Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003609

Physical Location & Seq

Genomic Coordinates Forward (+)

25208273 .. 25211776

Gene Structure 3504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g23290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGAATTCAATAAGCAGAGCAATACAGACCAGAAAACGCCTTCTCTCGCGCCCCTTACTTCTTCTCCAATCCCACTTCTCCACCACCGCCACTAAACCCAAAACCTCAACCACTTACACCGTCACTAAACCCCGCTTCAACTCCAAACCACCGCAGCCGCCGCCAAACCCCGATTTGCCGGCCCCGACCCAAGTCCCCTTCCAGCCAAAGGTCGCCAATTCGGTGCGCCTCATTGGTCACGTGCGTACCCCTCTTCAAGTCGTGCGTACTCCTGATGGCAAAGTTTTGGCCGCCACCGTTCTCACCTCCTCTTGTTCCTCTCCGGGTTACACCTTTCGGATTCCCATCGTCTTTGAGGGCGACTTGGCTCAAACTGCTGATCTGCATTTGAAAGACAGTGACTTTGTGTTTGTTGCTGGAAGTTTGAGGTCGGATTTGGACAATTTGAGTGCCGGTGAGGACAAGGCTCGTCTTCAGGTTTTGGTGCATACCCTCAACTTTGTTGAAGAATCTAATCAACTGAATAAAAGCTCTAAAGCTGACAGACAAGAAGAAAGGACAACTGATCGCAATCTTGTATATGATGACAAGGATCAATCATGGAAGAAAGATCTTCTCGCATGGAAAGATCTCCTTGCCAAGCCTCATGAGTGGTGGGACATCAGGTTGAAAGAGGATCCAAGGGCTGCAGCTTTTGAACGGAAGAACAATGGCGAGTTACTTTGGATTAATGACAAAACTCCTGAATTGATCCTAAACAAGTTAGATTCTTTGACATTTGATCAGAAACCTATACCAGATAGTCAGAAACCAGAGACTCAGAAACCTATATCAGATACTCATGAAACCATCTTGAGGAATGATGGGGACTCTACATTGGGTTCTTGGAGTGATCTTCTTAGTAATCCAAAACAATGGTGGGACTGCCGCAGTAAGAAGCTCAATGGATTGGTAAAGCCAAACTACCCTGATTTCAAGCGGAAGGAAGGTGGTCATGCTCTCTGGCTTGAGAAGTCACCAAAGTCGGTTTTGTCAGAACTTGAAGGCCTGCATTTTGATGTTCAAATTCAGAATTCAAAACAAGTAAAAGAGAGTAAAGGGGAGGATTCCTGGAAGAACTTGGTGGAAAACCCGGATAAATGGTGGGATAATAGATTGAATAAGCGGAATCCAAAAGCTCCAGATTTTAAGCACAAAGAAACTGGTGAAGGACTTTGGCTTGACAGTTCACCAGCATGGGCGCAACCTAAGCTGCCACCTTCAAAAACACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0009295 GO:0009508 GO:0009532 GO:0009536 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

425

Amino Acids

48.26

Weight (kDa)

9.16

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31010 AT4G20010 AT4G20010 AT5G44785 AT5G44785
fragaria_vesca	FvH4_3g12060 FvH4_3g12060 FvH4_3g12060
malus_domestica	MD05G1254900.v1.1 MD10G1235000.v1.1
prunus_persica	Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1
pyrus_communis	pycom05g23290
rosa_chinensis	RchiOBHm_Chr2g0098041 RchiOBHm_Chr5g0019771
rosa_laevigata	RLG00000032467
rosa_multiflora	Rmu_sc0014160.1_g000001 Rmu_sc0039603.1_g000001 Rmu_ssc0000062.1_g000028
rosa_roxburghii	Rroxscaffold_1G00058360
rosa_rugosa	Rorug05G0053800 Rorug05G0053900
rosa_samantha	Rh2DG121400 Rh5AG144300 Rh5BG143000 Rh5BG296500 Rh5CG154800 Rh5DG143300 Rh5DG306000 Rh6AG080900 Rh7AG221200 Rh7DG348200
rosa_wichuraiana	Rw4G019420 Rw5G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	49
AciI	CCGC	9 cut(s)	87, 133, 152, 158, 161, 291, 928, 979, 1165
AclWI	GGATC	4 cut(s)	600, 671, 684, 745
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	3 cut(s)	4, 1065, 1072
AcuI	CTGAAG	1 cut(s)	458
AcvI	CACGTG	1 cut(s)	241
AfaI	GTAC	2 cut(s)	247, 268
AfiI	CCNNNNNNNGG	2 cut(s)	208, 855
AjnI	CCWGG	1 cut(s)	1109
AluBI	AGCT	6 cut(s)	531, 539, 692, 940, 1178, 1252
AluI	AGCT	6 cut(s)	531, 539, 692, 940, 1178, 1252
Alw26I	GTCTC	1 cut(s)	809
AlwI	GGATC	4 cut(s)	600, 671, 684, 745
AoxI	GGCC	3 cut(s)	180, 288, 1045
ApeKI	GCWGC	4 cut(s)	154, 686, 689, 1252
ApoI	RAATTY	3 cut(s)	4, 1065, 1072
ArsI	GACNNNNNNTTYG	4 cut(s)	386, 392, 418, 424
AseI	ATTAAT	1 cut(s)	729
AspLEI	GCGC	3 cut(s)	51, 228, 1243
AspS9I	GGNCC	1 cut(s)	181
AsuC2I	CCSGG	2 cut(s)	324, 1133
AsuHPI	GGTGA	5 cut(s)	295, 467, 1008, 1217, 1221
BaeI	ACNNNNGTAYC	2 cut(s)	229, 262
BamHI	GGATCC	1 cut(s)	676
BbrPI	CACGTG	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	464
BbvI	GCAGC	4 cut(s)	166, 673, 701, 1239
BccI	CCATC	4 cut(s)	269, 353, 857, 857
BciT130I	CCWGG	1 cut(s)	1111
BclI	TGATCA	1 cut(s)	781
BcnI	CCSGG	2 cut(s)	324, 1133
BcoDI	GTCTC	1 cut(s)	809
BfmI	CTRYAG	1 cut(s)	687
BglII	AGATCT	2 cut(s)	610, 628
BisI	GCNGC	8 cut(s)	155, 158, 161, 291, 687, 690, 928, 1253
BlsI	GCNGC	8 cut(s)	156, 159, 162, 292, 688, 691, 929, 1254
Bme1390I	CCNGG	3 cut(s)	324, 1111, 1133
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	2 cut(s)	183, 678
BmrFI	CCNGG	3 cut(s)	324, 1111, 1133
BoxI	GACNNNNGTC	1 cut(s)	191
BpiI	GAAGAC	1 cut(s)	464
BpmI	CTGGAG	1 cut(s)	1164
Bpu10I	CCTNAGC	1 cut(s)	1248
BpuEI	CTTGAG	2 cut(s)	874, 1028
BpuMI	CCSGG	2 cut(s)	324, 1133
BsaAI	YACGTR	1 cut(s)	241
BsaBI	GATNNNNATC	2 cut(s)	344, 570
BsaJI	CCNNGG	1 cut(s)	680
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 855
Bse118I	RCCGGY	2 cut(s)	178, 452
Bse1I	ACTGG	1 cut(s)	1207
Bse8I	GATNNNNATC	2 cut(s)	344, 570
BseBI	CCWGG	1 cut(s)	1111
BseDI	CCNNGG	1 cut(s)	680
BseJI	GATNNNNATC	2 cut(s)	344, 570
BseLI	CCNNNNNNNGG	2 cut(s)	208, 855
BseMII	CTCAG	1 cut(s)	833
BseNI	ACTGG	1 cut(s)	1207
BseRI	GAGGAG	1 cut(s)	298
BseXI	GCAGC	4 cut(s)	166, 673, 701, 1239
Bsh1236I	CGCG	1 cut(s)	49
BshFI	GGCC	3 cut(s)	182, 290, 1047
BsiSI	CCGG	4 cut(s)	179, 323, 453, 1133
BslFI	GGGAC	4 cut(s)	179, 671, 881, 935
BslI	CCNNNNNNNGG	2 cut(s)	208, 855
BsmAI	GTCTC	1 cut(s)	809
BsmFI	GGGAC	4 cut(s)	179, 671, 881, 935
BsnI	GGCC	3 cut(s)	182, 290, 1047
Bsp143I	GATC	9 cut(s)	379, 565, 592, 610, 628, 676, 750, 781, 892
BspACI	CCGC	9 cut(s)	87, 133, 152, 158, 161, 291, 928, 979, 1165
BspANI	GGCC	3 cut(s)	182, 290, 1047
BspCNI	CTCAG	1 cut(s)	832
BspFNI	CGCG	1 cut(s)	49
BspHI	TCATGA	2 cut(s)	646, 841
BspLI	GGNNCC	2 cut(s)	183, 678
BspMAI	CTGCAG	1 cut(s)	691
BspPI	GGATC	4 cut(s)	600, 671, 684, 745
BsrFI	RCCGGY	2 cut(s)	178, 452
BsrI	ACTGG	1 cut(s)	1207
BssAI	RCCGGY	2 cut(s)	178, 452
BssECI	CCNNGG	1 cut(s)	680
BssMI	GATC	9 cut(s)	379, 565, 592, 610, 628, 676, 750, 781, 892
BssT1I	CCWWGG	1 cut(s)	680
Bst2UI	CCWGG	1 cut(s)	1111
Bst4CI	ACNGT	5 cut(s)	121, 298, 398, 1226, 1272
Bst6I	CTCTTC	1 cut(s)	258
BstBAI	YACGTR	1 cut(s)	241
BstC8I	GCNNGC	2 cut(s)	180, 1049
BstDEI	CTNAG	3 cut(s)	819, 899, 1248
BstFNI	CGCG	1 cut(s)	49
BstHHI	GCGC	3 cut(s)	51, 228, 1243
BstKTI	GATC	9 cut(s)	382, 568, 595, 613, 631, 679, 753, 784, 895
BstMAI	GTCTC	1 cut(s)	809
BstMBI	GATC	9 cut(s)	379, 565, 592, 610, 628, 676, 750, 781, 892
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 374, 1249
BstNI	CCWGG	1 cut(s)	1111
BstPAI	GACNNNNGTC	1 cut(s)	191
BstSCI	CCNGG	3 cut(s)	322, 1109, 1131
BstSFI	CTRYAG	1 cut(s)	687
BstUI	CGCG	1 cut(s)	49
BstV1I	GCAGC	4 cut(s)	166, 673, 701, 1239
BstV2I	GAAGAC	1 cut(s)	464
BstX2I	RGATCY	3 cut(s)	610, 628, 676
BstXI	CCANNNNNNTGG	1 cut(s)	915
BstYI	RGATCY	3 cut(s)	610, 628, 676
BsuRI	GGCC	3 cut(s)	182, 290, 1047
BtsIMutI	CAGTG	1 cut(s)	403
Cac8I	GCNNGC	2 cut(s)	180, 1049
CciI	TCATGA	2 cut(s)	646, 841
CfoI	GCGC	3 cut(s)	51, 228, 1243
Cfr10I	RCCGGY	2 cut(s)	178, 452
Cfr13I	GGNCC	1 cut(s)	181
Csp6I	GTAC	2 cut(s)	246, 267
CviAII	CATG	6 cut(s)	600, 621, 647, 842, 995, 1236
CviQI	GTAC	2 cut(s)	246, 267
DdeI	CTNAG	3 cut(s)	819, 899, 1248
DpnI	GATC	9 cut(s)	381, 567, 594, 612, 630, 678, 752, 783, 894
DpnII	GATC	9 cut(s)	379, 565, 592, 610, 628, 676, 750, 781, 892
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	680
Eco147I	AGGCCT	1 cut(s)	1047
Eco57I	CTGAAG	1 cut(s)	458
Eco72I	CACGTG	1 cut(s)	241
EcoRI	GAATTC	2 cut(s)	4, 1072
EcoRII	CCWGG	1 cut(s)	1109
EcoT14I	CCWWGG	1 cut(s)	680
ErhI	CCWWGG	1 cut(s)	680
FaeI	CATG	6 cut(s)	603, 624, 650, 845, 998, 1239
FalI	AAGNNNNNCTT	2 cut(s)	618, 650
FaqI	GGGAC	4 cut(s)	179, 671, 881, 935
FatI	CATG	6 cut(s)	599, 620, 646, 841, 994, 1235
FauI	CCCGC	1 cut(s)	140
FbaI	TGATCA	1 cut(s)	781
Fnu4HI	GCNGC	8 cut(s)	155, 158, 161, 291, 687, 690, 928, 1253
Fsp4HI	GCNGC	8 cut(s)	155, 158, 161, 291, 687, 690, 928, 1253
GlaI	GCGC	3 cut(s)	50, 227, 1242
GluI	GCNGC	8 cut(s)	155, 158, 161, 291, 687, 690, 928, 1253
GsuI	CTGGAG	1 cut(s)	1164
HaeIII	GGCC	3 cut(s)	182, 290, 1047
HapII	CCGG	4 cut(s)	179, 323, 453, 1133
HhaI	GCGC	3 cut(s)	51, 228, 1243
Hin1II	CATG	6 cut(s)	603, 624, 650, 845, 998, 1239
Hin6I	GCGC	3 cut(s)	49, 226, 1241
HinP1I	GCGC	3 cut(s)	49, 226, 1241
HinfI	GANTC	7 cut(s)	340, 509, 767, 817, 869, 1106, 1168
HpaII	CCGG	4 cut(s)	179, 323, 453, 1133
HphI	GGTGA	5 cut(s)	295, 467, 1008, 1217, 1221
Hpy166II	GTNNAC	1 cut(s)	1229
Hpy188I	TCNGA	8 cut(s)	339, 433, 786, 807, 822, 835, 1036, 1071
Hpy188III	TCNNGA	6 cut(s)	272, 647, 743, 842, 853, 1181
Hpy8I	GTNNAC	1 cut(s)	1229
HpyAV	CCTTC	7 cut(s)	50, 208, 976, 980, 1037, 1202, 1269
HpyCH4III	ACNGT	5 cut(s)	121, 298, 398, 1226, 1272
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	4 cut(s)	385, 487, 689, 1051
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 374, 1249
HpyF3I	CTNAG	3 cut(s)	819, 899, 1248
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	6 cut(s)	603, 624, 650, 845, 998, 1239
HspAI	GCGC	3 cut(s)	49, 226, 1241
KroI	GCCGGC	1 cut(s)	178
KroNI	GCCGGC	1 cut(s)	180
Ksp22I	TGATCA	1 cut(s)	781
Kzo9I	GATC	9 cut(s)	379, 565, 592, 610, 628, 676, 750, 781, 892
LmnI	GCTCC	1 cut(s)	1183
Lsp1109I	GCAGC	4 cut(s)	166, 673, 701, 1239
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	6 cut(s)	121, 236, 326, 398, 717, 1014
MalI	GATC	9 cut(s)	381, 567, 594, 612, 630, 678, 752, 783, 894
MboI	GATC	9 cut(s)	379, 565, 592, 610, 628, 676, 750, 781, 892
MflI	RGATCY	3 cut(s)	610, 628, 676
MluCI	AATT	6 cut(s)	4, 217, 442, 746, 1065, 1072
MlyI	GAGTC	2 cut(s)	811, 863
MmeI	TCCRAC	1 cut(s)	411
MroNI	GCCGGC	1 cut(s)	178
MseI	TTAA	2 cut(s)	729, 1188
MslI	CAYNNNNRTG	2 cut(s)	1056, 1234
MspI	CCGG	4 cut(s)	179, 323, 453, 1133
MspR9I	CCNGG	3 cut(s)	324, 1111, 1133
MvaI	CCWGG	1 cut(s)	1111
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	3 cut(s)	160, 374, 1249
NaeI	GCCGGC	1 cut(s)	180
NciI	CCSGG	2 cut(s)	324, 1133
NdeII	GATC	9 cut(s)	379, 565, 592, 610, 628, 676, 750, 781, 892
NgoMIV	GCCGGC	1 cut(s)	178
NlaIII	CATG	6 cut(s)	603, 624, 650, 845, 998, 1239
NlaIV	GGNNCC	2 cut(s)	183, 678
NmuCI	GTSAC	4 cut(s)	121, 236, 398, 1014
PagI	TCATGA	2 cut(s)	646, 841
PceI	AGGCCT	1 cut(s)	1047
PdiI	GCCGGC	1 cut(s)	180
PfeI	GAWTC	5 cut(s)	340, 509, 767, 1106, 1168
PfoI	TCCNGGA	1 cut(s)	1109
PkrI	GCNGC	8 cut(s)	156, 159, 162, 292, 688, 691, 929, 1254
PleI	GAGTC	2 cut(s)	811, 863
PmaCI	CACGTG	1 cut(s)	241
PmlI	CACGTG	1 cut(s)	241
PpsI	GAGTC	2 cut(s)	811, 863
Ppu21I	YACGTR	1 cut(s)	241
PshAI	GACNNNNGTC	1 cut(s)	191
PshBI	ATTAAT	1 cut(s)	729
Psp6I	CCWGG	1 cut(s)	1109
PspCI	CACGTG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	1109
PspN4I	GGNNCC	2 cut(s)	183, 678
PspPI	GGNCC	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	691
PsuI	RGATCY	3 cut(s)	610, 628, 676
RsaI	GTAC	2 cut(s)	247, 268
RsaNI	GTAC	2 cut(s)	246, 267
RseI	CAYNNNNRTG	2 cut(s)	1056, 1234
SaqAI	TTAA	2 cut(s)	729, 1188
SatI	GCNGC	8 cut(s)	155, 158, 161, 291, 687, 690, 928, 1253
Sau3AI	GATC	9 cut(s)	379, 565, 592, 610, 628, 676, 750, 781, 892
Sau96I	GGNCC	1 cut(s)	181
SchI	GAGTC	2 cut(s)	811, 863
ScrFI	CCNGG	3 cut(s)	324, 1111, 1133
SfcI	CTRYAG	1 cut(s)	687
SmiMI	CAYNNNNRTG	2 cut(s)	1056, 1234
SmlI	CTYRAG	2 cut(s)	853, 1007
SmoI	CTYRAG	2 cut(s)	853, 1007
Sse9I	AATT	6 cut(s)	4, 217, 442, 746, 1065, 1072
SseBI	AGGCCT	1 cut(s)	1047
SsiI	CCGC	9 cut(s)	87, 133, 152, 158, 161, 291, 928, 979, 1165
StuI	AGGCCT	1 cut(s)	1047
StyD4I	CCNGG	3 cut(s)	322, 1109, 1131
StyI	CCWWGG	1 cut(s)	680
TaaI	ACNGT	5 cut(s)	121, 298, 398, 1226, 1272
TaiI	ACGT	1 cut(s)	243
TasI	AATT	6 cut(s)	4, 217, 442, 746, 1065, 1072
TauI	GCSGC	4 cut(s)	160, 163, 293, 930
TfiI	GAWTC	5 cut(s)	340, 509, 767, 1106, 1168
Tru1I	TTAA	2 cut(s)	729, 1188
Tru9I	TTAA	2 cut(s)	729, 1188
TscAI	CASTG	1 cut(s)	403
TseFI	GTSAC	4 cut(s)	121, 236, 398, 1014
TseI	GCWGC	4 cut(s)	154, 686, 689, 1252
Tsp45I	GTSAC	4 cut(s)	121, 236, 398, 1014
TspDTI	ATGAA	2 cut(s)	17, 858
TspGWI	ACGGA	1 cut(s)	715
TspRI	CASTG	1 cut(s)	403
VspI	ATTAAT	1 cut(s)	729
XapI	RAATTY	3 cut(s)	4, 1065, 1072
XcmI	CCANNNNNNNNNTGG	1 cut(s)	915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.