Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003609

Physical Location & Seq

Genomic Coordinates Reverse (-)

7148726 .. 7152513

Gene Structure 3788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12060.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGAGCTCTGTCCCGGCACAGTAGCTTCACCCGGCCACTACTTCACTCCTCCCCACTGTCAGTTCACTCCACCGAAAGCCATGAACTCCCTCCTCCGATCAACCCCCTTAACCAAACGCCTCCCACTCCCTCTCTTACACTCCCACTTCTCCACCACCTCCGCCACTAAACCCAAAACCCCAAACACCTACACCATCACCACCCCACGTTTCACCCCAACCTCCCCACCCCCCACCAAACCCACCTTCCCTAAACCCACCCAAGTCCCCTTCCAGCCCAAAGTCGCCAACTCCGTCCGCCTCACCGGCCACGTCCGTGCTCCTCTTCAGGTCCAGACTACCCCCGACGGAGCCTTCTGGGCCGCCACCGTTCTCACCGCGTCTTCCTCGGCTAAGTCTCTCCGGATTCCGATTGTTTTCGAGGGGGATTTGGCTCATGTTGCGAGTTTGCATGTGAAGGATGGGGACTGTGTGTTTGTTGCGGGGAGTTTGAGGTCGGATTTGAATCATCTCAATGCTAGTGAGGGTGAGGCACGTTTACAGGTTAAGGTGCATACGCTCAACTTTGTGGAGGAATCTTTTCCACTGAATAAGAGATCCAAAGATGGCAGTGAAGAAAGGAACATTGATCACACTGGTGAAAATGATGATATGAATGAATCATTGAAAGATCTCCATCTGTGGAAAGACCTTCTTGCCAAGCCTCATGAGTGGTGGGCTGTCAGGTCAAAAGAGGGTTCCCCAAAGGCTGCAGCCTTTGAGCGTAAGAGTAATGGTGAGTTATGTATCATTGATGATTCGACTCCTGAATGGATCCAGCATAAGTTAGAATCCTTGACATTTGATCAAAAACCTATGTCACATTGTTCTGAAACCAGTTCAAGGGAAGATGGGAACTCTACAGTAGGTACTTGGGAAGACCTTCTTGATAACTCAAAACAATGGAAGGACTACCGTGACCAAAAGCTTAATAAATTGGTAAAGGAAAATCATCCTGATTTCAAGCGGAAGGATGGTGGTCATTCACTCTGGCTTAACAAGGTGCCAAAGTGGGTTTTGTCAGAGCTTAAAGGCAAAGAGTTTGATGTTCCAGTTCTGAAGTCCAAACAAGCAAATGAGGGTAGAGGTGATAAATCCTGGAAGGACTTGGTGGAAAACCCAGATAAATGGTGGGATAACAGATTGCAGAAGTGGAATGCAAAAGGTCCAGACTTTAAGCACAAAGAAACCGGTGAAGCATTATGGCTTACCAATTCACCAGGATGGGCGATCCCCATGTTACCACCTTTGAAAACACAGCAGATTCTGACAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0009295 GO:0009508 GO:0009532 GO:0009536 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

439

Amino Acids

49.34

Weight (kDa)

8.74

Isoelectric Point (pI)

36.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31010 AT4G20010 AT4G20010 AT5G44785 AT5G44785
fragaria_vesca	FvH4_3g12060 FvH4_3g12060 FvH4_3g12060
malus_domestica	MD05G1254900.v1.1 MD10G1235000.v1.1
prunus_persica	Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1
pyrus_communis	pycom05g23290
rosa_chinensis	RchiOBHm_Chr2g0098041 RchiOBHm_Chr5g0019771
rosa_laevigata	RLG00000032467
rosa_multiflora	Rmu_sc0014160.1_g000001 Rmu_sc0039603.1_g000001 Rmu_ssc0000062.1_g000028
rosa_roxburghii	Rroxscaffold_1G00058360
rosa_rugosa	Rorug05G0053800 Rorug05G0053900
rosa_samantha	Rh2DG121400 Rh5AG144300 Rh5BG143000 Rh5BG296500 Rh5CG154800 Rh5DG143300 Rh5DG306000 Rh6AG080900 Rh7AG221200 Rh7DG348200
rosa_wichuraiana	Rw4G019420 Rw5G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1042
AccII	CGCG	1 cut(s)	380
AccIII	TCCGGA	1 cut(s)	402
AciI	CCGC	6 cut(s)	162, 298, 363, 378, 482, 1006
AclWI	GGATC	4 cut(s)	591, 808, 821, 1264
AcoI	YGGCCR	2 cut(s)	34, 307
AcuI	CTGAAG	2 cut(s)	311, 1118
AfaI	GTAC	1 cut(s)	910
AfiI	CCNNNNNNNGG	1 cut(s)	882
AgeI	ACCGGT	1 cut(s)	1229
AgsI	TTSAA	5 cut(s)	505, 667, 882, 1003, 1291
AjiI	CACGTC	1 cut(s)	313
AjnI	CCWGG	2 cut(s)	1136, 1258
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AleI	CACNNNNGTG	2 cut(s)	315, 636
AluBI	AGCT	4 cut(s)	7, 26, 967, 1066
AluI	AGCT	4 cut(s)	7, 26, 967, 1066
Alw21I	GWGCWC	2 cut(s)	9, 322
Alw26I	GTCTC	1 cut(s)	402
AlwI	GGATC	4 cut(s)	591, 808, 821, 1264
AlwNI	CAGNNNCTG	1 cut(s)	1306
Aor13HI	TCCGGA	1 cut(s)	402
AoxI	GGCC	3 cut(s)	34, 307, 360
ApeKI	GCWGC	2 cut(s)	749, 752
ArsI	GACNNNNNNTTYG	2 cut(s)	458, 490
AsiGI	ACCGGT	1 cut(s)	1229
Asp700I	GAANNNNTTC	2 cut(s)	579, 921
AspS9I	GGNCC	3 cut(s)	331, 360, 1205
AsuC2I	CCSGG	2 cut(s)	15, 33
AvaII	GGWCC	2 cut(s)	331, 1205
BamHI	GGATCC	1 cut(s)	813
BanI	GGYRCC	1 cut(s)	1042
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	2 cut(s)	375, 924
Bbv12I	GWGCWC	2 cut(s)	9, 322
BbvI	GCAGC	2 cut(s)	736, 764
BccI	CCATC	7 cut(s)	203, 455, 599, 684, 884, 1007, 1257
BciT130I	CCWGG	2 cut(s)	1138, 1260
BclI	TGATCA	2 cut(s)	628, 844
BcnI	CCSGG	2 cut(s)	15, 33
BcoDI	GTCTC	1 cut(s)	402
BfaI	CTAG	1 cut(s)	519
BfmI	CTRYAG	2 cut(s)	750, 900
BglI	GCCNNNNNGGC	2 cut(s)	306, 359
BglII	AGATCT	1 cut(s)	670
BisI	GCNGC	3 cut(s)	363, 750, 753
BlsI	GCNGC	3 cut(s)	364, 751, 754
Bme1390I	CCNGG	4 cut(s)	15, 33, 1138, 1260
Bme18I	GGWCC	2 cut(s)	331, 1205
BmgBI	CACGTC	1 cut(s)	313
BmgT120I	GGNCC	3 cut(s)	331, 360, 1205
BmiI	GGNNCC	4 cut(s)	352, 739, 815, 1044
BmrFI	CCNGG	4 cut(s)	15, 33, 1138, 1260
BpiI	GAAGAC	2 cut(s)	375, 924
BpuMI	CCSGG	2 cut(s)	15, 33
BsaBI	GATNNNNATC	2 cut(s)	504, 675
BsaJI	CCNNGG	1 cut(s)	387
BsaWI	WCCGGW	2 cut(s)	402, 1229
Bsc4I	CCNNNNNNNGG	1 cut(s)	882
Bse118I	RCCGGY	2 cut(s)	305, 1229
Bse1I	ACTGG	3 cut(s)	640, 876, 1091
Bse8I	GATNNNNATC	2 cut(s)	504, 675
BseAI	TCCGGA	1 cut(s)	402
BseBI	CCWGG	2 cut(s)	1138, 1260
BseDI	CCNNGG	1 cut(s)	387
BseGI	GGATG	4 cut(s)	466, 991, 1018, 1268
BseJI	GATNNNNATC	2 cut(s)	504, 675
BseLI	CCNNNNNNNGG	1 cut(s)	882
BseNI	ACTGG	3 cut(s)	640, 876, 1091
BseRI	GAGGAG	3 cut(s)	39, 83, 312
BseXI	GCAGC	2 cut(s)	736, 764
Bsh1236I	CGCG	1 cut(s)	380
BshFI	GGCC	3 cut(s)	36, 309, 362
BshNI	GGYRCC	1 cut(s)	1042
BshTI	ACCGGT	1 cut(s)	1229
BsiHKAI	GWGCWC	2 cut(s)	9, 322
BsiSI	CCGG	5 cut(s)	15, 33, 306, 403, 1230
BslFI	GGGAC	2 cut(s)	251, 479
BslI	CCNNNNNNNGG	1 cut(s)	882
BsmAI	GTCTC	1 cut(s)	402
BsmFI	GGGAC	2 cut(s)	251, 479
BsmI	GAATGC	1 cut(s)	1201
BsnI	GGCC	3 cut(s)	36, 309, 362
Bsp1286I	GDGCHC	2 cut(s)	9, 322
Bsp13I	TCCGGA	1 cut(s)	402
Bsp143I	GATC	7 cut(s)	98, 596, 628, 670, 813, 844, 1269
BspACI	CCGC	6 cut(s)	162, 298, 363, 378, 482, 1006
BspANI	GGCC	3 cut(s)	36, 309, 362
BspEI	TCCGGA	1 cut(s)	402
BspFNI	CGCG	1 cut(s)	380
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	4 cut(s)	352, 739, 815, 1044
BspMAI	CTGCAG	1 cut(s)	754
BspPI	GGATC	4 cut(s)	591, 808, 821, 1264
BspT107I	GGYRCC	1 cut(s)	1042
BsrFI	RCCGGY	2 cut(s)	305, 1229
BsrI	ACTGG	3 cut(s)	640, 876, 1091
BssAI	RCCGGY	2 cut(s)	305, 1229
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	7 cut(s)	98, 596, 628, 670, 813, 844, 1269
Bst2UI	CCWGG	2 cut(s)	1138, 1260
Bst4CI	ACNGT	6 cut(s)	22, 59, 370, 470, 904, 956
Bst6I	CTCTTC	1 cut(s)	330
BstDEI	CTNAG	1 cut(s)	393
BstF5I	GGATG	4 cut(s)	466, 991, 1018, 1268
BstFNI	CGCG	1 cut(s)	380
BstKTI	GATC	7 cut(s)	101, 599, 631, 673, 816, 847, 1272
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	7 cut(s)	98, 596, 628, 670, 813, 844, 1269
BstMWI	GCNNNNNNNGC	3 cut(s)	306, 359, 440
BstNI	CCWGG	2 cut(s)	1138, 1260
BstNSI	RCATGY	1 cut(s)	455
BstSCI	CCNGG	4 cut(s)	13, 31, 1136, 1258
BstSFI	CTRYAG	2 cut(s)	750, 900
BstUI	CGCG	1 cut(s)	380
BstV1I	GCAGC	2 cut(s)	736, 764
BstV2I	GAAGAC	2 cut(s)	375, 924
BstX2I	RGATCY	3 cut(s)	596, 670, 813
BstXI	CCANNNNNNTGG	1 cut(s)	1167
BstYI	RGATCY	3 cut(s)	596, 670, 813
BsuRI	GGCC	3 cut(s)	36, 309, 362
BtrI	CACGTC	1 cut(s)	313
BtsCI	GGATG	4 cut(s)	466, 991, 1018, 1268
BtsI	GCAGTG	1 cut(s)	616
BtsIMutI	CAGTG	4 cut(s)	55, 584, 616, 633
CaiI	CAGNNNCTG	1 cut(s)	1306
CciI	TCATGA	1 cut(s)	706
Cfr10I	RCCGGY	2 cut(s)	305, 1229
Cfr13I	GGNCC	3 cut(s)	331, 360, 1205
CseI	GACGC	1 cut(s)	369
Csp6I	GTAC	1 cut(s)	909
CspAI	ACCGGT	1 cut(s)	1229
CviAII	CATG	5 cut(s)	82, 437, 452, 707, 1276
CviQI	GTAC	1 cut(s)	909
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	7 cut(s)	100, 598, 630, 672, 815, 846, 1271
DpnII	GATC	7 cut(s)	98, 596, 628, 670, 813, 844, 1269
EaeI	YGGCCR	2 cut(s)	34, 307
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
EciI	GGCGGA	2 cut(s)	151, 287
Ecl136II	GAGCTC	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	2 cut(s)	331, 1205
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	2 cut(s)	311, 1118
EcoICRI	GAGCTC	1 cut(s)	7
EcoRII	CCWGG	2 cut(s)	1136, 1258
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	5 cut(s)	85, 440, 455, 710, 1279
FalI	AAGNNNNNCTT	4 cut(s)	678, 710, 909, 941
FaqI	GGGAC	2 cut(s)	251, 479
FatI	CATG	5 cut(s)	81, 436, 451, 706, 1275
FauI	CCCGC	1 cut(s)	475
FbaI	TGATCA	2 cut(s)	628, 844
Fnu4HI	GCNGC	3 cut(s)	363, 750, 753
FokI	GGATG	4 cut(s)	473, 978, 1025, 1275
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	3 cut(s)	363, 750, 753
FspBI	CTAG	1 cut(s)	519
GluI	GCNGC	3 cut(s)	363, 750, 753
HaeIII	GGCC	3 cut(s)	36, 309, 362
HapII	CCGG	5 cut(s)	15, 33, 306, 403, 1230
HgaI	GACGC	1 cut(s)	369
Hin1II	CATG	5 cut(s)	85, 440, 455, 710, 1279
HindIII	AAGCTT	1 cut(s)	965
HinfI	GANTC	8 cut(s)	406, 505, 575, 659, 797, 802, 830, 1303
HpaII	CCGG	5 cut(s)	15, 33, 306, 403, 1230
Hpy166II	GTNNAC	2 cut(s)	66, 539
Hpy188I	TCNGA	7 cut(s)	98, 411, 499, 871, 1063, 1098, 1308
Hpy188III	TCNNGA	7 cut(s)	334, 403, 707, 806, 926, 995, 1208
Hpy8I	GTNNAC	2 cut(s)	66, 539
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	9 cut(s)	256, 280, 364, 451, 701, 932, 940, 1003, 1135
HpyCH4III	ACNGT	6 cut(s)	22, 59, 370, 470, 904, 956
HpyCH4IV	ACGT	3 cut(s)	208, 312, 535
HpyCH4V	TGCA	5 cut(s)	451, 553, 752, 1186, 1199
HpyF10VI	GCNNNNNNNGC	3 cut(s)	306, 359, 440
HpyF3I	CTNAG	1 cut(s)	393
HpySE526I	ACGT	3 cut(s)	208, 312, 535
Hsp92II	CATG	5 cut(s)	85, 440, 455, 710, 1279
Kpn2I	TCCGGA	1 cut(s)	402
Ksp22I	TGATCA	2 cut(s)	628, 844
Kzo9I	GATC	7 cut(s)	98, 596, 628, 670, 813, 844, 1269
LmnI	GCTCC	3 cut(s)	4, 325, 350
Lsp1109I	GCAGC	2 cut(s)	736, 764
MaeI	CTAG	1 cut(s)	519
MaeII	ACGT	3 cut(s)	208, 312, 535
MaeIII	GTNAC	3 cut(s)	858, 956, 1278
MalI	GATC	7 cut(s)	100, 598, 630, 672, 815, 846, 1271
MboI	GATC	7 cut(s)	98, 596, 628, 670, 813, 844, 1269
MboII	GAAGA	5 cut(s)	317, 375, 626, 899, 929
MflI	RGATCY	3 cut(s)	596, 670, 813
MhlI	GDGCHC	2 cut(s)	9, 322
MluCI	AATT	2 cut(s)	974, 1252
MlyI	GAGTC	1 cut(s)	796
MmeI	TCCRAC	1 cut(s)	477
MroI	TCCGGA	1 cut(s)	402
MroXI	GAANNNNTTC	2 cut(s)	579, 921
MseI	TTAA	6 cut(s)	110, 546, 969, 1035, 1068, 1215
MslI	CAYNNNNRTG	4 cut(s)	315, 513, 636, 1261
MspI	CCGG	5 cut(s)	15, 33, 306, 403, 1230
MspR9I	CCNGG	4 cut(s)	15, 33, 1138, 1260
Mva1269I	GAATGC	1 cut(s)	1201
MvaI	CCWGG	2 cut(s)	1138, 1260
MvnI	CGCG	1 cut(s)	380
MwoI	GCNNNNNNNGC	3 cut(s)	306, 359, 440
NciI	CCSGG	2 cut(s)	15, 33
NdeII	GATC	7 cut(s)	98, 596, 628, 670, 813, 844, 1269
NlaIII	CATG	5 cut(s)	85, 440, 455, 710, 1279
NlaIV	GGNNCC	4 cut(s)	352, 739, 815, 1044
NmeAIII	GCCGAG	1 cut(s)	368
NmuCI	GTSAC	2 cut(s)	858, 956
NspI	RCATGY	1 cut(s)	455
OliI	CACNNNNGTG	2 cut(s)	315, 636
PagI	TCATGA	1 cut(s)	706
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PctI	GAATGC	1 cut(s)	1201
PdmI	GAANNNNTTC	2 cut(s)	579, 921
PfeI	GAWTC	7 cut(s)	406, 505, 575, 659, 797, 830, 1303
PfoI	TCCNGGA	1 cut(s)	1136
PinAI	ACCGGT	1 cut(s)	1229
PkrI	GCNGC	3 cut(s)	364, 751, 754
PleI	GAGTC	1 cut(s)	796
PpsI	GAGTC	1 cut(s)	796
Psp124BI	GAGCTC	1 cut(s)	9
Psp6I	CCWGG	2 cut(s)	1136, 1258
PspGI	CCWGG	2 cut(s)	1136, 1258
PspN4I	GGNNCC	4 cut(s)	352, 739, 815, 1044
PspPI	GGNCC	3 cut(s)	331, 360, 1205
PstI	CTGCAG	1 cut(s)	754
PstNI	CAGNNNCTG	1 cut(s)	1306
PsuI	RGATCY	3 cut(s)	596, 670, 813
RsaI	GTAC	1 cut(s)	910
RsaNI	GTAC	1 cut(s)	909
RseI	CAYNNNNRTG	4 cut(s)	315, 513, 636, 1261
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	6 cut(s)	110, 546, 969, 1035, 1068, 1215
SatI	GCNGC	3 cut(s)	363, 750, 753
Sau3AI	GATC	7 cut(s)	98, 596, 628, 670, 813, 844, 1269
Sau96I	GGNCC	3 cut(s)	331, 360, 1205
SchI	GAGTC	1 cut(s)	796
ScrFI	CCNGG	4 cut(s)	15, 33, 1138, 1260
SduI	GDGCHC	2 cut(s)	9, 322
SfcI	CTRYAG	2 cut(s)	750, 900
SinI	GGWCC	2 cut(s)	331, 1205
SmiMI	CAYNNNNRTG	4 cut(s)	315, 513, 636, 1261
Sse9I	AATT	2 cut(s)	974, 1252
SsiI	CCGC	6 cut(s)	162, 298, 363, 378, 482, 1006
SspMI	CTAG	1 cut(s)	519
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	4 cut(s)	13, 31, 1136, 1258
TaaI	ACNGT	6 cut(s)	22, 59, 370, 470, 904, 956
TaiI	ACGT	3 cut(s)	211, 315, 538
TaqI	TCGA	2 cut(s)	420, 800
TasI	AATT	2 cut(s)	974, 1252
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	7 cut(s)	406, 505, 575, 659, 797, 830, 1303
Tru1I	TTAA	6 cut(s)	110, 546, 969, 1035, 1068, 1215
Tru9I	TTAA	6 cut(s)	110, 546, 969, 1035, 1068, 1215
TscAI	CASTG	4 cut(s)	62, 591, 616, 640
TseFI	GTSAC	2 cut(s)	858, 956
TseI	GCWGC	2 cut(s)	749, 752
Tsp45I	GTSAC	2 cut(s)	858, 956
TspDTI	ATGAA	3 cut(s)	98, 668, 672
TspGWI	ACGGA	3 cut(s)	283, 305, 363
TspRI	CASTG	4 cut(s)	62, 591, 616, 640
VpaK11BI	GGWCC	2 cut(s)	331, 1205
XceI	RCATGY	1 cut(s)	455
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1167
XmnI	GAANNNNTTC	2 cut(s)	579, 921
XspI	CTAG	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.