Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003609

Physical Location & Seq

Genomic Coordinates Forward (+)

33108168 .. 33110829

Gene Structure 2662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1235000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCCTTACTTCTTCTCCAATCCCACTTCTCCACCACCGCAGCTAAACCCCAAACCCCAAACACTCACACCGTCACTAGACTCCGCTTCAAGTCCAAACCACCGCAGCCGCCGCCGCCAAACCCCGATTTGCTGCCGCGCCCGACCCAAGTCCCCTTCCAGCCAAAGGTCGCCAATGCGGTGCGCACTCCTCTTCACGTCGTCCGTACCCCTGATGGCAAAGTCTTGGTAGCCACCGTTCTCACCTCCTCTTCTCCCTCTCCGGCTAATTCTCTCCGGATTCCCATCGTCTTTGAGGGCGACTTGGCTAATACTGCTGATTTGCATTTGAAAGACAGTGACTTTGTGTTTGTTGCTGGGAGTTTGAGGTCGGATTTGGACCATTTGAATGCTGGGGAGGACCAGGGTCGTCTCCAGGTTTTGGTGCATACCCTCTACTTTGTTGAAGAATCTTCACAACTAAATAAAAGCTCTAAAGCTGACAGACAAGAAGAAAGGACTACCGATCACACCGTCATGGAAGAAAGACACCTTCTCGCATGGAAAGATTTGAAAGAGGATCCAAAAGATGCAGCATTTGAACGGAAGAACAATGGAGAATCACATTGGATTAATGACAAAACTCCTGAATTGATCCTAAATAAGTCAGGTTCATTGGCATTTGGTAAAAAACCTATACCAGAGAGTCAGAAACCAATACCAGAGAGTCGTGAAACCAGCTTGAGGAATGATGGGGACTGTACGTTAGGTTCTTGGAGTGATCTTCTTAGTAATCCAAAACAGTGGTGGGACTGCCGCAGTAAGAAGCTCAATGGATTGGTGACGATTCCTTGGAATGTCTTCGTTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0009295 GO:0009508 GO:0009532 GO:0009536 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

284

Amino Acids

31.64

Weight (kDa)

7.83

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31010 AT4G20010 AT4G20010 AT5G44785 AT5G44785
fragaria_vesca	FvH4_3g12060 FvH4_3g12060 FvH4_3g12060
malus_domestica	MD05G1254900.v1.1 MD10G1235000.v1.1
prunus_persica	Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1
pyrus_communis	pycom05g23290
rosa_chinensis	RchiOBHm_Chr2g0098041 RchiOBHm_Chr5g0019771
rosa_laevigata	RLG00000032467
rosa_multiflora	Rmu_sc0014160.1_g000001 Rmu_sc0039603.1_g000001 Rmu_ssc0000062.1_g000028
rosa_roxburghii	Rroxscaffold_1G00058360
rosa_rugosa	Rorug05G0053800 Rorug05G0053900
rosa_samantha	Rh2DG121400 Rh5AG144300 Rh5BG143000 Rh5BG296500 Rh5CG154800 Rh5DG143300 Rh5DG306000 Rh6AG080900 Rh7AG221200 Rh7DG348200
rosa_wichuraiana	Rw4G019420 Rw5G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	185
AccB7I	CCANNNNNTGG	1 cut(s)	421
AccII	CGCG	1 cut(s)	139
AccIII	TCCGGA	1 cut(s)	276
AciI	CCGC	9 cut(s)	39, 85, 104, 110, 113, 116, 137, 179, 796
AclWI	GGATC	3 cut(s)	554, 567, 628
AfaI	GTAC	2 cut(s)	208, 742
AfiI	CCNNNNNNNGG	3 cut(s)	166, 421, 723
AgsI	TTSAA	6 cut(s)	91, 331, 388, 446, 553, 581
AjiI	CACGTC	1 cut(s)	199
AjnI	CCWGG	2 cut(s)	402, 414
AluBI	AGCT	5 cut(s)	44, 471, 479, 720, 808
AluI	AGCT	5 cut(s)	44, 471, 479, 720, 808
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	3 cut(s)	554, 567, 628
Aor13HI	TCCGGA	1 cut(s)	276
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	41, 106, 133, 572
ArsI	GACNNNNNNTTYG	4 cut(s)	326, 332, 358, 364
AseI	ATTAAT	1 cut(s)	612
Asp700I	GAANNNNTTC	1 cut(s)	839
AspLEI	GCGC	2 cut(s)	141, 186
AspS9I	GGNCC	2 cut(s)	379, 400
AsuHPI	GGTGA	2 cut(s)	235, 832
AvaII	GGWCC	2 cut(s)	379, 400
BamHI	GGATCC	1 cut(s)	559
BbsI	GAAGAC	1 cut(s)	832
BbvI	GCAGC	4 cut(s)	53, 118, 120, 584
BccI	CCATC	3 cut(s)	209, 293, 725
BciT130I	CCWGG	2 cut(s)	404, 416
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	1 cut(s)	78
BisI	GCNGC	9 cut(s)	42, 107, 110, 113, 116, 134, 137, 573, 796
BlsI	GCNGC	9 cut(s)	43, 108, 111, 114, 117, 135, 138, 574, 797
Bme1390I	CCNGG	2 cut(s)	404, 416
Bme18I	GGWCC	2 cut(s)	379, 400
BmgBI	CACGTC	1 cut(s)	199
BmgT120I	GGNCC	2 cut(s)	379, 400
BmiI	GGNNCC	1 cut(s)	561
BmrFI	CCNGG	2 cut(s)	404, 416
BmsI	GCATC	1 cut(s)	559
BoxI	GACNNNNGTC	2 cut(s)	149, 405
BpiI	GAAGAC	1 cut(s)	832
BpmI	CTGGAG	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	742
BsaBI	GATNNNNATC	1 cut(s)	284
BsaJI	CCNNGG	2 cut(s)	403, 830
BsaWI	WCCGGW	1 cut(s)	276
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 421, 723
Bse8I	GATNNNNATC	1 cut(s)	284
BseAI	TCCGGA	1 cut(s)	276
BseBI	CCWGG	2 cut(s)	404, 416
BseDI	CCNNGG	2 cut(s)	403, 830
BseJI	GATNNNNATC	1 cut(s)	284
BseLI	CCNNNNNNNGG	3 cut(s)	166, 421, 723
BseRI	GAGGAG	2 cut(s)	180, 238
BseXI	GCAGC	4 cut(s)	53, 118, 120, 584
BseYI	CCCAGC	2 cut(s)	356, 392
Bsh1236I	CGCG	1 cut(s)	139
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	2 cut(s)	263, 277
BslFI	GGGAC	3 cut(s)	137, 749, 803
BslI	CCNNNNNNNGG	3 cut(s)	166, 421, 723
BsmAI	GTCTC	1 cut(s)	416
BsmBI	CGTCTC	1 cut(s)	416
BsmFI	GGGAC	3 cut(s)	137, 749, 803
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	1 cut(s)	5
Bsp13I	TCCGGA	1 cut(s)	276
Bsp143I	GATC	4 cut(s)	505, 559, 633, 760
BspACI	CCGC	9 cut(s)	39, 85, 104, 110, 113, 116, 137, 179, 796
BspANI	GGCC	1 cut(s)	5
BspEI	TCCGGA	1 cut(s)	276
BspFNI	CGCG	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	561
BspPI	GGATC	3 cut(s)	554, 567, 628
BssECI	CCNNGG	2 cut(s)	403, 830
BssMI	GATC	4 cut(s)	505, 559, 633, 760
BssT1I	CCWWGG	1 cut(s)	830
Bst2UI	CCWGG	2 cut(s)	404, 416
Bst4CI	ACNGT	6 cut(s)	73, 238, 338, 514, 740, 783
Bst6I	CTCTTC	2 cut(s)	198, 256
BstDEI	CTNAG	1 cut(s)	767
BstFNI	CGCG	1 cut(s)	139
BstHHI	GCGC	2 cut(s)	141, 186
BstKTI	GATC	4 cut(s)	508, 562, 636, 763
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	4 cut(s)	505, 559, 633, 760
BstMWI	GCNNNNNNNGC	3 cut(s)	112, 115, 314
BstNI	CCWGG	2 cut(s)	404, 416
BstPAI	GACNNNNGTC	2 cut(s)	149, 405
BstSCI	CCNGG	2 cut(s)	402, 414
BstUI	CGCG	1 cut(s)	139
BstV1I	GCAGC	4 cut(s)	53, 118, 120, 584
BstV2I	GAAGAC	1 cut(s)	832
BstX2I	RGATCY	1 cut(s)	559
BstXI	CCANNNNNNTGG	1 cut(s)	783
BstYI	RGATCY	1 cut(s)	559
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	1 cut(s)	199
BtsIMutI	CAGTG	2 cut(s)	343, 788
CfoI	GCGC	2 cut(s)	141, 186
Cfr13I	GGNCC	2 cut(s)	379, 400
Csp6I	GTAC	2 cut(s)	207, 741
CviAII	CATG	2 cut(s)	517, 540
CviQI	GTAC	2 cut(s)	207, 741
DdeI	CTNAG	1 cut(s)	767
DpnI	GATC	4 cut(s)	507, 561, 635, 762
DpnII	GATC	4 cut(s)	505, 559, 633, 760
Eam1104I	CTCTTC	2 cut(s)	198, 256
EarI	CTCTTC	2 cut(s)	198, 256
Eco130I	CCWWGG	1 cut(s)	830
Eco47I	GGWCC	2 cut(s)	379, 400
EcoRII	CCWGG	2 cut(s)	402, 414
EcoT14I	CCWWGG	1 cut(s)	830
ErhI	CCWWGG	1 cut(s)	830
Esp3I	CGTCTC	1 cut(s)	416
FaeI	CATG	2 cut(s)	520, 543
FaiI	YATR	4 cut(s)	429, 518, 541, 677
FaqI	GGGAC	3 cut(s)	137, 749, 803
FatI	CATG	2 cut(s)	516, 539
Fnu4HI	GCNGC	9 cut(s)	42, 107, 110, 113, 116, 134, 137, 573, 796
Fsp4HI	GCNGC	9 cut(s)	42, 107, 110, 113, 116, 134, 137, 573, 796
FspAI	RTGCGCAY	1 cut(s)	185
FspBI	CTAG	1 cut(s)	78
FspI	TGCGCA	1 cut(s)	185
GlaI	GCGC	2 cut(s)	140, 185
GluI	GCNGC	9 cut(s)	42, 107, 110, 113, 116, 134, 137, 573, 796
GsaI	CCCAGC	2 cut(s)	360, 396
GsuI	CTGGAG	1 cut(s)	398
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	263, 277
HhaI	GCGC	2 cut(s)	141, 186
Hin1II	CATG	2 cut(s)	520, 543
Hin6I	GCGC	2 cut(s)	139, 184
HinP1I	GCGC	2 cut(s)	139, 184
HinfI	GANTC	7 cut(s)	81, 280, 449, 599, 685, 706, 826
HpaII	CCGG	2 cut(s)	263, 277
HphI	GGTGA	2 cut(s)	235, 832
Hpy188I	TCNGA	3 cut(s)	373, 690, 851
Hpy188III	TCNNGA	3 cut(s)	277, 626, 710
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	2 cut(s)	166, 542
HpyCH4III	ACNGT	6 cut(s)	73, 238, 338, 514, 740, 783
HpyCH4IV	ACGT	2 cut(s)	198, 743
HpyCH4V	TGCA	3 cut(s)	325, 427, 572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	112, 115, 314
HpyF3I	CTNAG	1 cut(s)	767
HpySE526I	ACGT	2 cut(s)	198, 743
Hsp92II	CATG	2 cut(s)	520, 543
HspAI	GCGC	2 cut(s)	139, 184
Kpn2I	TCCGGA	1 cut(s)	276
Kzo9I	GATC	4 cut(s)	505, 559, 633, 760
Lsp1109I	GCAGC	4 cut(s)	53, 118, 120, 584
LweI	GCATC	1 cut(s)	559
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	2 cut(s)	198, 743
MaeIII	GTNAC	3 cut(s)	73, 338, 820
MalI	GATC	4 cut(s)	507, 561, 635, 762
MboI	GATC	4 cut(s)	505, 559, 633, 760
MflI	RGATCY	1 cut(s)	559
MluCI	AATT	2 cut(s)	268, 629
MlyI	GAGTC	3 cut(s)	75, 694, 715
MmeI	TCCRAC	1 cut(s)	351
MroI	TCCGGA	1 cut(s)	276
MroXI	GAANNNNTTC	1 cut(s)	839
MseI	TTAA	1 cut(s)	612
MslI	CAYNNNNRTG	2 cut(s)	387, 515
MspI	CCGG	2 cut(s)	263, 277
MspR9I	CCNGG	2 cut(s)	404, 416
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	2 cut(s)	404, 416
MvnI	CGCG	1 cut(s)	139
MwoI	GCNNNNNNNGC	3 cut(s)	112, 115, 314
NdeII	GATC	4 cut(s)	505, 559, 633, 760
NlaIII	CATG	2 cut(s)	520, 543
NlaIV	GGNNCC	1 cut(s)	561
NmuCI	GTSAC	3 cut(s)	73, 338, 820
NsbI	TGCGCA	1 cut(s)	185
PctI	GAATGC	1 cut(s)	394
PdmI	GAANNNNTTC	1 cut(s)	839
PfeI	GAWTC	4 cut(s)	280, 449, 599, 826
PflMI	CCANNNNNTGG	1 cut(s)	421
PkrI	GCNGC	9 cut(s)	43, 108, 111, 114, 117, 135, 138, 574, 797
PleI	GAGTC	3 cut(s)	75, 693, 714
PpsI	GAGTC	3 cut(s)	75, 693, 714
PshAI	GACNNNNGTC	2 cut(s)	149, 405
PshBI	ATTAAT	1 cut(s)	612
Psp6I	CCWGG	2 cut(s)	402, 414
PspFI	CCCAGC	2 cut(s)	356, 392
PspGI	CCWGG	2 cut(s)	402, 414
PspN4I	GGNNCC	1 cut(s)	561
PspPI	GGNCC	2 cut(s)	379, 400
PsrI	GAACNNNNNNTAC	4 cut(s)	222, 254, 733, 765
PsuI	RGATCY	1 cut(s)	559
RsaI	GTAC	2 cut(s)	208, 742
RsaNI	GTAC	2 cut(s)	207, 741
RseI	CAYNNNNRTG	2 cut(s)	387, 515
SaqAI	TTAA	1 cut(s)	612
SatI	GCNGC	9 cut(s)	42, 107, 110, 113, 116, 134, 137, 573, 796
Sau3AI	GATC	4 cut(s)	505, 559, 633, 760
Sau96I	GGNCC	2 cut(s)	379, 400
SchI	GAGTC	3 cut(s)	75, 694, 715
ScrFI	CCNGG	2 cut(s)	404, 416
SfaNI	GCATC	1 cut(s)	559
SinI	GGWCC	2 cut(s)	379, 400
SmiMI	CAYNNNNRTG	2 cut(s)	387, 515
SmlI	CTYRAG	1 cut(s)	721
SmoI	CTYRAG	1 cut(s)	721
Sse9I	AATT	2 cut(s)	268, 629
SsiI	CCGC	9 cut(s)	39, 85, 104, 110, 113, 116, 137, 179, 796
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	402, 414
StyI	CCWWGG	1 cut(s)	830
TaaI	ACNGT	6 cut(s)	73, 238, 338, 514, 740, 783
TaiI	ACGT	2 cut(s)	201, 746
TasI	AATT	2 cut(s)	268, 629
TauI	GCSGC	5 cut(s)	112, 115, 118, 139, 798
TfiI	GAWTC	4 cut(s)	280, 449, 599, 826
Tru1I	TTAA	1 cut(s)	612
Tru9I	TTAA	1 cut(s)	612
TscAI	CASTG	2 cut(s)	343, 788
TseFI	GTSAC	3 cut(s)	73, 338, 820
TseI	GCWGC	4 cut(s)	41, 106, 133, 572
Tsp45I	GTSAC	3 cut(s)	73, 338, 820
TspDTI	ATGAA	1 cut(s)	642
TspGWI	ACGGA	2 cut(s)	194, 598
TspRI	CASTG	2 cut(s)	343, 788
Van91I	CCANNNNNTGG	1 cut(s)	421
VpaK11BI	GGWCC	2 cut(s)	379, 400
VspI	ATTAAT	1 cut(s)	612
XcmI	CCANNNNNNNNNTGG	2 cut(s)	389, 783
XmnI	GAANNNNTTC	1 cut(s)	839
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.