Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003609

Physical Location & Seq

Genomic Coordinates Forward (+)

10841935 .. 10844124

Gene Structure 2190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G20010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGAGTTTGATTTCCAAATCCTTGGCAAGAATTGAATGTTCGCCATTTTTTTATCCAAGAGCTTCAGAAATCACTACCGGAAAACGGATAACCTCTCCGCAAATCCGTTTATACACTGCGGCGGCCGTCGGCGGGAAAACTGGAAATGGAGAAAGGAAACAAAGAGCCAAAGCACCGGCGAAAACTCCGGAGGCAGTGACACCTGTGAAACCGCTGGAGATTGCGTCAGTCACGGCGACGACGGAGAATGAATTGCCTCGGCCTAATGAGATAGCTTACGAGAGTGAAGTAGCGAATTGGGTTAATCTGATTGGATTTGTTGATCAACCAGTTCAATTCGAAGCTTCTTCTGATGGCAAATTCTGGGCTGGTACTGTTATTTCCCAGAGGTCTGCTTCAGATTCCTCTGGTTTCTGGATTCCGATAATATTTGAAGGCGATTTAGCTAAAACCGCAGCTCGATATGTAAGCAAAGACGATCAAATTCATGTGTCTGGGAAGCTGTTTATAGATTCTCCTCCTCCAAATATGACTTATGCACAAGCCAATGTTCAGGTATTGGTCCAGAATCTTAACTTTATACAGCCTATGTCCCCGTCTCCGTCGCCATTTATGGTTATGTCATCATCTGAAAAGGAAGAAAGTGGTATCAAGAAGCAGCCTGCTAGAGCTAAGCAGGATATAGTCATTGATGAAGCTTCAGATTCTTGGAATCACCTCATTGAAAATCCTAAAGAATGGTGGGATCACCGGGAAAATAAAGTCAATGGATTGGTAAAACCTAGGCATCCTGATTTCAAAAGCAAGGACAGTAGTTTTTCGCTGTGGCTCAATAAGGCTCCTAATTGGGTTTTGCCAAAACTCGAAGGACTCGAGTTCGATGTTCTAGTCCCTAAAGCCAGAGTTGTAAAACAACTTAAAGGAGAAGAATCATGGAAGGACTTGGTTCAGAACCCAGATAAATGGTGGGACAATAGAATCGACAAGAGAAATGCAAAAGCCCCTGATTTCAAGCACAAGGAGACAGGTGAAGCACTGTGGCTAAACGAGTCTCCTACTTGGGTATTACCGAAACTGCCACCAGTCAAGAAGAAACAAGAAAGTATTGTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0009295 GO:0009508 GO:0009532 GO:0009536 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

371

Amino Acids

41.73

Weight (kDa)

8.84

Isoelectric Point (pI)

52.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31010 AT4G20010 AT4G20010 AT5G44785 AT5G44785
fragaria_vesca	FvH4_3g12060 FvH4_3g12060 FvH4_3g12060
malus_domestica	MD05G1254900.v1.1 MD10G1235000.v1.1
prunus_persica	Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1
pyrus_communis	pycom05g23290
rosa_chinensis	RchiOBHm_Chr2g0098041 RchiOBHm_Chr5g0019771
rosa_laevigata	RLG00000032467
rosa_multiflora	Rmu_sc0014160.1_g000001 Rmu_sc0039603.1_g000001 Rmu_ssc0000062.1_g000028
rosa_roxburghii	Rroxscaffold_1G00058360
rosa_rugosa	Rorug05G0053800 Rorug05G0053900
rosa_samantha	Rh2DG121400 Rh5AG144300 Rh5BG143000 Rh5BG296500 Rh5CG154800 Rh5DG143300 Rh5DG306000 Rh6AG080900 Rh7AG221200 Rh7DG348200
rosa_wichuraiana	Rw4G019420 Rw5G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	187
AciI	CCGC	6 cut(s)	98, 119, 122, 132, 212, 453
AclWI	GGATC	1 cut(s)	753
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	2 cut(s)	359, 483
AcuI	CTGAAG	3 cut(s)	48, 381, 684
AfaI	GTAC	1 cut(s)	373
AfiI	CCNNNNNNNGG	2 cut(s)	84, 132
AgsI	TTSAA	6 cut(s)	35, 335, 434, 725, 799, 1012
AluBI	AGCT	8 cut(s)	62, 275, 344, 446, 458, 502, 671, 698
AluI	AGCT	8 cut(s)	62, 275, 344, 446, 458, 502, 671, 698
Alw26I	GTCTC	3 cut(s)	603, 1016, 1056
AlwI	GGATC	1 cut(s)	753
Ama87I	CYCGRG	1 cut(s)	872
Aor13HI	TCCGGA	1 cut(s)	187
AoxI	GGCC	2 cut(s)	123, 260
ApeKI	GCWGC	2 cut(s)	455, 658
ApoI	RAATTY	2 cut(s)	359, 483
AspA2I	CCTAGG	1 cut(s)	782
AspS9I	GGNCC	1 cut(s)	562
AsuC2I	CCSGG	1 cut(s)	752
AsuHPI	GGTGA	3 cut(s)	707, 740, 1040
AsuII	TTCGAA	1 cut(s)	339
AvaI	CYCGRG	1 cut(s)	872
AvaII	GGWCC	1 cut(s)	562
AvrII	CCTAGG	1 cut(s)	782
BbvI	GCAGC	2 cut(s)	467, 670
BccI	CCATC	1 cut(s)	347
BceAI	ACGGC	2 cut(s)	110, 249
BclI	TGATCA	1 cut(s)	322
BcnI	CCSGG	1 cut(s)	752
BcoDI	GTCTC	3 cut(s)	603, 1016, 1056
BfaI	CTAG	3 cut(s)	666, 783, 887
BisI	GCNGC	4 cut(s)	120, 123, 456, 659
BlnI	CCTAGG	1 cut(s)	782
BlpI	GCTNAGC	1 cut(s)	672
BlsI	GCNGC	4 cut(s)	121, 124, 457, 660
Bme1390I	CCNGG	1 cut(s)	752
Bme18I	GGWCC	1 cut(s)	562
BmeT110I	CYCGRG	1 cut(s)	872
BmgT120I	GGNCC	1 cut(s)	562
BmiI	GGNNCC	1 cut(s)	840
BmrFI	CCNGG	1 cut(s)	752
BmsI	GCATC	1 cut(s)	796
BpmI	CTGGAG	1 cut(s)	236
Bpu1102I	GCTNAGC	1 cut(s)	672
Bpu14I	TTCGAA	1 cut(s)	339
BpuMI	CCSGG	1 cut(s)	752
BsaJI	CCNNGG	3 cut(s)	21, 257, 782
BsaWI	WCCGGW	2 cut(s)	77, 187
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 132
Bse118I	RCCGGY	1 cut(s)	175
Bse1I	ACTGG	3 cut(s)	145, 329, 1082
BseAI	TCCGGA	1 cut(s)	187
BseDI	CCNNGG	3 cut(s)	21, 257, 782
BseGI	GGATG	1 cut(s)	787
BseLI	CCNNNNNNNGG	2 cut(s)	84, 132
BseNI	ACTGG	3 cut(s)	145, 329, 1082
BseRI	GAGGAG	2 cut(s)	507, 510
BseX3I	CGGCCG	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	467, 670
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	2 cut(s)	125, 262
BsiEI	CGRYCG	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	872
BsiSI	CCGG	4 cut(s)	78, 176, 188, 751
BslFI	GGGAC	3 cut(s)	577, 875, 983
BslI	CCNNNNNNNGG	2 cut(s)	84, 132
BsmAI	GTCTC	3 cut(s)	603, 1016, 1056
BsmBI	CGTCTC	1 cut(s)	603
BsmFI	GGGAC	3 cut(s)	577, 875, 983
BsnI	GGCC	2 cut(s)	125, 262
BsoBI	CYCGRG	1 cut(s)	872
Bsp119I	TTCGAA	1 cut(s)	339
Bsp13I	TCCGGA	1 cut(s)	187
Bsp143I	GATC	3 cut(s)	322, 478, 745
Bsp1720I	GCTNAGC	1 cut(s)	672
BspACI	CCGC	6 cut(s)	98, 119, 122, 132, 212, 453
BspANI	GGCC	2 cut(s)	125, 262
BspEI	TCCGGA	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	840
BspPI	GGATC	1 cut(s)	753
BspT104I	TTCGAA	1 cut(s)	339
BsrFI	RCCGGY	1 cut(s)	175
BsrI	ACTGG	3 cut(s)	145, 329, 1082
BssAI	RCCGGY	1 cut(s)	175
BssECI	CCNNGG	3 cut(s)	21, 257, 782
BssMI	GATC	3 cut(s)	322, 478, 745
BssT1I	CCWWGG	2 cut(s)	21, 782
Bst4CI	ACNGT	3 cut(s)	376, 812, 1038
BstBI	TTCGAA	1 cut(s)	339
BstC8I	GCNNGC	1 cut(s)	663
BstDEI	CTNAG	1 cut(s)	672
BstF5I	GGATG	1 cut(s)	787
BstKTI	GATC	3 cut(s)	325, 481, 748
BstMAI	GTCTC	3 cut(s)	603, 1016, 1056
BstMBI	GATC	3 cut(s)	322, 478, 745
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstSCI	CCNGG	1 cut(s)	750
BstV1I	GCAGC	2 cut(s)	467, 670
BstXI	CCANNNNNNTGG	2 cut(s)	22, 963
BstZI	CGGCCG	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	125, 262
BtsCI	GGATG	1 cut(s)	787
BtsI	GCAGTG	2 cut(s)	114, 201
BtsIMutI	CAGTG	3 cut(s)	114, 201, 1034
Cac8I	GCNNGC	1 cut(s)	663
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	562
CseI	GACGC	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	372
CviAII	CATG	2 cut(s)	488, 933
CviQI	GTAC	1 cut(s)	372
DdeI	CTNAG	1 cut(s)	672
DpnI	GATC	3 cut(s)	324, 480, 747
DpnII	GATC	3 cut(s)	322, 478, 745
EaeI	YGGCCR	1 cut(s)	123
EagI	CGGCCG	1 cut(s)	123
EclXI	CGGCCG	1 cut(s)	123
Eco130I	CCWWGG	2 cut(s)	21, 782
Eco47I	GGWCC	1 cut(s)	562
Eco52I	CGGCCG	1 cut(s)	123
Eco57I	CTGAAG	3 cut(s)	48, 381, 684
Eco88I	CYCGRG	1 cut(s)	872
EcoT14I	CCWWGG	2 cut(s)	21, 782
ErhI	CCWWGG	2 cut(s)	21, 782
Esp3I	CGTCTC	1 cut(s)	603
FaeI	CATG	2 cut(s)	491, 936
FaqI	GGGAC	3 cut(s)	577, 875, 983
FatI	CATG	2 cut(s)	487, 932
FauI	CCCGC	1 cut(s)	125
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	4 cut(s)	120, 123, 456, 659
FokI	GGATG	1 cut(s)	774
Fsp4HI	GCNGC	4 cut(s)	120, 123, 456, 659
FspBI	CTAG	3 cut(s)	666, 783, 887
GluI	GCNGC	4 cut(s)	120, 123, 456, 659
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	2 cut(s)	125, 262
HapII	CCGG	4 cut(s)	78, 176, 188, 751
HgaI	GACGC	1 cut(s)	213
Hin1II	CATG	2 cut(s)	491, 936
HindIII	AAGCTT	2 cut(s)	342, 696
HpaII	CCGG	4 cut(s)	78, 176, 188, 751
HphI	GGTGA	3 cut(s)	707, 740, 1040
Hpy188I	TCNGA	8 cut(s)	67, 309, 352, 400, 423, 631, 703, 951
Hpy188III	TCNNGA	6 cut(s)	188, 415, 565, 652, 791, 1087
Hpy99I	CGWCG	4 cut(s)	131, 241, 244, 607
HpyAV	CCTTC	3 cut(s)	428, 860, 931
HpyCH4III	ACNGT	3 cut(s)	376, 812, 1038
HpyCH4V	TGCA	2 cut(s)	539, 995
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	1 cut(s)	672
Hsp92II	CATG	2 cut(s)	491, 936
Kpn2I	TCCGGA	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	3 cut(s)	322, 478, 745
LmnI	GCTCC	1 cut(s)	844
Lsp1109I	GCAGC	2 cut(s)	467, 670
LweI	GCATC	1 cut(s)	796
MaeI	CTAG	3 cut(s)	666, 783, 887
MaeIII	GTNAC	2 cut(s)	196, 229
MalI	GATC	3 cut(s)	324, 480, 747
MboI	GATC	3 cut(s)	322, 478, 745
MboII	GAAGA	4 cut(s)	339, 650, 938, 1102
MluCI	AATT	7 cut(s)	30, 251, 295, 335, 359, 483, 844
MlyI	GAGTC	2 cut(s)	864, 1058
MnlI	CCTC	8 cut(s)	103, 184, 267, 381, 415, 528, 531, 728
MroI	TCCGGA	1 cut(s)	187
MseI	TTAA	3 cut(s)	303, 573, 918
MspA1I	CMGCKG	1 cut(s)	214
MspI	CCGG	4 cut(s)	78, 176, 188, 751
MspR9I	CCNGG	1 cut(s)	752
MwoI	GCNNNNNNNGC	1 cut(s)	452
NciI	CCSGG	1 cut(s)	752
NdeII	GATC	3 cut(s)	322, 478, 745
NlaIII	CATG	2 cut(s)	491, 936
NlaIV	GGNNCC	1 cut(s)	840
NmeAIII	GCCGAG	1 cut(s)	238
NmuCI	GTSAC	2 cut(s)	196, 229
NspV	TTCGAA	1 cut(s)	339
PaeR7I	CTCGAG	1 cut(s)	872
PcsI	WCGNNNNNNNCGW	1 cut(s)	870
PfeI	GAWTC	8 cut(s)	401, 418, 512, 568, 704, 712, 929, 978
PkrI	GCNGC	4 cut(s)	121, 124, 457, 660
PleI	GAGTC	2 cut(s)	864, 1057
PpsI	GAGTC	2 cut(s)	864, 1057
PspN4I	GGNNCC	1 cut(s)	840
PspPI	GGNCC	1 cut(s)	562
PspXI	VCTCGAGB	1 cut(s)	872
RsaI	GTAC	1 cut(s)	373
RsaNI	GTAC	1 cut(s)	372
SaqAI	TTAA	3 cut(s)	303, 573, 918
SatI	GCNGC	4 cut(s)	120, 123, 456, 659
Sau3AI	GATC	3 cut(s)	322, 478, 745
Sau96I	GGNCC	1 cut(s)	562
SchI	GAGTC	2 cut(s)	864, 1058
ScrFI	CCNGG	1 cut(s)	752
SfaNI	GCATC	1 cut(s)	796
Sfr274I	CTCGAG	1 cut(s)	872
SfuI	TTCGAA	1 cut(s)	339
SgrAI	CRCCGGYG	1 cut(s)	175
SinI	GGWCC	1 cut(s)	562
SlaI	CTCGAG	1 cut(s)	872
SmlI	CTYRAG	1 cut(s)	872
SmoI	CTYRAG	1 cut(s)	872
Sse9I	AATT	7 cut(s)	30, 251, 295, 335, 359, 483, 844
SsiI	CCGC	6 cut(s)	98, 119, 122, 132, 212, 453
SspI	AATATT	1 cut(s)	429
SspMI	CTAG	3 cut(s)	666, 783, 887
StyD4I	CCNGG	1 cut(s)	750
StyI	CCWWGG	2 cut(s)	21, 782
TaaI	ACNGT	3 cut(s)	376, 812, 1038
TaqI	TCGA	6 cut(s)	339, 460, 864, 873, 879, 981
TasI	AATT	7 cut(s)	30, 251, 295, 335, 359, 483, 844
TauI	GCSGC	2 cut(s)	122, 125
TfiI	GAWTC	8 cut(s)	401, 418, 512, 568, 704, 712, 929, 978
Tru1I	TTAA	3 cut(s)	303, 573, 918
Tru9I	TTAA	3 cut(s)	303, 573, 918
TscAI	CASTG	3 cut(s)	121, 201, 1041
TseFI	GTSAC	2 cut(s)	196, 229
TseI	GCWGC	2 cut(s)	455, 658
Tsp45I	GTSAC	2 cut(s)	196, 229
TspDTI	ATGAA	3 cut(s)	264, 476, 708
TspGWI	ACGGA	4 cut(s)	95, 100, 257, 591
TspRI	CASTG	3 cut(s)	121, 201, 1041
VpaK11BI	GGWCC	1 cut(s)	562
XapI	RAATTY	2 cut(s)	359, 483
XcmI	CCANNNNNNNNNTGG	1 cut(s)	963
XhoI	CTCGAG	1 cut(s)	872
XmaJI	CCTAGG	1 cut(s)	782
XspI	CTAG	3 cut(s)	666, 783, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.