Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003609

Physical Location & Seq

Genomic Coordinates Reverse (-)

46168930 .. 46170026

Gene Structure 1097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG348200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTTCCAGCTCCACTTCCTGGGTTCACTGACAGCGAAATGGATCCAACATAAGTTAGATTCCTTGACATTTGATCAGAAGCCTAATTCACATAGTTCCGAAACCAGTTTGAGGGAAGATGGGGACTCTACGTTGGGTACTTGGAGAGACCTTCTTGAAAATCCAAAACAATGGATGGACTACCGTGACCAAAAACGTAATAAATTGGTAAAGCGAAATCACCCTGATTTCAAGCGTAAGGATGGTGGTCATGCACTCTGGCTTAACAAGGTACCGCAGTGGGTTTTGTCAGAGCTTAAAGGCATGGAGTTTGATATTCCAATTCGGAAGCCCAAACAAGCAAATGAGGGTAGAGGTGATAAATCCTGGAAGGACTTGGTGGAAAACCCAGATAAATGGTGGGATAACAGATTGCAGAAGCGGAACGCAAAAGCTCCAGACTTTAAGCACAAAGAAACTGGTGAAGCGCTGTGGCTTAACAGTTCACCTGCATGGGCGATCCCCATGTTGCCACCTTTGAAAACACAGCAAAATATGACGACTGACGATAGGAATACACCTCTTTCTCGAAACATGGAAGCATCCGTTAGTGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0009295 GO:0009508 GO:0009532 GO:0009536 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

199

Amino Acids

23.24

Weight (kDa)

9.47

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31010 AT4G20010 AT4G20010 AT5G44785 AT5G44785
fragaria_vesca	FvH4_3g12060 FvH4_3g12060 FvH4_3g12060
malus_domestica	MD05G1254900.v1.1 MD10G1235000.v1.1
prunus_persica	Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1
pyrus_communis	pycom05g23290
rosa_chinensis	RchiOBHm_Chr2g0098041 RchiOBHm_Chr5g0019771
rosa_laevigata	RLG00000032467
rosa_multiflora	Rmu_sc0014160.1_g000001 Rmu_sc0039603.1_g000001 Rmu_ssc0000062.1_g000028
rosa_roxburghii	Rroxscaffold_1G00058360
rosa_rugosa	Rorug05G0053800 Rorug05G0053900
rosa_samantha	Rh2DG121400 Rh5AG144300 Rh5BG143000 Rh5BG296500 Rh5CG154800 Rh5DG143300 Rh5DG306000 Rh6AG080900 Rh7AG221200 Rh7DG348200
rosa_wichuraiana	Rw4G019420 Rw5G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	496
Acc36I	ACCTGC	1 cut(s)	496
Acc65I	GGTACC	1 cut(s)	271
AccB1I	GGYRCC	1 cut(s)	271
AccB7I	CCANNNNNTGG	1 cut(s)	19
AciI	CCGC	2 cut(s)	275, 421
AclWI	GGATC	3 cut(s)	37, 50, 493
AfaI	GTAC	2 cut(s)	139, 273
AfeI	AGCGCT	1 cut(s)	468
AfiI	CCNNNNNNNGG	2 cut(s)	19, 111
AgsI	TTSAA	3 cut(s)	158, 232, 520
AjnI	CCWGG	2 cut(s)	18, 365
AluBI	AGCT	3 cut(s)	10, 295, 434
AluI	AGCT	3 cut(s)	10, 295, 434
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	3 cut(s)	37, 50, 493
Aor51HI	AGCGCT	1 cut(s)	468
Asp718I	GGTACC	1 cut(s)	271
AspLEI	GCGC	1 cut(s)	469
AsuHPI	GGTGA	4 cut(s)	212, 368, 473, 477
BaeI	ACNNNNGTAYC	2 cut(s)	263, 296
BamHI	GGATCC	1 cut(s)	42
BanI	GGYRCC	1 cut(s)	271
BccI	CCATC	3 cut(s)	113, 169, 236
BciT130I	CCWGG	2 cut(s)	20, 367
BclI	TGATCA	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	141
BfoI	RGCGCY	1 cut(s)	470
BfuAI	ACCTGC	1 cut(s)	496
Bme1390I	CCNGG	2 cut(s)	20, 367
BmiI	GGNNCC	2 cut(s)	44, 273
BmrFI	CCNGG	2 cut(s)	20, 367
BmsI	GCATC	1 cut(s)	590
BpmI	CTGGAG	1 cut(s)	420
BsaI	GGTCTC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 111
Bse1I	ACTGG	2 cut(s)	105, 463
BseBI	CCWGG	2 cut(s)	20, 367
BseDI	CCNNGG	1 cut(s)	19
BseGI	GGATG	3 cut(s)	180, 247, 581
BseLI	CCNNNNNNNGG	2 cut(s)	19, 111
BseNI	ACTGG	2 cut(s)	105, 463
BshNI	GGYRCC	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	2 cut(s)	19, 111
BsmAI	GTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	137
Bso31I	GGTCTC	1 cut(s)	141
Bsp143I	GATC	3 cut(s)	42, 73, 498
BspACI	CCGC	2 cut(s)	275, 421
BspLI	GGNNCC	2 cut(s)	44, 273
BspMI	ACCTGC	1 cut(s)	496
BspPI	GGATC	3 cut(s)	37, 50, 493
BspT107I	GGYRCC	1 cut(s)	271
BspTNI	GGTCTC	1 cut(s)	141
BsrI	ACTGG	2 cut(s)	105, 463
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	3 cut(s)	42, 73, 498
Bst2UI	CCWGG	2 cut(s)	20, 367
Bst4CI	ACNGT	2 cut(s)	185, 482
BstF5I	GGATG	3 cut(s)	180, 247, 581
BstH2I	RGCGCY	1 cut(s)	470
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	3 cut(s)	45, 76, 501
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	3 cut(s)	42, 73, 498
BstNI	CCWGG	2 cut(s)	20, 367
BstSCI	CCNGG	2 cut(s)	18, 365
BstX2I	RGATCY	1 cut(s)	42
BstXI	CCANNNNNNTGG	2 cut(s)	171, 396
BstYI	RGATCY	1 cut(s)	42
BtsCI	GGATG	3 cut(s)	180, 247, 581
BtsI	GCAGTG	1 cut(s)	284
BtsIMutI	CAGTG	2 cut(s)	26, 284
BveI	ACCTGC	1 cut(s)	496
CfoI	GCGC	1 cut(s)	469
Csp6I	GTAC	2 cut(s)	138, 272
CviAII	CATG	5 cut(s)	251, 304, 492, 505, 574
CviJI	RGCY	7 cut(s)	10, 82, 262, 295, 331, 434, 475
CviKI_1	RGCY	7 cut(s)	10, 82, 262, 295, 331, 434, 475
CviQI	GTAC	2 cut(s)	138, 272
DpnI	GATC	3 cut(s)	44, 75, 500
DpnII	GATC	3 cut(s)	42, 73, 498
Eco31I	GGTCTC	1 cut(s)	141
Eco47III	AGCGCT	1 cut(s)	468
EcoRII	CCWGG	2 cut(s)	18, 365
FaeI	CATG	5 cut(s)	254, 307, 495, 508, 577
FaiI	YATR	8 cut(s)	51, 93, 252, 305, 493, 506, 536, 575
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	5 cut(s)	250, 303, 491, 504, 573
FbaI	TGATCA	1 cut(s)	73
FokI	GGATG	3 cut(s)	187, 254, 568
GlaI	GCGC	1 cut(s)	468
GsuI	CTGGAG	1 cut(s)	420
HaeII	RGCGCY	1 cut(s)	470
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	5 cut(s)	254, 307, 495, 508, 577
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HinfI	GANTC	2 cut(s)	59, 125
HphI	GGTGA	4 cut(s)	212, 368, 473, 477
Hpy166II	GTNNAC	2 cut(s)	26, 485
Hpy188I	TCNGA	4 cut(s)	78, 100, 292, 327
Hpy188III	TCNNGA	3 cut(s)	155, 437, 567
Hpy8I	GTNNAC	2 cut(s)	26, 485
HpyAV	CCTTC	2 cut(s)	161, 364
HpyCH4III	ACNGT	2 cut(s)	185, 482
HpyCH4IV	ACGT	2 cut(s)	131, 196
HpyCH4V	TGCA	3 cut(s)	254, 415, 491
HpySE526I	ACGT	2 cut(s)	131, 196
Hsp92II	CATG	5 cut(s)	254, 307, 495, 508, 577
HspAI	GCGC	1 cut(s)	467
KpnI	GGTACC	1 cut(s)	275
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	3 cut(s)	42, 73, 498
LmnI	GCTCC	2 cut(s)	15, 439
LweI	GCATC	1 cut(s)	590
MaeII	ACGT	2 cut(s)	131, 196
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	3 cut(s)	44, 75, 500
MboI	GATC	3 cut(s)	42, 73, 498
MboII	GAAGA	1 cut(s)	128
MflI	RGATCY	1 cut(s)	42
MluCI	AATT	3 cut(s)	85, 203, 321
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	4 cut(s)	105, 340, 347, 570
MseI	TTAA	4 cut(s)	264, 297, 444, 477
MslI	CAYNNNNRTG	1 cut(s)	490
MspR9I	CCNGG	2 cut(s)	20, 367
MvaI	CCWGG	2 cut(s)	20, 367
NdeII	GATC	3 cut(s)	42, 73, 498
NlaIII	CATG	5 cut(s)	254, 307, 495, 508, 577
NlaIV	GGNNCC	2 cut(s)	44, 273
NmuCI	GTSAC	1 cut(s)	185
PaqCI	CACCTGC	1 cut(s)	496
PfeI	GAWTC	1 cut(s)	59
PflMI	CCANNNNNTGG	1 cut(s)	19
PfoI	TCCNGGA	1 cut(s)	365
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	18, 365
PspGI	CCWGG	2 cut(s)	18, 365
PspN4I	GGNNCC	2 cut(s)	44, 273
PsuI	RGATCY	1 cut(s)	42
RsaI	GTAC	2 cut(s)	139, 273
RsaNI	GTAC	2 cut(s)	138, 272
RseI	CAYNNNNRTG	1 cut(s)	490
SaqAI	TTAA	4 cut(s)	264, 297, 444, 477
Sau3AI	GATC	3 cut(s)	42, 73, 498
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	2 cut(s)	20, 367
SfaNI	GCATC	1 cut(s)	590
SmiMI	CAYNNNNRTG	1 cut(s)	490
Sse9I	AATT	3 cut(s)	85, 203, 321
SsiI	CCGC	2 cut(s)	275, 421
StyD4I	CCNGG	2 cut(s)	18, 365
TaaI	ACNGT	2 cut(s)	185, 482
TaiI	ACGT	2 cut(s)	134, 199
TaqI	TCGA	1 cut(s)	568
TasI	AATT	3 cut(s)	85, 203, 321
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	4 cut(s)	264, 297, 444, 477
Tru9I	TTAA	4 cut(s)	264, 297, 444, 477
TscAI	CASTG	2 cut(s)	33, 284
TseFI	GTSAC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	185
TspGWI	ACGGA	1 cut(s)	574
TspRI	CASTG	2 cut(s)	33, 284
Van91I	CCANNNNNTGG	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.