Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003609

Physical Location & Seq

Genomic Coordinates Forward (+)

38544503 .. 38548650

Gene Structure 4148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1254900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGAATTCAATAAGCAGAGCAATACAGACCAGAAAACGCCTTCTCTCGCGCCCCTTGCTTCTTCTCCAATCCCACTTCTCCACCACCGCCACTAAACCCAAAACCTCAACCACCTACACCGTCACTAAACCCCGCTTCAAGTCCAAACCACCGCAGCCGCCGCCAAACCCCGATTTGCCGGCCCCGACCCAAGTCCCCTTCCAGCCAAAGGTCGCCAATTCGGTGCGCCTCATTGGTCACGTGCGTACCCCTCTTCAAGTCGTGCGTACTCCTGATGGCAAAGTCTTGGCCGCCACCGTTCTCACCTCCTCTTGTTCCTCTCCGGGTTACACCTTTCGGATTCCCATCGTCTTTGAGGGCGACTTGGCTCATACTGCTGATCTGCATTTGAAAGACAGTGACTTTGTGTTTGTTGCTGGAAGTTTGAGGTCGGATTTGGAAAATTTGAGTGCCGCTGAGGACCAGGCTCGTCTTCAGGTTTTGGTGCATACCCTCAACTTTGTTGAAGAATCTTATCAACTGAATAAAAGCTCTAAAGCTGACAGACAAGAAGAAAGGACAACTGATCACACTGTTGTATATGATGACAGGGATCAATCATGGAAGAAAGATCTTCTCGCATGGAAAGATCTCCTTGCCAAGCCTCATGAGTGGTGGGACATCAGGTTGAAAGAGGATCCAAAGGCTGCAGCTTTTGAACGGAAGAACAATGGCGAGTTACTTTGGATAAATGACAAAACTCCTGAATTGATCCTAAACAAGTTAGATTCTTTGACATTTGATAAGAAACCTATACCAGATAGTCAGAAGCCAGAGACTCAGAAACCTATATCAGATACTCGTGAAACCATCTTGAGGAATGATGGGGACTCTACGTTGGGTTCTTGGAGTGATCTTCTTAGTAATCCAAAACAATGGTGGGACTGCCGCAGTAAGAAGCTCAATGGATTGGTAAAGCCAAACTACCCTGATTTCAAGCGGAAGGAAGGTGGTCATGCTCTCTGGCTTGAGAAGGCACCAAAGTCGGTTTTGTCAGAACTTGAAGGCCTGCATTTTGATGTTCAAATTCAGAAGTCAAAACAAGTAAAAGAGAGTAAAGGGGAGGATTCCTGGAAGAACTTGGTGGAAAACCCGGATAAATGGTGGGATAATAGATTGAATAAGCGGAATCCAAAAGCTCCGGATTTTAAGCACAAAGAAACAGGTGAAGGACTTTGGCTCGACAGTTCGCCAGCATGGGCACAACCTAAGCTGCCACCTTCAAAAACACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0009295 GO:0009508 GO:0009532 GO:0009536 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

425

Amino Acids

48.33

Weight (kDa)

9.27

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31010 AT4G20010 AT4G20010 AT5G44785 AT5G44785
fragaria_vesca	FvH4_3g12060 FvH4_3g12060 FvH4_3g12060
malus_domestica	MD05G1254900.v1.1 MD10G1235000.v1.1
prunus_persica	Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1
pyrus_communis	pycom05g23290
rosa_chinensis	RchiOBHm_Chr2g0098041 RchiOBHm_Chr5g0019771
rosa_laevigata	RLG00000032467
rosa_multiflora	Rmu_sc0014160.1_g000001 Rmu_sc0039603.1_g000001 Rmu_ssc0000062.1_g000028
rosa_roxburghii	Rroxscaffold_1G00058360
rosa_rugosa	Rorug05G0053800 Rorug05G0053900
rosa_samantha	Rh2DG121400 Rh5AG144300 Rh5BG143000 Rh5BG296500 Rh5CG154800 Rh5DG143300 Rh5DG306000 Rh6AG080900 Rh7AG221200 Rh7DG348200
rosa_wichuraiana	Rw4G019420 Rw5G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1015
AccII	CGCG	1 cut(s)	49
AccIII	TCCGGA	1 cut(s)	1180
AclWI	GGATC	4 cut(s)	600, 671, 684, 745
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	3 cut(s)	4, 442, 1065
AcuI	CTGAAG	1 cut(s)	458
AcvI	CACGTG	1 cut(s)	241
AfaI	GTAC	2 cut(s)	247, 268
AfiI	CCNNNNNNNGG	2 cut(s)	208, 855
AjnI	CCWGG	2 cut(s)	462, 1109
AluBI	AGCT	6 cut(s)	531, 539, 692, 940, 1178, 1252
AluI	AGCT	6 cut(s)	531, 539, 692, 940, 1178, 1252
Alw26I	GTCTC	1 cut(s)	809
AlwI	GGATC	4 cut(s)	600, 671, 684, 745
Aor13HI	TCCGGA	1 cut(s)	1180
AoxI	GGCC	3 cut(s)	180, 288, 1045
ApeKI	GCWGC	4 cut(s)	154, 686, 689, 1252
ApoI	RAATTY	3 cut(s)	4, 442, 1065
ArsI	GACNNNNNNTTYG	4 cut(s)	386, 392, 418, 424
AspLEI	GCGC	2 cut(s)	51, 228
AspS9I	GGNCC	2 cut(s)	181, 460
AsuC2I	CCSGG	2 cut(s)	324, 1133
AsuHPI	GGTGA	2 cut(s)	295, 1217
AvaII	GGWCC	1 cut(s)	460
BaeGI	GKGCMC	1 cut(s)	1243
BaeI	ACNNNNGTAYC	2 cut(s)	229, 262
BamHI	GGATCC	1 cut(s)	676
BanI	GGYRCC	1 cut(s)	1015
BauI	CACGAG	1 cut(s)	840
BbrPI	CACGTG	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	464
BbvCI	CCTCAGC	1 cut(s)	456
BbvI	GCAGC	4 cut(s)	166, 673, 701, 1239
BccI	CCATC	4 cut(s)	269, 353, 857, 857
BcgI	CGANNNNNNTGC	2 cut(s)	1005, 1039
BciT130I	CCWGG	2 cut(s)	464, 1111
BclI	TGATCA	1 cut(s)	565
BcnI	CCSGG	2 cut(s)	324, 1133
BcoDI	GTCTC	1 cut(s)	809
BfmI	CTRYAG	1 cut(s)	687
BglII	AGATCT	2 cut(s)	610, 628
BisI	GCNGC	9 cut(s)	155, 158, 161, 291, 453, 687, 690, 928, 1253
BlsI	GCNGC	9 cut(s)	156, 159, 162, 292, 454, 688, 691, 929, 1254
Bme1390I	CCNGG	4 cut(s)	324, 464, 1111, 1133
Bme18I	GGWCC	1 cut(s)	460
BmgT120I	GGNCC	2 cut(s)	181, 460
BmiI	GGNNCC	3 cut(s)	183, 678, 1017
BmrFI	CCNGG	4 cut(s)	324, 464, 1111, 1133
BoxI	GACNNNNGTC	1 cut(s)	191
BpiI	GAAGAC	1 cut(s)	464
Bpu10I	CCTNAGC	2 cut(s)	456, 1248
BpuEI	CTTGAG	2 cut(s)	874, 1028
BpuMI	CCSGG	2 cut(s)	324, 1133
BsaAI	YACGTR	1 cut(s)	241
BsaBI	GATNNNNATC	1 cut(s)	344
BsaWI	WCCGGW	1 cut(s)	1180
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 855
Bse118I	RCCGGY	1 cut(s)	178
Bse8I	GATNNNNATC	1 cut(s)	344
BseAI	TCCGGA	1 cut(s)	1180
BseBI	CCWGG	2 cut(s)	464, 1111
BseJI	GATNNNNATC	1 cut(s)	344
BseLI	CCNNNNNNNGG	2 cut(s)	208, 855
BseMII	CTCAG	2 cut(s)	447, 833
BseRI	GAGGAG	1 cut(s)	298
BseSI	GKGCMC	1 cut(s)	1243
BseXI	GCAGC	4 cut(s)	166, 673, 701, 1239
Bsh1236I	CGCG	1 cut(s)	49
BshFI	GGCC	3 cut(s)	182, 290, 1047
BshNI	GGYRCC	1 cut(s)	1015
BsiSI	CCGG	4 cut(s)	179, 323, 1133, 1181
BslFI	GGGAC	4 cut(s)	179, 671, 881, 935
BslI	CCNNNNNNNGG	2 cut(s)	208, 855
BsmAI	GTCTC	1 cut(s)	809
BsmFI	GGGAC	4 cut(s)	179, 671, 881, 935
BsnI	GGCC	3 cut(s)	182, 290, 1047
Bsp1286I	GDGCHC	1 cut(s)	1243
Bsp13I	TCCGGA	1 cut(s)	1180
Bsp143I	GATC	8 cut(s)	379, 565, 592, 610, 628, 676, 750, 892
BspANI	GGCC	3 cut(s)	182, 290, 1047
BspCNI	CTCAG	2 cut(s)	448, 832
BspEI	TCCGGA	1 cut(s)	1180
BspFNI	CGCG	1 cut(s)	49
BspHI	TCATGA	1 cut(s)	646
BspLI	GGNNCC	3 cut(s)	183, 678, 1017
BspMAI	CTGCAG	1 cut(s)	691
BspPI	GGATC	4 cut(s)	600, 671, 684, 745
BspT107I	GGYRCC	1 cut(s)	1015
BsrFI	RCCGGY	1 cut(s)	178
BssAI	RCCGGY	1 cut(s)	178
BssMI	GATC	8 cut(s)	379, 565, 592, 610, 628, 676, 750, 892
BssSI	CACGAG	1 cut(s)	840
Bst2BI	CACGAG	1 cut(s)	840
Bst2UI	CCWGG	2 cut(s)	464, 1111
Bst4CI	ACNGT	6 cut(s)	121, 298, 398, 574, 1226, 1272
Bst6I	CTCTTC	1 cut(s)	258
BstBAI	YACGTR	1 cut(s)	241
BstC8I	GCNNGC	3 cut(s)	180, 1049, 1233
BstDEI	CTNAG	4 cut(s)	456, 819, 899, 1248
BstFNI	CGCG	1 cut(s)	49
BstHHI	GCGC	2 cut(s)	51, 228
BstKTI	GATC	8 cut(s)	382, 568, 595, 613, 631, 679, 753, 895
BstMAI	GTCTC	1 cut(s)	809
BstMBI	GATC	8 cut(s)	379, 565, 592, 610, 628, 676, 750, 892
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 160, 374
BstNI	CCWGG	2 cut(s)	464, 1111
BstPAI	GACNNNNGTC	1 cut(s)	191
BstSCI	CCNGG	4 cut(s)	322, 462, 1109, 1131
BstSFI	CTRYAG	1 cut(s)	687
BstSLI	GKGCMC	1 cut(s)	1243
BstUI	CGCG	1 cut(s)	49
BstV1I	GCAGC	4 cut(s)	166, 673, 701, 1239
BstV2I	GAAGAC	1 cut(s)	464
BstX2I	RGATCY	3 cut(s)	610, 628, 676
BstXI	CCANNNNNNTGG	1 cut(s)	915
BstYI	RGATCY	3 cut(s)	610, 628, 676
BsuRI	GGCC	3 cut(s)	182, 290, 1047
BtsIMutI	CAGTG	2 cut(s)	403, 570
Cac8I	GCNNGC	3 cut(s)	180, 1049, 1233
CciI	TCATGA	1 cut(s)	646
CfoI	GCGC	2 cut(s)	51, 228
Cfr10I	RCCGGY	1 cut(s)	178
Cfr13I	GGNCC	2 cut(s)	181, 460
Csp6I	GTAC	2 cut(s)	246, 267
CviAII	CATG	5 cut(s)	600, 621, 647, 995, 1236
CviQI	GTAC	2 cut(s)	246, 267
DdeI	CTNAG	4 cut(s)	456, 819, 899, 1248
DpnI	GATC	8 cut(s)	381, 567, 594, 612, 630, 678, 752, 894
DpnII	GATC	8 cut(s)	379, 565, 592, 610, 628, 676, 750, 892
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco147I	AGGCCT	1 cut(s)	1047
Eco47I	GGWCC	1 cut(s)	460
Eco57I	CTGAAG	1 cut(s)	458
Eco72I	CACGTG	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	2 cut(s)	462, 1109
FaeI	CATG	5 cut(s)	603, 624, 650, 998, 1239
FalI	AAGNNNNNCTT	2 cut(s)	618, 650
FaqI	GGGAC	4 cut(s)	179, 671, 881, 935
FatI	CATG	5 cut(s)	599, 620, 646, 994, 1235
FauI	CCCGC	1 cut(s)	140
FbaI	TGATCA	1 cut(s)	565
Fnu4HI	GCNGC	9 cut(s)	155, 158, 161, 291, 453, 687, 690, 928, 1253
Fsp4HI	GCNGC	9 cut(s)	155, 158, 161, 291, 453, 687, 690, 928, 1253
GlaI	GCGC	2 cut(s)	50, 227
GluI	GCNGC	9 cut(s)	155, 158, 161, 291, 453, 687, 690, 928, 1253
HaeIII	GGCC	3 cut(s)	182, 290, 1047
HapII	CCGG	4 cut(s)	179, 323, 1133, 1181
HhaI	GCGC	2 cut(s)	51, 228
Hin1II	CATG	5 cut(s)	603, 624, 650, 998, 1239
Hin6I	GCGC	2 cut(s)	49, 226
HinP1I	GCGC	2 cut(s)	49, 226
HinfI	GANTC	7 cut(s)	340, 509, 767, 817, 869, 1106, 1168
HpaII	CCGG	4 cut(s)	179, 323, 1133, 1181
HphI	GGTGA	2 cut(s)	295, 1217
Hpy188I	TCNGA	7 cut(s)	339, 433, 807, 822, 835, 1036, 1071
Hpy188III	TCNNGA	6 cut(s)	272, 647, 743, 842, 853, 1181
HpyAV	CCTTC	8 cut(s)	50, 208, 976, 980, 1006, 1037, 1202, 1269
HpyCH4III	ACNGT	6 cut(s)	121, 298, 398, 574, 1226, 1272
HpyCH4IV	ACGT	2 cut(s)	240, 875
HpyCH4V	TGCA	4 cut(s)	385, 487, 689, 1051
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 160, 374
HpyF3I	CTNAG	4 cut(s)	456, 819, 899, 1248
HpySE526I	ACGT	2 cut(s)	240, 875
Hsp92II	CATG	5 cut(s)	603, 624, 650, 998, 1239
HspAI	GCGC	2 cut(s)	49, 226
Kpn2I	TCCGGA	1 cut(s)	1180
KroI	GCCGGC	1 cut(s)	178
KroNI	GCCGGC	1 cut(s)	180
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	8 cut(s)	379, 565, 592, 610, 628, 676, 750, 892
LmnI	GCTCC	1 cut(s)	1183
Lsp1109I	GCAGC	4 cut(s)	166, 673, 701, 1239
MaeII	ACGT	2 cut(s)	240, 875
MaeIII	GTNAC	5 cut(s)	121, 236, 326, 398, 717
MalI	GATC	8 cut(s)	381, 567, 594, 612, 630, 678, 752, 894
MboI	GATC	8 cut(s)	379, 565, 592, 610, 628, 676, 750, 892
MflI	RGATCY	3 cut(s)	610, 628, 676
MhlI	GDGCHC	1 cut(s)	1243
MluCI	AATT	5 cut(s)	4, 217, 442, 746, 1065
MlyI	GAGTC	2 cut(s)	811, 863
MmeI	TCCRAC	1 cut(s)	411
MroI	TCCGGA	1 cut(s)	1180
MroNI	GCCGGC	1 cut(s)	178
MseI	TTAA	1 cut(s)	1188
MslI	CAYNNNNRTG	1 cut(s)	1056
MspA1I	CMGCKG	1 cut(s)	455
MspI	CCGG	4 cut(s)	179, 323, 1133, 1181
MspR9I	CCNGG	4 cut(s)	324, 464, 1111, 1133
MvaI	CCWGG	2 cut(s)	464, 1111
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	3 cut(s)	55, 160, 374
NaeI	GCCGGC	1 cut(s)	180
NciI	CCSGG	2 cut(s)	324, 1133
NdeII	GATC	8 cut(s)	379, 565, 592, 610, 628, 676, 750, 892
NgoMIV	GCCGGC	1 cut(s)	178
NlaIII	CATG	5 cut(s)	603, 624, 650, 998, 1239
NlaIV	GGNNCC	3 cut(s)	183, 678, 1017
NmuCI	GTSAC	3 cut(s)	121, 236, 398
PagI	TCATGA	1 cut(s)	646
PceI	AGGCCT	1 cut(s)	1047
PdiI	GCCGGC	1 cut(s)	180
PfeI	GAWTC	5 cut(s)	340, 509, 767, 1106, 1168
PfoI	TCCNGGA	1 cut(s)	1109
PkrI	GCNGC	9 cut(s)	156, 159, 162, 292, 454, 688, 691, 929, 1254
PleI	GAGTC	2 cut(s)	811, 863
PmaCI	CACGTG	1 cut(s)	241
PmlI	CACGTG	1 cut(s)	241
PpsI	GAGTC	2 cut(s)	811, 863
Ppu21I	YACGTR	1 cut(s)	241
PshAI	GACNNNNGTC	1 cut(s)	191
Psp6I	CCWGG	2 cut(s)	462, 1109
PspCI	CACGTG	1 cut(s)	241
PspGI	CCWGG	2 cut(s)	462, 1109
PspN4I	GGNNCC	3 cut(s)	183, 678, 1017
PspPI	GGNCC	2 cut(s)	181, 460
PstI	CTGCAG	1 cut(s)	691
PsuI	RGATCY	3 cut(s)	610, 628, 676
RsaI	GTAC	2 cut(s)	247, 268
RsaNI	GTAC	2 cut(s)	246, 267
RseI	CAYNNNNRTG	1 cut(s)	1056
SaqAI	TTAA	1 cut(s)	1188
SatI	GCNGC	9 cut(s)	155, 158, 161, 291, 453, 687, 690, 928, 1253
Sau3AI	GATC	8 cut(s)	379, 565, 592, 610, 628, 676, 750, 892
Sau96I	GGNCC	2 cut(s)	181, 460
SchI	GAGTC	2 cut(s)	811, 863
ScrFI	CCNGG	4 cut(s)	324, 464, 1111, 1133
SduI	GDGCHC	1 cut(s)	1243
SfcI	CTRYAG	1 cut(s)	687
SinI	GGWCC	1 cut(s)	460
SmiMI	CAYNNNNRTG	1 cut(s)	1056
SmlI	CTYRAG	2 cut(s)	853, 1007
SmoI	CTYRAG	2 cut(s)	853, 1007
Sse9I	AATT	5 cut(s)	4, 217, 442, 746, 1065
SseBI	AGGCCT	1 cut(s)	1047
StuI	AGGCCT	1 cut(s)	1047
StyD4I	CCNGG	4 cut(s)	322, 462, 1109, 1131
TaaI	ACNGT	6 cut(s)	121, 298, 398, 574, 1226, 1272
TaiI	ACGT	2 cut(s)	243, 878
TaqI	TCGA	1 cut(s)	1221
TasI	AATT	5 cut(s)	4, 217, 442, 746, 1065
TauI	GCSGC	5 cut(s)	160, 163, 293, 455, 930
TfiI	GAWTC	5 cut(s)	340, 509, 767, 1106, 1168
Tru1I	TTAA	1 cut(s)	1188
Tru9I	TTAA	1 cut(s)	1188
TscAI	CASTG	2 cut(s)	403, 577
TseFI	GTSAC	3 cut(s)	121, 236, 398
TseI	GCWGC	4 cut(s)	154, 686, 689, 1252
Tsp45I	GTSAC	3 cut(s)	121, 236, 398
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	715
TspRI	CASTG	2 cut(s)	403, 577
VpaK11BI	GGWCC	1 cut(s)	460
XapI	RAATTY	3 cut(s)	4, 442, 1065
XcmI	CCANNNNNNNNNTGG	1 cut(s)	915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.