500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCCTCCTCCCCCGACCACAACCACACCCTGAACGGCGATTCCAACACCCACGCCTCCAAAAAGCCCAAACTCTCCTTCATCAGCCCCTCCAAAATCGCCGCCGAATTCTCCCACCACGACCCCACCATCGCCCGAATCAACAACGGCAGCTTCGGGTCCTGCCCCGACTCCGTCCTCCAGGCCCAGCGCCGCTGGCAGCTCAAGTACCTCTCCCAGCCCGATCATTTCTACTTCAACCACCTCCAAGCCGGCATCCTCCACTCTCGCACCCTCATCAAGGACCTCATCAACGCCGACCACGTCGACGAGGTCTCCATCGTCGACAACGCCACCACCGCCGCCGCCATCGTCCTCCAGCAGGCCGCCTGGGGCTTCTCCGAGAGCAAGTTCGAGCAGGGCGACGCCGTCGTCATGCTCCACTACGCCTACGGCGCCGTCAAGAAGTCGATTGAGGCCTACGTCACTCGCGCCGGCGGGCACGTCATTGAGCTGGAAGTAGTTATGTTCCAGCTCCACTTCCTTGGTTCACTGACAGCAAAATGGATCGAACATAAGTTAGATTCCTTGACATTTGATCAGAAGCCTAATTCACATAGTTCCGAAACCAGTTTGAGGGAAGATGGGGACTCTACGTTGGGTACTTGGAGAGACCTTCTTGAAAATCCAAAACAATGGATGGACTACCGTGACCAAAAACGTAATAAATTGGTAAAGCGAAATCACCCTGATTTCAAGCATAAGGATGGTGGTCATGCACTCTGGCTTAACAAGGTACCGCAGTGGGTTTTGTCAGAGCTTAAAGGCATGGAGTTTGATGTTCCAATTCGGAAGTCCAAACAAGCAAATGAGGGTAGAGGTGATAAATCCTGGAAGGACTTGGTGGAAAACCCAGATAAATGGTGGGATAACAGATTGCAGAAGCTAAACTGTCGGAACGCAAAAGCTCCAGACTTTAAGCACAAAGAAACTGGTGAAGCACTGTGGCTTAACAGTTCACCGGCATGGGCGATCCCCATGTTGCCACCTTTGAAAACACAGCAAAATATGACGACTGATGATAGGAATACACCTCTTTCTCGAAACATGGAAGCATCCGTTAGTGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0009295 GO:0009508 GO:0009532 GO:0009536 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

370

Amino Acids

41.98

Weight (kDa)

7.84

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31010 AT4G20010 AT4G20010 AT5G44785 AT5G44785
fragaria_vesca	FvH4_3g12060 FvH4_3g12060 FvH4_3g12060
malus_domestica	MD05G1254900.v1.1 MD10G1235000.v1.1
prunus_persica	Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1
pyrus_communis	pycom05g23290
rosa_chinensis	RchiOBHm_Chr2g0098041 RchiOBHm_Chr5g0019771
rosa_laevigata	RLG00000032467
rosa_multiflora	Rmu_sc0014160.1_g000001 Rmu_sc0039603.1_g000001 Rmu_ssc0000062.1_g000028
rosa_roxburghii	Rroxscaffold_1G00058360
rosa_rugosa	Rorug05G0053800 Rorug05G0053900
rosa_samantha	Rh2DG121400 Rh5AG144300 Rh5BG143000 Rh5BG296500 Rh5CG154800 Rh5DG143300 Rh5DG306000 Rh6AG080900 Rh7AG221200 Rh7DG348200
rosa_wichuraiana	Rw4G019420 Rw5G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	410
Acc65I	GGTACC	1 cut(s)	775
AccB1I	GGYRCC	2 cut(s)	434, 775
AccI	GTMKAC	2 cut(s)	306, 324
AccII	CGCG	1 cut(s)	471
AciI	CCGC	8 cut(s)	102, 193, 339, 342, 345, 366, 477, 779
AclWI	GGATC	2 cut(s)	554, 1006
AcsI	RAATTY	1 cut(s)	107
AcyI	GRCGYC	2 cut(s)	405, 435
AfaI	GTAC	3 cut(s)	209, 643, 777
AfiI	CCNNNNNNNGG	3 cut(s)	280, 361, 615
AgsI	TTSAA	4 cut(s)	238, 662, 736, 1033
AjiI	CACGTC	2 cut(s)	304, 484
AjnI	CCWGG	3 cut(s)	180, 368, 869
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
AluBI	AGCT	7 cut(s)	153, 202, 493, 514, 799, 925, 947
AluI	AGCT	7 cut(s)	153, 202, 493, 514, 799, 925, 947
Alw26I	GTCTC	2 cut(s)	319, 645
AlwI	GGATC	2 cut(s)	554, 1006
AoxI	GGCC	4 cut(s)	3, 183, 363, 456
ApeKI	GCWGC	2 cut(s)	150, 199
ApoI	RAATTY	1 cut(s)	107
Asp718I	GGTACC	1 cut(s)	775
AspLEI	GCGC	3 cut(s)	192, 437, 473
AspS9I	GGNCC	3 cut(s)	159, 184, 283
AsuHPI	GGTGA	4 cut(s)	716, 872, 986, 990
AvaII	GGWCC	2 cut(s)	159, 283
BaeGI	GKGCMC	1 cut(s)	483
BaeI	ACNNNNGTAYC	2 cut(s)	767, 800
BanI	GGYRCC	2 cut(s)	434, 775
BbvI	GCAGC	2 cut(s)	162, 211
BccI	CCATC	6 cut(s)	137, 326, 356, 617, 673, 740
BceAI	ACGGC	5 cut(s)	52, 163, 392, 422, 448
BciT130I	CCWGG	3 cut(s)	182, 370, 871
BclI	TGATCA	1 cut(s)	577
BcoDI	GTCTC	2 cut(s)	319, 645
BfoI	RGCGCY	2 cut(s)	193, 438
BisI	GCNGC	7 cut(s)	102, 151, 193, 200, 342, 345, 366
BlsI	GCNGC	7 cut(s)	103, 152, 194, 201, 343, 346, 367
Bme1390I	CCNGG	3 cut(s)	182, 370, 871
Bme18I	GGWCC	2 cut(s)	159, 283
BmgBI	CACGTC	2 cut(s)	304, 484
BmgT120I	GGNCC	3 cut(s)	159, 184, 283
BmiI	GGNNCC	3 cut(s)	160, 436, 777
BmrFI	CCNGG	3 cut(s)	182, 370, 871
BmsI	GCATC	2 cut(s)	264, 1103
BpmI	CTGGAG	3 cut(s)	164, 341, 933
BpuEI	CTTGAG	1 cut(s)	188
BsaHI	GRCGYC	2 cut(s)	405, 435
BsaI	GGTCTC	2 cut(s)	319, 645
BsaJI	CCNNGG	2 cut(s)	369, 523
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	3 cut(s)	280, 361, 615
Bse118I	RCCGGY	3 cut(s)	251, 473, 1000
Bse1I	ACTGG	2 cut(s)	609, 976
BseBI	CCWGG	3 cut(s)	182, 370, 871
BseDI	CCNNGG	2 cut(s)	369, 523
BseGI	GGATG	4 cut(s)	255, 684, 751, 1094
BseLI	CCNNNNNNNGG	3 cut(s)	280, 361, 615
BseNI	ACTGG	2 cut(s)	609, 976
BseSI	GKGCMC	1 cut(s)	483
BseXI	GCAGC	2 cut(s)	162, 211
BseYI	CCCAGC	2 cut(s)	186, 216
Bsh1236I	CGCG	1 cut(s)	471
BshFI	GGCC	4 cut(s)	5, 185, 365, 458
BshNI	GGYRCC	2 cut(s)	434, 775
BsiSI	CCGG	3 cut(s)	252, 474, 1001
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	3 cut(s)	280, 361, 615
BsmAI	GTCTC	2 cut(s)	319, 645
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	4 cut(s)	5, 185, 365, 458
Bso31I	GGTCTC	2 cut(s)	319, 645
Bsp1286I	GDGCHC	1 cut(s)	483
Bsp143I	GATC	4 cut(s)	223, 546, 577, 1011
BspACI	CCGC	8 cut(s)	102, 193, 339, 342, 345, 366, 477, 779
BspANI	GGCC	4 cut(s)	5, 185, 365, 458
BspFNI	CGCG	1 cut(s)	471
BspLI	GGNNCC	3 cut(s)	160, 436, 777
BspPI	GGATC	2 cut(s)	554, 1006
BspT107I	GGYRCC	2 cut(s)	434, 775
BspTNI	GGTCTC	2 cut(s)	319, 645
BsrFI	RCCGGY	3 cut(s)	251, 473, 1000
BsrI	ACTGG	2 cut(s)	609, 976
BssAI	RCCGGY	3 cut(s)	251, 473, 1000
BssECI	CCNNGG	2 cut(s)	369, 523
BssMI	GATC	4 cut(s)	223, 546, 577, 1011
BssNI	GRCGYC	2 cut(s)	405, 435
BssT1I	CCWWGG	1 cut(s)	523
Bst2UI	CCWGG	3 cut(s)	182, 370, 871
Bst4CI	ACNGT	4 cut(s)	689, 932, 984, 995
BstACI	GRCGYC	2 cut(s)	405, 435
BstC8I	GCNNGC	5 cut(s)	197, 253, 363, 475, 479
BstENI	CCTNNNNNAGG	2 cut(s)	278, 359
BstF5I	GGATG	4 cut(s)	255, 684, 751, 1094
BstFNI	CGCG	1 cut(s)	471
BstH2I	RGCGCY	2 cut(s)	193, 438
BstHHI	GCGC	3 cut(s)	192, 437, 473
BstKTI	GATC	4 cut(s)	226, 549, 580, 1014
BstMAI	GTCTC	2 cut(s)	319, 645
BstMBI	GATC	4 cut(s)	223, 546, 577, 1011
BstMWI	GCNNNNNNNGC	3 cut(s)	196, 338, 434
BstNI	CCWGG	3 cut(s)	182, 370, 871
BstSCI	CCNGG	3 cut(s)	180, 368, 869
BstSLI	GKGCMC	1 cut(s)	483
BstUI	CGCG	1 cut(s)	471
BstV1I	GCAGC	2 cut(s)	162, 211
BstXI	CCANNNNNNTGG	3 cut(s)	524, 675, 900
BsuRI	GGCC	4 cut(s)	5, 185, 365, 458
BtgZI	GCGATG	1 cut(s)	115
BtrI	CACGTC	2 cut(s)	304, 484
BtsCI	GGATG	4 cut(s)	255, 684, 751, 1094
BtsI	GCAGTG	1 cut(s)	788
BtsIMutI	CAGTG	3 cut(s)	530, 788, 980
Cac8I	GCNNGC	5 cut(s)	197, 253, 363, 475, 479
CfoI	GCGC	3 cut(s)	192, 437, 473
Cfr10I	RCCGGY	3 cut(s)	251, 473, 1000
Cfr13I	GGNCC	3 cut(s)	159, 184, 283
CseI	GACGC	1 cut(s)	413
Csp6I	GTAC	3 cut(s)	208, 642, 776
CviAII	CATG	6 cut(s)	415, 755, 808, 1005, 1018, 1087
CviQI	GTAC	3 cut(s)	208, 642, 776
DinI	GGCGCC	1 cut(s)	436
DpnI	GATC	4 cut(s)	225, 548, 579, 1013
DpnII	GATC	4 cut(s)	223, 546, 577, 1011
DrdI	GACNNNNNNGTC	1 cut(s)	410
DseDI	GACNNNNNNGTC	1 cut(s)	410
Eco130I	CCWWGG	1 cut(s)	523
Eco147I	AGGCCT	1 cut(s)	458
Eco31I	GGTCTC	2 cut(s)	319, 645
Eco47I	GGWCC	2 cut(s)	159, 283
EcoNI	CCTNNNNNAGG	2 cut(s)	278, 359
EcoO109I	RGGNCCY	2 cut(s)	159, 283
EcoRI	GAATTC	1 cut(s)	107
EcoRII	CCWGG	3 cut(s)	180, 368, 869
EcoT14I	CCWWGG	1 cut(s)	523
EgeI	GGCGCC	1 cut(s)	436
EheI	GGCGCC	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	523
FaeI	CATG	6 cut(s)	418, 758, 811, 1008, 1021, 1090
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	6 cut(s)	414, 754, 807, 1004, 1017, 1086
FauI	CCCGC	1 cut(s)	470
FbaI	TGATCA	1 cut(s)	577
FblI	GTMKAC	2 cut(s)	306, 324
Fnu4HI	GCNGC	7 cut(s)	102, 151, 193, 200, 342, 345, 366
FokI	GGATG	4 cut(s)	242, 691, 758, 1081
Fsp4HI	GCNGC	7 cut(s)	102, 151, 193, 200, 342, 345, 366
GlaI	GCGC	3 cut(s)	191, 436, 472
GluI	GCNGC	7 cut(s)	102, 151, 193, 200, 342, 345, 366
GsaI	CCCAGC	2 cut(s)	190, 220
GsuI	CTGGAG	3 cut(s)	164, 341, 933
HaeII	RGCGCY	2 cut(s)	193, 438
HaeIII	GGCC	4 cut(s)	5, 185, 365, 458
HapII	CCGG	3 cut(s)	252, 474, 1001
HgaI	GACGC	1 cut(s)	413
HhaI	GCGC	3 cut(s)	192, 437, 473
Hin1I	GRCGYC	2 cut(s)	405, 435
Hin1II	CATG	6 cut(s)	418, 758, 811, 1008, 1021, 1090
Hin6I	GCGC	3 cut(s)	190, 435, 471
HinP1I	GCGC	3 cut(s)	190, 435, 471
HincII	GTYRAC	2 cut(s)	307, 325
HindII	GTYRAC	2 cut(s)	307, 325
HinfI	GANTC	5 cut(s)	41, 138, 170, 563, 629
HpaII	CCGG	3 cut(s)	252, 474, 1001
HphI	GGTGA	4 cut(s)	716, 872, 986, 990
Hpy166II	GTNNAC	4 cut(s)	307, 325, 530, 998
Hpy188I	TCNGA	6 cut(s)	382, 582, 604, 796, 831, 936
Hpy188III	TCNNGA	4 cut(s)	442, 659, 950, 1080
Hpy8I	GTNNAC	4 cut(s)	307, 325, 530, 998
Hpy99I	CGWCG	5 cut(s)	308, 311, 326, 407, 413
HpyAV	CCTTC	3 cut(s)	88, 665, 868
HpyCH4III	ACNGT	4 cut(s)	689, 932, 984, 995
HpyCH4IV	ACGT	5 cut(s)	303, 462, 483, 635, 700
HpyCH4V	TGCA	2 cut(s)	758, 919
HpyF10VI	GCNNNNNNNGC	3 cut(s)	196, 338, 434
HpySE526I	ACGT	5 cut(s)	303, 462, 483, 635, 700
Hsp92I	GRCGYC	2 cut(s)	405, 435
Hsp92II	CATG	6 cut(s)	418, 758, 811, 1008, 1021, 1090
HspAI	GCGC	3 cut(s)	190, 435, 471
KasI	GGCGCC	1 cut(s)	434
KpnI	GGTACC	1 cut(s)	779
KroI	GCCGGC	2 cut(s)	251, 473
KroNI	GCCGGC	2 cut(s)	253, 475
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	4 cut(s)	223, 546, 577, 1011
LmnI	GCTCC	3 cut(s)	423, 519, 952
Lsp1109I	GCAGC	2 cut(s)	162, 211
LweI	GCATC	2 cut(s)	264, 1103
MaeII	ACGT	5 cut(s)	303, 462, 483, 635, 700
MaeIII	GTNAC	2 cut(s)	463, 689
MalI	GATC	4 cut(s)	225, 548, 579, 1013
MboI	GATC	4 cut(s)	223, 546, 577, 1011
MboII	GAAGA	1 cut(s)	632
MhlI	GDGCHC	1 cut(s)	483
MluCI	AATT	4 cut(s)	107, 589, 707, 825
Mly113I	GGCGCC	1 cut(s)	435
MlyI	GAGTC	2 cut(s)	164, 623
MmeI	TCCRAC	2 cut(s)	69, 914
MreI	CGCCGGCG	1 cut(s)	473
MroNI	GCCGGC	2 cut(s)	251, 473
MseI	TTAA	4 cut(s)	768, 801, 957, 990
MslI	CAYNNNNRTG	2 cut(s)	744, 1003
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	3 cut(s)	252, 474, 1001
MspR9I	CCNGG	3 cut(s)	182, 370, 871
MvaI	CCWGG	3 cut(s)	182, 370, 871
MvnI	CGCG	1 cut(s)	471
MwoI	GCNNNNNNNGC	3 cut(s)	196, 338, 434
NaeI	GCCGGC	2 cut(s)	253, 475
NarI	GGCGCC	1 cut(s)	435
NdeII	GATC	4 cut(s)	223, 546, 577, 1011
NgoMIV	GCCGGC	2 cut(s)	251, 473
NlaIII	CATG	6 cut(s)	418, 758, 811, 1008, 1021, 1090
NlaIV	GGNNCC	3 cut(s)	160, 436, 777
NmuCI	GTSAC	2 cut(s)	463, 689
PceI	AGGCCT	1 cut(s)	458
PcsI	WCGNNNNNNNCGW	2 cut(s)	300, 399
PdiI	GCCGGC	2 cut(s)	253, 475
PfeI	GAWTC	3 cut(s)	41, 138, 563
PflFI	GACNNNGTC	4 cut(s)	173, 302, 311, 407
PfoI	TCCNGGA	1 cut(s)	869
PkrI	GCNGC	7 cut(s)	103, 152, 194, 201, 343, 346, 367
PleI	GAGTC	2 cut(s)	164, 623
PluTI	GGCGCC	1 cut(s)	438
PpsI	GAGTC	2 cut(s)	164, 623
PpuMI	RGGWCCY	2 cut(s)	159, 283
Psp5II	RGGWCCY	2 cut(s)	159, 283
Psp6I	CCWGG	3 cut(s)	180, 368, 869
PspFI	CCCAGC	2 cut(s)	186, 216
PspGI	CCWGG	3 cut(s)	180, 368, 869
PspN4I	GGNNCC	3 cut(s)	160, 436, 777
PspPI	GGNCC	3 cut(s)	159, 184, 283
PspPPI	RGGWCCY	2 cut(s)	159, 283
PsyI	GACNNNGTC	4 cut(s)	173, 302, 311, 407
RsaI	GTAC	3 cut(s)	209, 643, 777
RsaNI	GTAC	3 cut(s)	208, 642, 776
RseI	CAYNNNNRTG	2 cut(s)	744, 1003
SalI	GTCGAC	2 cut(s)	305, 323
SaqAI	TTAA	4 cut(s)	768, 801, 957, 990
SatI	GCNGC	7 cut(s)	102, 151, 193, 200, 342, 345, 366
Sau3AI	GATC	4 cut(s)	223, 546, 577, 1011
Sau96I	GGNCC	3 cut(s)	159, 184, 283
SchI	GAGTC	2 cut(s)	164, 623
ScrFI	CCNGG	3 cut(s)	182, 370, 871
SduI	GDGCHC	1 cut(s)	483
SfaNI	GCATC	2 cut(s)	264, 1103
SfoI	GGCGCC	1 cut(s)	436
SgrAI	CRCCGGYG	1 cut(s)	473
SgrDI	CGTCGACG	1 cut(s)	305
SinI	GGWCC	2 cut(s)	159, 283
SmiMI	CAYNNNNRTG	2 cut(s)	744, 1003
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	4 cut(s)	107, 589, 707, 825
SseBI	AGGCCT	1 cut(s)	458
SsiI	CCGC	8 cut(s)	102, 193, 339, 342, 345, 366, 477, 779
SspDI	GGCGCC	1 cut(s)	434
StuI	AGGCCT	1 cut(s)	458
StyD4I	CCNGG	3 cut(s)	180, 368, 869
StyI	CCWWGG	1 cut(s)	523
TaaI	ACNGT	4 cut(s)	689, 932, 984, 995
TaiI	ACGT	5 cut(s)	306, 465, 486, 638, 703
TaqI	TCGA	6 cut(s)	306, 324, 393, 449, 549, 1081
TasI	AATT	4 cut(s)	107, 589, 707, 825
TauI	GCSGC	5 cut(s)	104, 195, 344, 347, 368
TfiI	GAWTC	3 cut(s)	41, 138, 563
Tru1I	TTAA	4 cut(s)	768, 801, 957, 990
Tru9I	TTAA	4 cut(s)	768, 801, 957, 990
TscAI	CASTG	3 cut(s)	537, 788, 987
TseFI	GTSAC	2 cut(s)	463, 689
TseI	GCWGC	2 cut(s)	150, 199
Tsp45I	GTSAC	2 cut(s)	463, 689
TspDTI	ATGAA	1 cut(s)	70
TspGWI	ACGGA	2 cut(s)	163, 1087
TspRI	CASTG	3 cut(s)	537, 788, 987
Tth111I	GACNNNGTC	4 cut(s)	173, 302, 311, 407
VpaK11BI	GGWCC	2 cut(s)	159, 283
XagI	CCTNNNNNAGG	2 cut(s)	278, 359
XapI	RAATTY	1 cut(s)	107
XcmI	CCANNNNNNNNNTGG	1 cut(s)	900
XmiI	GTMKAC	2 cut(s)	306, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.