Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003609

Physical Location & Seq

Genomic Coordinates Reverse (-)

5702769 .. 5706944

Gene Structure 4176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G108900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGAATTCAATATGCAGAGCAATAACAAAAAAAAAACGCCTTATTCTCTTGCGTCCCCTACAGCTTCTGCAATCTCACTACGCCACCACCACTGGAAAAACTAAACCCAAAACCCAAAACACTAAAACCATCACTAAACCTCCTCCTTCCGAACCACCACAACAACCACCGCCAAAGGTCGATTGGCCGAGGCCGGTCGAAGTCCCGTTCCAGCCGAAGGTTGCCAATTCAGTGCGCCTCATTGGTCACGTGCATACCCCTCTTCAATCCCAAGCTACCCCCGATGGGAACGTTTGGGCTGCCACCATTCTCTCCTCTTCTTCATCTTCGTCTCATTCTCTAAAGATGCCCATAATATTTGAGGGTGACTTGGCTCATATTGCCAGTTTGCATTTGAAAGAGAATGACTTTGTGTTTGTAGCTGGAAGTTTGAGGTCGGATTTGCTTCATCTAAATGCTAGTAAGGGCCAGACCCCTCTTCAGGTTATGGTGCATACTCTTTACTTTGTCGAAGAATCTTCTCAAACGAAAAAAAGCTCTAAAGATGACAGACAAGAAGAAAAGACCATTGATCACACAGTAGCAGCGGGTGTAAAGGAGGACGTGGAGAAATCATGGAAAAATCTCCTCACATGGAAAGATCTCCTTGCCAAGCCTCATGAGTGGTGGGACATCAGGTTGAAAGAGGATAATCCGAAGGCTGCAGCATTTGAACGGAAGAATAATGGCGAAGTACTTCGGATTGACGACTCAACTCCTGAATGGATCCGAAATAAGTTAGATTCCACAACATTTGATCAGAAACCTATATCAGATAGTTGTGAAACCAGCTTGAAGAAAGATGGGGATTCTACGTTAGGTCCTTGGAGAGACCTTCTTGATAATCCAAAACAGTGGCGGGATTACCGCAAACCCAAGCTCAATGGATTGGTAAACCCGAACCACCCTGATTTCAAGAGCAAGGATGGTAGTCATGCACTCTGGCTTAACAAGGCACCACAGCCGGTTTTGTCAGAACTTGAAGGCATGGAGTTTGATGTTCAAATTCAGAAGTCAAAACAAGCAAAGGAGAGTAGAGGTGATGAGTCCTGGAAGGACTTGGTGGAAAACCCGGGTAAATGGTGGGATAATAGATTGGAAAAGAGGAACAAAAAAGGTCCGGACTTTAAACACAAAGAAACTGGTGAAGCACTATGGCTCAGCAGTTCTCCGGCATGGGTGCTACCTAAGCTGCCACCTTTAAGAACTAAGCAAGCTGTGACGATTGGCAATACGCCTCCCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0009295 GO:0009508 GO:0009532 GO:0009536 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

429

Amino Acids

48.47

Weight (kDa)

9.32

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31010 AT4G20010 AT4G20010 AT5G44785 AT5G44785
fragaria_vesca	FvH4_3g12060 FvH4_3g12060 FvH4_3g12060
malus_domestica	MD05G1254900.v1.1 MD10G1235000.v1.1
prunus_persica	Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1
pyrus_communis	pycom05g23290
rosa_chinensis	RchiOBHm_Chr2g0098041 RchiOBHm_Chr5g0019771
rosa_laevigata	RLG00000032467
rosa_multiflora	Rmu_sc0014160.1_g000001 Rmu_sc0039603.1_g000001 Rmu_ssc0000062.1_g000028
rosa_roxburghii	Rroxscaffold_1G00058360
rosa_rugosa	Rorug05G0053800 Rorug05G0053900
rosa_samantha	Rh2DG121400 Rh5AG144300 Rh5BG143000 Rh5BG296500 Rh5CG154800 Rh5DG143300 Rh5DG306000 Rh6AG080900 Rh7AG221200 Rh7DG348200
rosa_wichuraiana	Rw4G019420 Rw5G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	994
AccIII	TCCGGA	1 cut(s)	1159
AciI	CCGC	5 cut(s)	170, 587, 898, 907, 1281
AclI	AACGTT	1 cut(s)	291
AclWI	GGATC	2 cut(s)	760, 773
AcoI	YGGCCR	1 cut(s)	185
AcsI	RAATTY	2 cut(s)	4, 1044
AcuI	CTGAAG	1 cut(s)	464
AcvI	CACGTG	1 cut(s)	250
AfaI	GTAC	1 cut(s)	735
AfiI	CCNNNNNNNGG	3 cut(s)	217, 285, 481
AgsI	TTSAA	9 cut(s)	9, 266, 397, 682, 713, 835, 955, 1022, 1043
AjiI	CACGTC	1 cut(s)	604
AjnI	CCWGG	1 cut(s)	1088
AluBI	AGCT	8 cut(s)	64, 275, 422, 537, 831, 919, 1231, 1256
AluI	AGCT	8 cut(s)	64, 275, 422, 537, 831, 919, 1231, 1256
Alw26I	GTCTC	2 cut(s)	336, 864
AlwI	GGATC	2 cut(s)	760, 773
AlwNI	CAGNNNCTG	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	1111
Aor13HI	TCCGGA	1 cut(s)	1159
AoxI	GGCC	3 cut(s)	185, 191, 466
ApeKI	GCWGC	5 cut(s)	299, 584, 701, 704, 1231
ApoI	RAATTY	2 cut(s)	4, 1044
ArsI	GACNNNNNNTTYG	2 cut(s)	398, 430
Asp700I	GAANNNNTTC	1 cut(s)	735
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	3 cut(s)	466, 860, 1157
AsuC2I	CCSGG	2 cut(s)	1112, 1113
AsuHPI	GGTGA	3 cut(s)	377, 1091, 1196
AvaI	CYCGRG	1 cut(s)	1111
AvaII	GGWCC	2 cut(s)	860, 1157
BamHI	GGATCC	1 cut(s)	765
BanI	GGYRCC	1 cut(s)	994
BbrPI	CACGTG	1 cut(s)	250
BbvI	GCAGC	5 cut(s)	286, 596, 688, 716, 1218
BccI	CCATC	4 cut(s)	137, 278, 836, 959
BciT130I	CCWGG	1 cut(s)	1090
BclI	TGATCA	2 cut(s)	571, 796
BcnI	CCSGG	2 cut(s)	1112, 1113
BcoDI	GTCTC	2 cut(s)	336, 864
BfaI	CTAG	1 cut(s)	459
BfmI	CTRYAG	2 cut(s)	59, 702
BglII	AGATCT	1 cut(s)	640
BisI	GCNGC	5 cut(s)	300, 585, 702, 705, 1232
BlpI	GCTNAGC	1 cut(s)	1199
BlsI	GCNGC	5 cut(s)	301, 586, 703, 706, 1233
BmcAI	AGTACT	1 cut(s)	735
Bme1390I	CCNGG	3 cut(s)	1090, 1112, 1113
Bme18I	GGWCC	2 cut(s)	860, 1157
BmeT110I	CYCGRG	1 cut(s)	1111
BmgBI	CACGTC	1 cut(s)	604
BmgT120I	GGNCC	3 cut(s)	466, 860, 1157
BmiI	GGNNCC	2 cut(s)	767, 996
BmrFI	CCNGG	3 cut(s)	1090, 1112, 1113
BmsI	GCATC	1 cut(s)	336
Bpu10I	CCTNAGC	1 cut(s)	1227
Bpu1102I	GCTNAGC	1 cut(s)	1199
BpuMI	CCSGG	2 cut(s)	1112, 1113
BsaAI	YACGTR	1 cut(s)	250
BsaI	GGTCTC	1 cut(s)	864
BsaJI	CCNNGG	3 cut(s)	188, 863, 1111
BsaWI	WCCGGW	1 cut(s)	1159
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 285, 481
Bse118I	RCCGGY	2 cut(s)	193, 1003
Bse1I	ACTGG	3 cut(s)	97, 384, 1186
BseAI	TCCGGA	1 cut(s)	1159
BseBI	CCWGG	1 cut(s)	1090
BseDI	CCNNGG	3 cut(s)	188, 863, 1111
BseGI	GGATG	1 cut(s)	970
BseLI	CCNNNNNNNGG	3 cut(s)	217, 285, 481
BseMII	CTCAG	1 cut(s)	1213
BseNI	ACTGG	3 cut(s)	97, 384, 1186
BseRI	GAGGAG	3 cut(s)	132, 304, 617
BseXI	GCAGC	5 cut(s)	286, 596, 688, 716, 1218
Bsh1285I	CGRYCG	1 cut(s)	198
BshFI	GGCC	3 cut(s)	187, 193, 468
BshNI	GGYRCC	1 cut(s)	994
BsiEI	CGRYCG	1 cut(s)	198
BsiHKCI	CYCGRG	1 cut(s)	1111
BsiSI	CCGG	5 cut(s)	194, 1004, 1112, 1160, 1211
BslFI	GGGAC	3 cut(s)	39, 188, 683
BslI	CCNNNNNNNGG	3 cut(s)	217, 285, 481
BsmAI	GTCTC	2 cut(s)	336, 864
BsmBI	CGTCTC	1 cut(s)	336
BsmFI	GGGAC	3 cut(s)	39, 188, 683
BsnI	GGCC	3 cut(s)	187, 193, 468
Bso31I	GGTCTC	1 cut(s)	864
BsoBI	CYCGRG	1 cut(s)	1111
Bsp13I	TCCGGA	1 cut(s)	1159
Bsp143I	GATC	4 cut(s)	571, 640, 765, 796
Bsp1720I	GCTNAGC	1 cut(s)	1199
BspACI	CCGC	5 cut(s)	170, 587, 898, 907, 1281
BspANI	GGCC	3 cut(s)	187, 193, 468
BspCNI	CTCAG	1 cut(s)	1212
BspEI	TCCGGA	1 cut(s)	1159
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	2 cut(s)	767, 996
BspMAI	CTGCAG	1 cut(s)	706
BspPI	GGATC	2 cut(s)	760, 773
BspT107I	GGYRCC	1 cut(s)	994
BspTNI	GGTCTC	1 cut(s)	864
BsrFI	RCCGGY	2 cut(s)	193, 1003
BsrI	ACTGG	3 cut(s)	97, 384, 1186
BssAI	RCCGGY	2 cut(s)	193, 1003
BssECI	CCNNGG	3 cut(s)	188, 863, 1111
BssMI	GATC	4 cut(s)	571, 640, 765, 796
BssT1I	CCWWGG	1 cut(s)	863
Bst2UI	CCWGG	1 cut(s)	1090
Bst4CI	ACNGT	2 cut(s)	580, 894
Bst6I	CTCTTC	3 cut(s)	267, 322, 483
BstBAI	YACGTR	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	1254
BstDEI	CTNAG	3 cut(s)	1199, 1227, 1248
BstF5I	GGATG	1 cut(s)	970
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	4 cut(s)	574, 643, 768, 799
BstMAI	GTCTC	2 cut(s)	336, 864
BstMBI	GATC	4 cut(s)	571, 640, 765, 796
BstMCI	CGRYCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	2 cut(s)	380, 1228
BstNI	CCWGG	1 cut(s)	1090
BstSCI	CCNGG	3 cut(s)	1088, 1110, 1111
BstSFI	CTRYAG	2 cut(s)	59, 702
BstV1I	GCAGC	5 cut(s)	286, 596, 688, 716, 1218
BstX2I	RGATCY	2 cut(s)	640, 765
BstXI	CCANNNNNNTGG	1 cut(s)	894
BstYI	RGATCY	2 cut(s)	640, 765
BsuRI	GGCC	3 cut(s)	187, 193, 468
BtrI	CACGTC	1 cut(s)	604
BtsCI	GGATG	1 cut(s)	970
BtsIMutI	CAGTG	3 cut(s)	90, 237, 899
Cac8I	GCNNGC	1 cut(s)	1254
CaiI	CAGNNNCTG	1 cut(s)	67
CciI	TCATGA	1 cut(s)	658
CfoI	GCGC	1 cut(s)	237
Cfr10I	RCCGGY	2 cut(s)	193, 1003
Cfr13I	GGNCC	3 cut(s)	466, 860, 1157
Cfr9I	CCCGGG	1 cut(s)	1111
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	734
CspCI	CAANNNNNGTGG	2 cut(s)	775, 810
CviAII	CATG	7 cut(s)	615, 633, 659, 974, 1027, 1215, 1284
CviQI	GTAC	1 cut(s)	734
DdeI	CTNAG	3 cut(s)	1199, 1227, 1248
DpnI	GATC	4 cut(s)	573, 642, 767, 798
DpnII	GATC	4 cut(s)	571, 640, 765, 796
DraI	TTTAAA	1 cut(s)	1168
EaeI	YGGCCR	1 cut(s)	185
Eam1104I	CTCTTC	3 cut(s)	267, 322, 483
EarI	CTCTTC	3 cut(s)	267, 322, 483
Eco130I	CCWWGG	1 cut(s)	863
Eco31I	GGTCTC	1 cut(s)	864
Eco47I	GGWCC	2 cut(s)	860, 1157
Eco57I	CTGAAG	1 cut(s)	464
Eco72I	CACGTG	1 cut(s)	250
Eco88I	CYCGRG	1 cut(s)	1111
EcoO109I	RGGNCCY	1 cut(s)	860
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	1088
EcoT14I	CCWWGG	1 cut(s)	863
ErhI	CCWWGG	1 cut(s)	863
Esp3I	CGTCTC	1 cut(s)	336
FaeI	CATG	7 cut(s)	618, 636, 662, 977, 1030, 1218, 1287
FalI	AAGNNNNNCTT	2 cut(s)	630, 662
FaqI	GGGAC	3 cut(s)	39, 188, 683
FatI	CATG	7 cut(s)	614, 632, 658, 973, 1026, 1214, 1283
FauI	CCCGC	2 cut(s)	580, 891
FbaI	TGATCA	2 cut(s)	571, 796
Fnu4HI	GCNGC	5 cut(s)	300, 585, 702, 705, 1232
FokI	GGATG	1 cut(s)	977
Fsp4HI	GCNGC	5 cut(s)	300, 585, 702, 705, 1232
FspBI	CTAG	1 cut(s)	459
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	5 cut(s)	300, 585, 702, 705, 1232
HaeIII	GGCC	3 cut(s)	187, 193, 468
HapII	CCGG	5 cut(s)	194, 1004, 1112, 1160, 1211
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	7 cut(s)	618, 636, 662, 977, 1030, 1218, 1287
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HinfI	GANTC	5 cut(s)	515, 749, 782, 848, 1085
HpaII	CCGG	5 cut(s)	194, 1004, 1112, 1160, 1211
HphI	GGTGA	3 cut(s)	377, 1091, 1196
Hpy166II	GTNNAC	1 cut(s)	934
Hpy188I	TCNGA	9 cut(s)	151, 439, 696, 741, 770, 801, 814, 1015, 1050
Hpy188III	TCNNGA	5 cut(s)	659, 758, 878, 955, 1160
Hpy8I	GTNNAC	1 cut(s)	934
HpyAV	CCTTC	6 cut(s)	156, 211, 691, 884, 1016, 1087
HpyCH4III	ACNGT	2 cut(s)	580, 894
HpyCH4IV	ACGT	4 cut(s)	249, 291, 603, 854
HpyCH4V	TGCA	7 cut(s)	15, 70, 253, 391, 493, 704, 977
HpyF10VI	GCNNNNNNNGC	2 cut(s)	380, 1228
HpyF3I	CTNAG	3 cut(s)	1199, 1227, 1248
HpySE526I	ACGT	4 cut(s)	249, 291, 603, 854
Hsp92II	CATG	7 cut(s)	618, 636, 662, 977, 1030, 1218, 1287
HspAI	GCGC	1 cut(s)	235
Kpn2I	TCCGGA	1 cut(s)	1159
Ksp22I	TGATCA	2 cut(s)	571, 796
Kzo9I	GATC	4 cut(s)	571, 640, 765, 796
Lsp1109I	GCAGC	5 cut(s)	286, 596, 688, 716, 1218
LweI	GCATC	1 cut(s)	336
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	4 cut(s)	249, 291, 603, 854
MaeIII	GTNAC	3 cut(s)	245, 365, 1258
MalI	GATC	4 cut(s)	573, 642, 767, 798
MboI	GATC	4 cut(s)	571, 640, 765, 796
MflI	RGATCY	2 cut(s)	640, 765
MluCI	AATT	3 cut(s)	4, 226, 1044
MlyI	GAGTC	2 cut(s)	743, 1094
MmeI	TCCRAC	1 cut(s)	417
MroI	TCCGGA	1 cut(s)	1159
MroXI	GAANNNNTTC	1 cut(s)	735
MseI	TTAA	3 cut(s)	987, 1167, 1241
MslI	CAYNNNNRTG	1 cut(s)	453
MspA1I	CMGCKG	1 cut(s)	587
MspI	CCGG	5 cut(s)	194, 1004, 1112, 1160, 1211
MspR9I	CCNGG	3 cut(s)	1090, 1112, 1113
MvaI	CCWGG	1 cut(s)	1090
MwoI	GCNNNNNNNGC	2 cut(s)	380, 1228
NciI	CCSGG	2 cut(s)	1112, 1113
NdeII	GATC	4 cut(s)	571, 640, 765, 796
NlaIII	CATG	7 cut(s)	618, 636, 662, 977, 1030, 1218, 1287
NlaIV	GGNNCC	2 cut(s)	767, 996
NmeAIII	GCCGAG	1 cut(s)	213
NmuCI	GTSAC	3 cut(s)	245, 365, 1258
PagI	TCATGA	1 cut(s)	658
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	3 cut(s)	515, 782, 848
PfoI	TCCNGGA	1 cut(s)	1088
PkrI	GCNGC	5 cut(s)	301, 586, 703, 706, 1233
PleI	GAGTC	2 cut(s)	743, 1093
PmaCI	CACGTG	1 cut(s)	250
PmlI	CACGTG	1 cut(s)	250
PpsI	GAGTC	2 cut(s)	743, 1093
Ppu21I	YACGTR	1 cut(s)	250
PpuMI	RGGWCCY	1 cut(s)	860
Psp1406I	AACGTT	1 cut(s)	291
Psp5II	RGGWCCY	1 cut(s)	860
Psp6I	CCWGG	1 cut(s)	1088
PspCI	CACGTG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	1088
PspN4I	GGNNCC	2 cut(s)	767, 996
PspPI	GGNCC	3 cut(s)	466, 860, 1157
PspPPI	RGGWCCY	1 cut(s)	860
PstI	CTGCAG	1 cut(s)	706
PstNI	CAGNNNCTG	1 cut(s)	67
PsuI	RGATCY	2 cut(s)	640, 765
RsaI	GTAC	1 cut(s)	735
RsaNI	GTAC	1 cut(s)	734
RseI	CAYNNNNRTG	1 cut(s)	453
SaqAI	TTAA	3 cut(s)	987, 1167, 1241
SatI	GCNGC	5 cut(s)	300, 585, 702, 705, 1232
Sau3AI	GATC	4 cut(s)	571, 640, 765, 796
Sau96I	GGNCC	3 cut(s)	466, 860, 1157
ScaI	AGTACT	1 cut(s)	735
SchI	GAGTC	2 cut(s)	743, 1094
ScrFI	CCNGG	3 cut(s)	1090, 1112, 1113
SfaNI	GCATC	1 cut(s)	336
SfcI	CTRYAG	2 cut(s)	59, 702
SinI	GGWCC	2 cut(s)	860, 1157
SmaI	CCCGGG	1 cut(s)	1113
SmiMI	CAYNNNNRTG	1 cut(s)	453
Sse9I	AATT	3 cut(s)	4, 226, 1044
SsiI	CCGC	5 cut(s)	170, 587, 898, 907, 1281
SspI	AATATT	1 cut(s)	357
SspMI	CTAG	1 cut(s)	459
StyD4I	CCNGG	3 cut(s)	1088, 1110, 1111
StyI	CCWWGG	1 cut(s)	863
TaaI	ACNGT	2 cut(s)	580, 894
TaiI	ACGT	4 cut(s)	252, 294, 606, 857
TaqI	TCGA	3 cut(s)	180, 198, 510
TasI	AATT	3 cut(s)	4, 226, 1044
TatI	WGTACW	1 cut(s)	733
TfiI	GAWTC	3 cut(s)	515, 782, 848
Tru1I	TTAA	3 cut(s)	987, 1167, 1241
Tru9I	TTAA	3 cut(s)	987, 1167, 1241
TscAI	CASTG	3 cut(s)	97, 237, 899
TseFI	GTSAC	3 cut(s)	245, 365, 1258
TseI	GCWGC	5 cut(s)	299, 584, 701, 704, 1231
Tsp45I	GTSAC	3 cut(s)	245, 365, 1258
TspDTI	ATGAA	3 cut(s)	17, 312, 437
TspGWI	ACGGA	1 cut(s)	730
TspMI	CCCGGG	1 cut(s)	1111
TspRI	CASTG	3 cut(s)	97, 237, 899
VpaK11BI	GGWCC	2 cut(s)	860, 1157
XapI	RAATTY	2 cut(s)	4, 1044
XcmI	CCANNNNNNNNNTGG	1 cut(s)	180
XmaI	CCCGGG	1 cut(s)	1111
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	1 cut(s)	459
ZrmI	AGTACT	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.