Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003609

Physical Location & Seq

Genomic Coordinates Reverse (-)

15148350 .. 15152681

Gene Structure 4332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG144300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGAGCTCTGTTCCGGCACGGTAGCAGCAGCAACCACTGGCCACTACTTCACTCCTCTCCACTCTCAATCCCACACCCCCAGACCCAAACCCCCCAACTTTGCCATGAACTCCCTCTTCCGATCAACACCCTTAACCAAACGCCTCCCATTTCGTCCCTTACAATCCCACTACTCCACCACCACCCCCACTAAACCCAAAACCCCAAACACCTACACCATCACCACCCCTCGTTTCACTCCAAAGTCTCCACCCCCCACCAAGCCCAACTTCCCTCGCCCCCCTGAAGTCCCCTTCCAGCCCAAAGTCGCCAACTCCGTCCGCCTCATCGGCCACGTCCGTACGCCGCTTCAGGTCCAGACTACCCAAGATGGAGCTTTCTGGGCCGCCACCGTTCTCACCGCGTTTTCTTCTTCTTCTTCTTCGGCCAAGTCTCTCCGGATTCCGATTATTTTCGAGGGGGACTTGGCTCACATTGCGAGTTTACATGTGAAAGACGGTGATTATGTGTTTGTTGCTGGGAATTTGAGGTCGGATTTGAATCATCTTAATGCTAGTGAGGGTCAGGCTCGTTTGCAGGTTAAGGTGCATACACTCAACTTTGTGGAGGAATCTTTTCCAATGAATACAAGATCCAAAGATGGCAGTGAAGAAAGGACCATTGATCACACTGTGGCAAGTGAGAAGGATGATATGAATGAATCACAGAAAGATATCCTAGTGTGGAAAAATATCCTTGCGTGGAAAGATCTCCTTGCCAAGCCTCATGAGTGGTGGGACGTCAGATCGAAAGAGGGTTCCCCAAAGGCTGCAGCCTTTGAGCGTAAGAGTAATGGCGAATTACGTATGATTGATGATTCAACTCCTGAATGGATCCAACATAAGTTAGATTCCTTGACATTTGATCAGAAACCTAATTCACATAGTTCCAAAACCAGTTTGAGGGAAGATGGGGACTCTACGTTGGGTACTTGGAGAGACCTTCTTGATAATCCAAAACAATGGATGGACTACCGTGACCAAAAACGTAATAAATTGGTAAAGCGAAATCACCCTGATTTCAAGCGTAAGGATGGTGGTCATGCACTCTGGCTTAACAAGGTACCGCAGTGGGTTTTGTCGGAGCTTAAAGGCATGGAGTTTGATGTTCCAATTCTGAAGCCCAAACAAGCAAATGAGGGTAGAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0009295 GO:0009508 GO:0009532 GO:0009536 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

396

Amino Acids

44.83

Weight (kDa)

9.52

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31010 AT4G20010 AT4G20010 AT5G44785 AT5G44785
fragaria_vesca	FvH4_3g12060 FvH4_3g12060 FvH4_3g12060
malus_domestica	MD05G1254900.v1.1 MD10G1235000.v1.1
prunus_persica	Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1
pyrus_communis	pycom05g23290
rosa_chinensis	RchiOBHm_Chr2g0098041 RchiOBHm_Chr5g0019771
rosa_laevigata	RLG00000032467
rosa_multiflora	Rmu_sc0014160.1_g000001 Rmu_sc0039603.1_g000001 Rmu_ssc0000062.1_g000028
rosa_roxburghii	Rroxscaffold_1G00058360
rosa_rugosa	Rorug05G0053800 Rorug05G0053900
rosa_samantha	Rh2DG121400 Rh5AG144300 Rh5BG143000 Rh5BG296500 Rh5CG154800 Rh5DG143300 Rh5DG306000 Rh6AG080900 Rh7AG221200 Rh7DG348200
rosa_wichuraiana	Rw4G019420 Rw5G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	783
Acc36I	ACCTGC	1 cut(s)	568
Acc65I	GGTACC	1 cut(s)	1102
AccB1I	GGYRCC	1 cut(s)	1102
AccII	CGCG	1 cut(s)	404
AccIII	TCCGGA	1 cut(s)	438
AciI	CCGC	5 cut(s)	322, 347, 387, 402, 1106
AclWI	GGATC	3 cut(s)	627, 868, 881
AcoI	YGGCCR	3 cut(s)	40, 331, 426
AcsI	RAATTY	1 cut(s)	523
AcuI	CTGAAG	3 cut(s)	306, 335, 1178
AcyI	GRCGYC	1 cut(s)	780
AdeI	CACNNNGTG	1 cut(s)	673
AfaI	GTAC	3 cut(s)	343, 970, 1104
AfiI	CCNNNNNNNGG	1 cut(s)	942
AflIII	ACRYGT	1 cut(s)	487
AgsI	TTSAA	3 cut(s)	541, 861, 1063
AjiI	CACGTC	1 cut(s)	337
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	3 cut(s)	7, 377, 1126
AluI	AGCT	3 cut(s)	7, 377, 1126
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	3 cut(s)	252, 438, 972
AlwI	GGATC	3 cut(s)	627, 868, 881
Aor13HI	TCCGGA	1 cut(s)	438
AoxI	GGCC	4 cut(s)	40, 331, 384, 426
ApeKI	GCWGC	4 cut(s)	26, 29, 809, 812
ApoI	RAATTY	1 cut(s)	523
Asp700I	GAANNNNTTC	1 cut(s)	615
Asp718I	GGTACC	1 cut(s)	1102
AspS9I	GGNCC	3 cut(s)	355, 384, 657
AsuHPI	GGTGA	4 cut(s)	214, 391, 512, 1043
AvaII	GGWCC	2 cut(s)	355, 657
BaeI	ACNNNNGTAYC	2 cut(s)	1094, 1127
BalI	TGGCCA	1 cut(s)	42
BamHI	GGATCC	1 cut(s)	873
BanI	GGYRCC	1 cut(s)	1102
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	4 cut(s)	38, 41, 796, 824
BccI	CCATC	6 cut(s)	227, 365, 635, 944, 1000, 1067
BclI	TGATCA	2 cut(s)	664, 904
BcoDI	GTCTC	3 cut(s)	252, 438, 972
BfaI	CTAG	2 cut(s)	555, 719
BfmI	CTRYAG	1 cut(s)	810
BfuAI	ACCTGC	1 cut(s)	568
BglI	GCCNNNNNGGC	1 cut(s)	330
BglII	AGATCT	1 cut(s)	748
BisI	GCNGC	6 cut(s)	27, 30, 347, 387, 810, 813
BlsI	GCNGC	6 cut(s)	28, 31, 348, 388, 811, 814
Bme18I	GGWCC	2 cut(s)	355, 657
BmgBI	CACGTC	1 cut(s)	337
BmgT120I	GGNCC	3 cut(s)	355, 384, 657
BmiI	GGNNCC	3 cut(s)	799, 875, 1104
BsaAI	YACGTR	1 cut(s)	845
BsaBI	GATNNNNATC	1 cut(s)	540
BsaHI	GRCGYC	1 cut(s)	780
BsaI	GGTCTC	1 cut(s)	972
BsaWI	WCCGGW	1 cut(s)	438
Bsc4I	CCNNNNNNNGG	1 cut(s)	942
Bse1I	ACTGG	2 cut(s)	43, 936
Bse3DI	GCAATG	1 cut(s)	474
Bse8I	GATNNNNATC	1 cut(s)	540
BseAI	TCCGGA	1 cut(s)	438
BseGI	GGATG	3 cut(s)	694, 1011, 1078
BseJI	GATNNNNATC	1 cut(s)	540
BseLI	CCNNNNNNNGG	1 cut(s)	942
BseMI	GCAATG	1 cut(s)	474
BseNI	ACTGG	2 cut(s)	43, 936
BseRI	GAGGAG	1 cut(s)	45
BseXI	GCAGC	4 cut(s)	38, 41, 796, 824
BseYI	CCCAGC	1 cut(s)	518
Bsh1236I	CGCG	1 cut(s)	404
BshFI	GGCC	4 cut(s)	42, 333, 386, 428
BshNI	GGYRCC	1 cut(s)	1102
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	15, 439
BsiWI	CGTACG	1 cut(s)	341
BslFI	GGGAC	5 cut(s)	141, 275, 476, 791, 968
BslI	CCNNNNNNNGG	1 cut(s)	942
BsmAI	GTCTC	3 cut(s)	252, 438, 972
BsmFI	GGGAC	5 cut(s)	141, 275, 476, 791, 968
BsnI	GGCC	4 cut(s)	42, 333, 386, 428
Bso31I	GGTCTC	1 cut(s)	972
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp13I	TCCGGA	1 cut(s)	438
Bsp143I	GATC	7 cut(s)	122, 632, 664, 748, 785, 873, 904
BspACI	CCGC	5 cut(s)	322, 347, 387, 402, 1106
BspANI	GGCC	4 cut(s)	42, 333, 386, 428
BspEI	TCCGGA	1 cut(s)	438
BspFNI	CGCG	1 cut(s)	404
BspHI	TCATGA	1 cut(s)	766
BspLI	GGNNCC	3 cut(s)	799, 875, 1104
BspMAI	CTGCAG	1 cut(s)	814
BspMI	ACCTGC	1 cut(s)	568
BspPI	GGATC	3 cut(s)	627, 868, 881
BspT107I	GGYRCC	1 cut(s)	1102
BspTNI	GGTCTC	1 cut(s)	972
BsrDI	GCAATG	1 cut(s)	474
BsrI	ACTGG	2 cut(s)	43, 936
BssMI	GATC	7 cut(s)	122, 632, 664, 748, 785, 873, 904
BssNI	GRCGYC	1 cut(s)	780
Bst4CI	ACNGT	5 cut(s)	22, 394, 500, 673, 1016
Bst6I	CTCTTC	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	780
BstBAI	YACGTR	1 cut(s)	845
BstF5I	GGATG	3 cut(s)	694, 1011, 1078
BstFNI	CGCG	1 cut(s)	404
BstKTI	GATC	7 cut(s)	125, 635, 667, 751, 788, 876, 907
BstMAI	GTCTC	3 cut(s)	252, 438, 972
BstMBI	GATC	7 cut(s)	122, 632, 664, 748, 785, 873, 904
BstMWI	GCNNNNNNNGC	3 cut(s)	330, 383, 476
BstNSI	RCATGY	1 cut(s)	491
BstSFI	CTRYAG	1 cut(s)	810
BstSNI	TACGTA	1 cut(s)	845
BstUI	CGCG	1 cut(s)	404
BstV1I	GCAGC	4 cut(s)	38, 41, 796, 824
BstX2I	RGATCY	3 cut(s)	632, 748, 873
BstXI	CCANNNNNNTGG	1 cut(s)	1002
BstYI	RGATCY	3 cut(s)	632, 748, 873
BsuRI	GGCC	4 cut(s)	42, 333, 386, 428
BtrI	CACGTC	1 cut(s)	337
BtsCI	GGATG	3 cut(s)	694, 1011, 1078
BtsI	GCAGTG	2 cut(s)	652, 1115
BtsIMutI	CAGTG	4 cut(s)	36, 652, 669, 1115
BveI	ACCTGC	1 cut(s)	568
CciI	TCATGA	1 cut(s)	766
Cfr13I	GGNCC	3 cut(s)	355, 384, 657
Csp6I	GTAC	3 cut(s)	342, 969, 1103
CviAII	CATG	5 cut(s)	106, 488, 767, 1082, 1135
CviQI	GTAC	3 cut(s)	342, 969, 1103
DpnI	GATC	7 cut(s)	124, 634, 666, 750, 787, 875, 906
DpnII	GATC	7 cut(s)	122, 632, 664, 748, 785, 873, 904
DraIII	CACNNNGTG	1 cut(s)	673
EaeI	YGGCCR	3 cut(s)	40, 331, 426
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	1 cut(s)	311
Ecl136II	GAGCTC	1 cut(s)	7
Eco105I	TACGTA	1 cut(s)	845
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	972
Eco32I	GATATC	1 cut(s)	715
Eco47I	GGWCC	2 cut(s)	355, 657
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	3 cut(s)	306, 335, 1178
EcoICRI	GAGCTC	1 cut(s)	7
EcoRV	GATATC	1 cut(s)	715
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	5 cut(s)	109, 491, 770, 1085, 1138
FalI	AAGNNNNNCTT	4 cut(s)	254, 286, 738, 770
FaqI	GGGAC	5 cut(s)	141, 275, 476, 791, 968
FatI	CATG	5 cut(s)	105, 487, 766, 1081, 1134
FbaI	TGATCA	2 cut(s)	664, 904
Fnu4HI	GCNGC	6 cut(s)	27, 30, 347, 387, 810, 813
FokI	GGATG	3 cut(s)	701, 1018, 1085
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	6 cut(s)	27, 30, 347, 387, 810, 813
FspBI	CTAG	2 cut(s)	555, 719
GluI	GCNGC	6 cut(s)	27, 30, 347, 387, 810, 813
GsaI	CCCAGC	1 cut(s)	522
HaeIII	GGCC	4 cut(s)	42, 333, 386, 428
HapII	CCGG	2 cut(s)	15, 439
Hin1I	GRCGYC	1 cut(s)	780
Hin1II	CATG	5 cut(s)	109, 491, 770, 1085, 1138
HinfI	GANTC	7 cut(s)	442, 541, 611, 701, 857, 890, 956
HpaII	CCGG	2 cut(s)	15, 439
HphI	GGTGA	4 cut(s)	214, 391, 512, 1043
Hpy166II	GTNNAC	1 cut(s)	485
Hpy188I	TCNGA	7 cut(s)	122, 447, 535, 785, 909, 1123, 1158
Hpy188III	TCNNGA	5 cut(s)	358, 439, 767, 866, 986
Hpy8I	GTNNAC	1 cut(s)	485
HpyAV	CCTTC	3 cut(s)	304, 679, 992
HpyCH4III	ACNGT	5 cut(s)	22, 394, 500, 673, 1016
HpyCH4IV	ACGT	5 cut(s)	336, 780, 844, 962, 1027
HpyCH4V	TGCA	4 cut(s)	577, 589, 812, 1085
HpyF10VI	GCNNNNNNNGC	3 cut(s)	330, 383, 476
HpySE526I	ACGT	5 cut(s)	336, 780, 844, 962, 1027
Hsp92I	GRCGYC	1 cut(s)	780
Hsp92II	CATG	5 cut(s)	109, 491, 770, 1085, 1138
Kpn2I	TCCGGA	1 cut(s)	438
KpnI	GGTACC	1 cut(s)	1106
Ksp22I	TGATCA	2 cut(s)	664, 904
Kzo9I	GATC	7 cut(s)	122, 632, 664, 748, 785, 873, 904
LmnI	GCTCC	3 cut(s)	4, 374, 1123
Lsp1109I	GCAGC	4 cut(s)	38, 41, 796, 824
MaeI	CTAG	2 cut(s)	555, 719
MaeII	ACGT	5 cut(s)	336, 780, 844, 962, 1027
MaeIII	GTNAC	1 cut(s)	1016
MalI	GATC	7 cut(s)	124, 634, 666, 750, 787, 875, 906
MboI	GATC	7 cut(s)	122, 632, 664, 748, 785, 873, 904
MboII	GAAGA	8 cut(s)	109, 402, 405, 408, 411, 414, 662, 959
MflI	RGATCY	3 cut(s)	632, 748, 873
MhlI	GDGCHC	1 cut(s)	9
MlsI	TGGCCA	1 cut(s)	42
MluCI	AATT	5 cut(s)	523, 839, 916, 1034, 1152
MluNI	TGGCCA	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	950
MmeI	TCCRAC	3 cut(s)	513, 901, 1101
Mox20I	TGGCCA	1 cut(s)	42
MroI	TCCGGA	1 cut(s)	438
MroXI	GAANNNNTTC	1 cut(s)	615
MscI	TGGCCA	1 cut(s)	42
MseI	TTAA	5 cut(s)	134, 549, 582, 1095, 1128
MslI	CAYNNNNRTG	1 cut(s)	549
Msp20I	TGGCCA	1 cut(s)	42
MspI	CCGG	2 cut(s)	15, 439
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	3 cut(s)	330, 383, 476
NdeII	GATC	7 cut(s)	122, 632, 664, 748, 785, 873, 904
NlaIII	CATG	5 cut(s)	109, 491, 770, 1085, 1138
NlaIV	GGNNCC	3 cut(s)	799, 875, 1104
NmuCI	GTSAC	1 cut(s)	1016
NspI	RCATGY	1 cut(s)	491
PagI	TCATGA	1 cut(s)	766
PciI	ACATGT	1 cut(s)	487
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PdmI	GAANNNNTTC	1 cut(s)	615
PfeI	GAWTC	6 cut(s)	442, 541, 611, 701, 857, 890
Pfl23II	CGTACG	1 cut(s)	341
PkrI	GCNGC	6 cut(s)	28, 31, 348, 388, 811, 814
PleI	GAGTC	1 cut(s)	950
PpsI	GAGTC	1 cut(s)	950
Ppu21I	YACGTR	1 cut(s)	845
PscI	ACATGT	1 cut(s)	487
Psp124BI	GAGCTC	1 cut(s)	9
PspFI	CCCAGC	1 cut(s)	518
PspLI	CGTACG	1 cut(s)	341
PspN4I	GGNNCC	3 cut(s)	799, 875, 1104
PspPI	GGNCC	3 cut(s)	355, 384, 657
PstI	CTGCAG	1 cut(s)	814
PsuI	RGATCY	3 cut(s)	632, 748, 873
RsaI	GTAC	3 cut(s)	343, 970, 1104
RsaNI	GTAC	3 cut(s)	342, 969, 1103
RseI	CAYNNNNRTG	1 cut(s)	549
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	5 cut(s)	134, 549, 582, 1095, 1128
SatI	GCNGC	6 cut(s)	27, 30, 347, 387, 810, 813
Sau3AI	GATC	7 cut(s)	122, 632, 664, 748, 785, 873, 904
Sau96I	GGNCC	3 cut(s)	355, 384, 657
SchI	GAGTC	1 cut(s)	950
SduI	GDGCHC	1 cut(s)	9
SfcI	CTRYAG	1 cut(s)	810
SinI	GGWCC	2 cut(s)	355, 657
SmiMI	CAYNNNNRTG	1 cut(s)	549
SnaBI	TACGTA	1 cut(s)	845
Sse9I	AATT	5 cut(s)	523, 839, 916, 1034, 1152
SsiI	CCGC	5 cut(s)	322, 347, 387, 402, 1106
SspMI	CTAG	2 cut(s)	555, 719
SstI	GAGCTC	1 cut(s)	9
TaaI	ACNGT	5 cut(s)	22, 394, 500, 673, 1016
TaiI	ACGT	5 cut(s)	339, 783, 847, 965, 1030
TaqI	TCGA	2 cut(s)	456, 788
TasI	AATT	5 cut(s)	523, 839, 916, 1034, 1152
TauI	GCSGC	2 cut(s)	349, 389
TfiI	GAWTC	6 cut(s)	442, 541, 611, 701, 857, 890
Tru1I	TTAA	5 cut(s)	134, 549, 582, 1095, 1128
Tru9I	TTAA	5 cut(s)	134, 549, 582, 1095, 1128
TscAI	CASTG	4 cut(s)	43, 652, 676, 1115
TseFI	GTSAC	1 cut(s)	1016
TseI	GCWGC	4 cut(s)	26, 29, 809, 812
Tsp45I	GTSAC	1 cut(s)	1016
TspDTI	ATGAA	4 cut(s)	122, 638, 710, 714
TspGWI	ACGGA	2 cut(s)	307, 329
TspRI	CASTG	4 cut(s)	43, 652, 676, 1115
VpaK11BI	GGWCC	2 cut(s)	355, 657
XapI	RAATTY	1 cut(s)	523
XceI	RCATGY	1 cut(s)	491
XmnI	GAANNNNTTC	1 cut(s)	615
XspI	CTAG	2 cut(s)	555, 719
ZraI	GACGTC	1 cut(s)	781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.