Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003609

Physical Location & Seq

Genomic Coordinates Reverse (-)

14683747 .. 14688253

Gene Structure 4507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG143300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGAAACGGTCATTTCCTCCCAAAATAAAATTCTCTTCATCACTAAACTCTCCAAAAATGGAGCTCTGTTCCGGCACGGTAGCAGCAGCAACCACTGGCCACTACTTCACTCCTCTCCACTCTCAATCCCACACCCCCAAATCCAAACCCCCCAACTTTGCCATGAACTCCCTCTTCCGATCAACACCCTTCACCAAACGCCTCCCATTTCGTCCCTTACAATCCCACTACTCCACCACCTCCCCCACTAAACCCAAAACCCCAAACACCTACACCATCACCACCCCCCGTTTCACTCCAAAGTCCCCACCCCCCACCAAGCCCAACTTCCCTCGCCCCACTGAAGTCCCCTTCCAGCCCAAAGTCGCCAACTCCGTCCGCCTCATCGGCCACGTCCGTACGCCGCTTCAGGTCCAGACTACCCAAGATGGAGCTTTCTGGGCCTCCACCGTTCTCACCGCGTTTTCTTCTTCTTCTTCTTCGTCCAATTCGCTCCGGATTCCGATTGTTTTCGAGGGGGACTTGGCTCACATTGCGAGTTTACATGTGAAAGACGGTGATTATGTGTTTGTTGCTGGGAATTTGAGGTCGGATTTGAATCATCTTAATGCTAGTGAGGGTCAGGCTCGTTTGCAGGTTAAGGTGCATACACTCAACTTTGTGGAGGAATCTTTTCCAATGAATACAAGATCCAAAGATGGCAGTGAAGAAAGGACCATTGATCACACTGTGGCAAGTGAGAAGGATGATATGAATGAATCACAGAAAGATATCCTAGTGTGGAAAAATATCCTTGTGTGGAAAGATCTCCTTGCCAAGCCTCATGAGTGGTGGGACGTCAGATCGAAAGAGGGTTCCCCAAAGGCTGCAGCCTTTGAGCGTAAGAGTAATGGCGAATTACGTATGATTGATGATTCAACTCCTGAATGGATCCAACATAAGTTAGATTCCTTGACATTTGATCAGAAACCTAATTCACTTAGTTCCGAAACCAGTTTGAGGGAAGATGGGGACTCTACGTTGGGTACTTGGAGAGACCTTCTTGATAATCCAAAACAATGGATGGACTACCGTGACCAAAAACGTAATAAATTGGTAAAGCGAAATCACCCTGATTTCAAGCGTAAGGATGGTGGTCATGCACTCTGGCTTAACAAGGTACCGCAGTGCGTTTTGTCAGAGCTTAAAGGCATGGAGTTTGATGTTCCAATTCTGAAGCCCAAACAAGCAAATGAGGGTAGAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0009295 GO:0009508 GO:0009532 GO:0009536 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

415

Amino Acids

46.9

Weight (kDa)

9.54

Isoelectric Point (pI)

51.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31010 AT4G20010 AT4G20010 AT5G44785 AT5G44785
fragaria_vesca	FvH4_3g12060 FvH4_3g12060 FvH4_3g12060
malus_domestica	MD05G1254900.v1.1 MD10G1235000.v1.1
prunus_persica	Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1
pyrus_communis	pycom05g23290
rosa_chinensis	RchiOBHm_Chr2g0098041 RchiOBHm_Chr5g0019771
rosa_laevigata	RLG00000032467
rosa_multiflora	Rmu_sc0014160.1_g000001 Rmu_sc0039603.1_g000001 Rmu_ssc0000062.1_g000028
rosa_roxburghii	Rroxscaffold_1G00058360
rosa_rugosa	Rorug05G0053800 Rorug05G0053900
rosa_samantha	Rh2DG121400 Rh5AG144300 Rh5BG143000 Rh5BG296500 Rh5CG154800 Rh5DG143300 Rh5DG306000 Rh6AG080900 Rh7AG221200 Rh7DG348200
rosa_wichuraiana	Rw4G019420 Rw5G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	840
Acc36I	ACCTGC	1 cut(s)	625
Acc65I	GGTACC	1 cut(s)	1159
AccB1I	GGYRCC	1 cut(s)	1159
AccII	CGCG	1 cut(s)	461
AccIII	TCCGGA	1 cut(s)	495
AciI	CCGC	4 cut(s)	379, 404, 459, 1163
AclWI	GGATC	3 cut(s)	684, 925, 938
AcoI	YGGCCR	2 cut(s)	97, 388
AcsI	RAATTY	2 cut(s)	29, 580
AcuI	CTGAAG	3 cut(s)	363, 392, 1235
AcyI	GRCGYC	1 cut(s)	837
AdeI	CACNNNGTG	1 cut(s)	730
AfaI	GTAC	3 cut(s)	400, 1027, 1161
AfiI	CCNNNNNNNGG	1 cut(s)	999
AflIII	ACRYGT	1 cut(s)	544
AgsI	TTSAA	3 cut(s)	598, 918, 1120
AjiI	CACGTC	1 cut(s)	394
AjuI	GAANNNNNNNTTGG	4 cut(s)	14, 46, 311, 343
AluBI	AGCT	3 cut(s)	64, 434, 1183
AluI	AGCT	3 cut(s)	64, 434, 1183
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	1 cut(s)	1029
AlwI	GGATC	3 cut(s)	684, 925, 938
Aor13HI	TCCGGA	1 cut(s)	495
AoxI	GGCC	3 cut(s)	97, 388, 441
ApeKI	GCWGC	4 cut(s)	83, 86, 866, 869
ApoI	RAATTY	2 cut(s)	29, 580
Asp700I	GAANNNNTTC	1 cut(s)	672
Asp718I	GGTACC	1 cut(s)	1159
AspS9I	GGNCC	3 cut(s)	412, 441, 714
AsuHPI	GGTGA	5 cut(s)	184, 271, 448, 569, 1100
AvaII	GGWCC	2 cut(s)	412, 714
BaeI	ACNNNNGTAYC	2 cut(s)	1151, 1184
BalI	TGGCCA	1 cut(s)	99
BamHI	GGATCC	1 cut(s)	930
BanI	GGYRCC	1 cut(s)	1159
BanII	GRGCYC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	4 cut(s)	95, 98, 853, 881
BccI	CCATC	6 cut(s)	284, 422, 692, 1001, 1057, 1124
BclI	TGATCA	2 cut(s)	721, 961
BcoDI	GTCTC	1 cut(s)	1029
BfaI	CTAG	2 cut(s)	612, 776
BfmI	CTRYAG	1 cut(s)	867
BfuAI	ACCTGC	1 cut(s)	625
BglI	GCCNNNNNGGC	1 cut(s)	387
BglII	AGATCT	1 cut(s)	805
BisI	GCNGC	5 cut(s)	84, 87, 404, 867, 870
BlsI	GCNGC	5 cut(s)	85, 88, 405, 868, 871
Bme18I	GGWCC	2 cut(s)	412, 714
BmgBI	CACGTC	1 cut(s)	394
BmgT120I	GGNCC	3 cut(s)	412, 441, 714
BmiI	GGNNCC	3 cut(s)	856, 932, 1161
BsaAI	YACGTR	1 cut(s)	902
BsaBI	GATNNNNATC	1 cut(s)	597
BsaHI	GRCGYC	1 cut(s)	837
BsaI	GGTCTC	1 cut(s)	1029
BsaWI	WCCGGW	1 cut(s)	495
Bsc4I	CCNNNNNNNGG	1 cut(s)	999
Bse1I	ACTGG	2 cut(s)	100, 993
Bse3DI	GCAATG	1 cut(s)	531
Bse8I	GATNNNNATC	1 cut(s)	597
BseAI	TCCGGA	1 cut(s)	495
BseGI	GGATG	3 cut(s)	751, 1068, 1135
BseJI	GATNNNNATC	1 cut(s)	597
BseLI	CCNNNNNNNGG	1 cut(s)	999
BseMI	GCAATG	1 cut(s)	531
BseNI	ACTGG	2 cut(s)	100, 993
BseRI	GAGGAG	1 cut(s)	102
BseXI	GCAGC	4 cut(s)	95, 98, 853, 881
BseYI	CCCAGC	1 cut(s)	575
Bsh1236I	CGCG	1 cut(s)	461
BshFI	GGCC	3 cut(s)	99, 390, 443
BshNI	GGYRCC	1 cut(s)	1159
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	2 cut(s)	72, 496
BsiWI	CGTACG	1 cut(s)	398
BslFI	GGGAC	6 cut(s)	198, 289, 332, 533, 848, 1025
BslI	CCNNNNNNNGG	1 cut(s)	999
BsmAI	GTCTC	1 cut(s)	1029
BsmFI	GGGAC	6 cut(s)	198, 289, 332, 533, 848, 1025
BsnI	GGCC	3 cut(s)	99, 390, 443
Bso31I	GGTCTC	1 cut(s)	1029
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp13I	TCCGGA	1 cut(s)	495
Bsp143I	GATC	7 cut(s)	179, 689, 721, 805, 842, 930, 961
BspACI	CCGC	4 cut(s)	379, 404, 459, 1163
BspANI	GGCC	3 cut(s)	99, 390, 443
BspEI	TCCGGA	1 cut(s)	495
BspFNI	CGCG	1 cut(s)	461
BspHI	TCATGA	1 cut(s)	823
BspLI	GGNNCC	3 cut(s)	856, 932, 1161
BspMAI	CTGCAG	1 cut(s)	871
BspMI	ACCTGC	1 cut(s)	625
BspPI	GGATC	3 cut(s)	684, 925, 938
BspT107I	GGYRCC	1 cut(s)	1159
BspTNI	GGTCTC	1 cut(s)	1029
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	2 cut(s)	100, 993
BssMI	GATC	7 cut(s)	179, 689, 721, 805, 842, 930, 961
BssNI	GRCGYC	1 cut(s)	837
Bst4CI	ACNGT	6 cut(s)	9, 79, 451, 557, 730, 1073
Bst6I	CTCTTC	2 cut(s)	40, 179
BstACI	GRCGYC	1 cut(s)	837
BstBAI	YACGTR	1 cut(s)	902
BstDEI	CTNAG	1 cut(s)	980
BstF5I	GGATG	3 cut(s)	751, 1068, 1135
BstFNI	CGCG	1 cut(s)	461
BstKTI	GATC	7 cut(s)	182, 692, 724, 808, 845, 933, 964
BstMAI	GTCTC	1 cut(s)	1029
BstMBI	GATC	7 cut(s)	179, 689, 721, 805, 842, 930, 961
BstMWI	GCNNNNNNNGC	3 cut(s)	387, 440, 533
BstNSI	RCATGY	1 cut(s)	548
BstSFI	CTRYAG	1 cut(s)	867
BstSNI	TACGTA	1 cut(s)	902
BstUI	CGCG	1 cut(s)	461
BstV1I	GCAGC	4 cut(s)	95, 98, 853, 881
BstX2I	RGATCY	3 cut(s)	689, 805, 930
BstXI	CCANNNNNNTGG	1 cut(s)	1059
BstYI	RGATCY	3 cut(s)	689, 805, 930
BsuRI	GGCC	3 cut(s)	99, 390, 443
BtrI	CACGTC	1 cut(s)	394
BtsCI	GGATG	3 cut(s)	751, 1068, 1135
BtsI	GCAGTG	2 cut(s)	709, 1172
BtsIMutI	CAGTG	5 cut(s)	93, 339, 709, 726, 1172
BveI	ACCTGC	1 cut(s)	625
CciI	TCATGA	1 cut(s)	823
Cfr13I	GGNCC	3 cut(s)	412, 441, 714
Csp6I	GTAC	3 cut(s)	399, 1026, 1160
CviAII	CATG	5 cut(s)	163, 545, 824, 1139, 1192
CviQI	GTAC	3 cut(s)	399, 1026, 1160
DdeI	CTNAG	1 cut(s)	980
DpnI	GATC	7 cut(s)	181, 691, 723, 807, 844, 932, 963
DpnII	GATC	7 cut(s)	179, 689, 721, 805, 842, 930, 961
DraIII	CACNNNGTG	1 cut(s)	730
EaeI	YGGCCR	2 cut(s)	97, 388
Eam1104I	CTCTTC	2 cut(s)	40, 179
EarI	CTCTTC	2 cut(s)	40, 179
EciI	GGCGGA	1 cut(s)	368
Ecl136II	GAGCTC	1 cut(s)	64
Eco105I	TACGTA	1 cut(s)	902
Eco24I	GRGCYC	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	1029
Eco32I	GATATC	1 cut(s)	772
Eco47I	GGWCC	2 cut(s)	412, 714
Eco53kI	GAGCTC	1 cut(s)	64
Eco57I	CTGAAG	3 cut(s)	363, 392, 1235
EcoICRI	GAGCTC	1 cut(s)	64
EcoRV	GATATC	1 cut(s)	772
EcoT38I	GRGCYC	1 cut(s)	66
FaeI	CATG	5 cut(s)	166, 548, 827, 1142, 1195
FalI	AAGNNNNNCTT	4 cut(s)	311, 343, 795, 827
FaqI	GGGAC	6 cut(s)	198, 289, 332, 533, 848, 1025
FatI	CATG	5 cut(s)	162, 544, 823, 1138, 1191
FbaI	TGATCA	2 cut(s)	721, 961
Fnu4HI	GCNGC	5 cut(s)	84, 87, 404, 867, 870
FokI	GGATG	3 cut(s)	758, 1075, 1142
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	5 cut(s)	84, 87, 404, 867, 870
FspBI	CTAG	2 cut(s)	612, 776
GluI	GCNGC	5 cut(s)	84, 87, 404, 867, 870
GsaI	CCCAGC	1 cut(s)	579
HaeIII	GGCC	3 cut(s)	99, 390, 443
HapII	CCGG	2 cut(s)	72, 496
Hin1I	GRCGYC	1 cut(s)	837
Hin1II	CATG	5 cut(s)	166, 548, 827, 1142, 1195
HinfI	GANTC	7 cut(s)	499, 598, 668, 758, 914, 947, 1013
HpaII	CCGG	2 cut(s)	72, 496
HphI	GGTGA	5 cut(s)	184, 271, 448, 569, 1100
Hpy166II	GTNNAC	1 cut(s)	542
Hpy188I	TCNGA	8 cut(s)	179, 504, 592, 842, 966, 988, 1180, 1215
Hpy188III	TCNNGA	5 cut(s)	415, 496, 824, 923, 1043
Hpy8I	GTNNAC	1 cut(s)	542
HpyAV	CCTTC	4 cut(s)	199, 361, 736, 1049
HpyCH4III	ACNGT	6 cut(s)	9, 79, 451, 557, 730, 1073
HpyCH4IV	ACGT	5 cut(s)	393, 837, 901, 1019, 1084
HpyCH4V	TGCA	4 cut(s)	634, 646, 869, 1142
HpyF10VI	GCNNNNNNNGC	3 cut(s)	387, 440, 533
HpyF3I	CTNAG	1 cut(s)	980
HpySE526I	ACGT	5 cut(s)	393, 837, 901, 1019, 1084
Hsp92I	GRCGYC	1 cut(s)	837
Hsp92II	CATG	5 cut(s)	166, 548, 827, 1142, 1195
Kpn2I	TCCGGA	1 cut(s)	495
KpnI	GGTACC	1 cut(s)	1163
Ksp22I	TGATCA	2 cut(s)	721, 961
Kzo9I	GATC	7 cut(s)	179, 689, 721, 805, 842, 930, 961
LmnI	GCTCC	3 cut(s)	61, 431, 498
Lsp1109I	GCAGC	4 cut(s)	95, 98, 853, 881
MaeI	CTAG	2 cut(s)	612, 776
MaeII	ACGT	5 cut(s)	393, 837, 901, 1019, 1084
MaeIII	GTNAC	1 cut(s)	1073
MalI	GATC	7 cut(s)	181, 691, 723, 807, 844, 932, 963
MboI	GATC	7 cut(s)	179, 689, 721, 805, 842, 930, 961
MboII	GAAGA	9 cut(s)	27, 166, 459, 462, 465, 468, 471, 719, 1016
MflI	RGATCY	3 cut(s)	689, 805, 930
MhlI	GDGCHC	1 cut(s)	66
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	7 cut(s)	29, 487, 580, 896, 973, 1091, 1209
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	1007
MmeI	TCCRAC	2 cut(s)	570, 958
Mox20I	TGGCCA	1 cut(s)	99
MroI	TCCGGA	1 cut(s)	495
MroXI	GAANNNNTTC	1 cut(s)	672
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	4 cut(s)	606, 639, 1152, 1185
MslI	CAYNNNNRTG	1 cut(s)	606
Msp20I	TGGCCA	1 cut(s)	99
MspI	CCGG	2 cut(s)	72, 496
MvnI	CGCG	1 cut(s)	461
MwoI	GCNNNNNNNGC	3 cut(s)	387, 440, 533
NdeII	GATC	7 cut(s)	179, 689, 721, 805, 842, 930, 961
NlaIII	CATG	5 cut(s)	166, 548, 827, 1142, 1195
NlaIV	GGNNCC	3 cut(s)	856, 932, 1161
NmuCI	GTSAC	1 cut(s)	1073
NspI	RCATGY	1 cut(s)	548
PagI	TCATGA	1 cut(s)	823
PciI	ACATGT	1 cut(s)	544
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PdmI	GAANNNNTTC	1 cut(s)	672
PfeI	GAWTC	6 cut(s)	499, 598, 668, 758, 914, 947
Pfl23II	CGTACG	1 cut(s)	398
PkrI	GCNGC	5 cut(s)	85, 88, 405, 868, 871
PleI	GAGTC	1 cut(s)	1007
PpsI	GAGTC	1 cut(s)	1007
Ppu21I	YACGTR	1 cut(s)	902
PscI	ACATGT	1 cut(s)	544
Psp124BI	GAGCTC	1 cut(s)	66
PspFI	CCCAGC	1 cut(s)	575
PspLI	CGTACG	1 cut(s)	398
PspN4I	GGNNCC	3 cut(s)	856, 932, 1161
PspPI	GGNCC	3 cut(s)	412, 441, 714
PstI	CTGCAG	1 cut(s)	871
PsuI	RGATCY	3 cut(s)	689, 805, 930
RsaI	GTAC	3 cut(s)	400, 1027, 1161
RsaNI	GTAC	3 cut(s)	399, 1026, 1160
RseI	CAYNNNNRTG	1 cut(s)	606
SacI	GAGCTC	1 cut(s)	66
SaqAI	TTAA	4 cut(s)	606, 639, 1152, 1185
SatI	GCNGC	5 cut(s)	84, 87, 404, 867, 870
Sau3AI	GATC	7 cut(s)	179, 689, 721, 805, 842, 930, 961
Sau96I	GGNCC	3 cut(s)	412, 441, 714
SchI	GAGTC	1 cut(s)	1007
SduI	GDGCHC	1 cut(s)	66
SfcI	CTRYAG	1 cut(s)	867
SinI	GGWCC	2 cut(s)	412, 714
SmiMI	CAYNNNNRTG	1 cut(s)	606
SnaBI	TACGTA	1 cut(s)	902
Sse9I	AATT	7 cut(s)	29, 487, 580, 896, 973, 1091, 1209
SsiI	CCGC	4 cut(s)	379, 404, 459, 1163
SspMI	CTAG	2 cut(s)	612, 776
SstI	GAGCTC	1 cut(s)	66
TaaI	ACNGT	6 cut(s)	9, 79, 451, 557, 730, 1073
TaiI	ACGT	5 cut(s)	396, 840, 904, 1022, 1087
TaqI	TCGA	2 cut(s)	513, 845
TasI	AATT	7 cut(s)	29, 487, 580, 896, 973, 1091, 1209
TauI	GCSGC	1 cut(s)	406
TfiI	GAWTC	6 cut(s)	499, 598, 668, 758, 914, 947
Tru1I	TTAA	4 cut(s)	606, 639, 1152, 1185
Tru9I	TTAA	4 cut(s)	606, 639, 1152, 1185
TscAI	CASTG	5 cut(s)	100, 346, 709, 733, 1172
TseFI	GTSAC	1 cut(s)	1073
TseI	GCWGC	4 cut(s)	83, 86, 866, 869
Tsp45I	GTSAC	1 cut(s)	1073
TspDTI	ATGAA	6 cut(s)	17, 27, 179, 695, 767, 771
TspGWI	ACGGA	2 cut(s)	364, 386
TspRI	CASTG	5 cut(s)	100, 346, 709, 733, 1172
VpaK11BI	GGWCC	2 cut(s)	412, 714
XapI	RAATTY	2 cut(s)	29, 580
XceI	RCATGY	1 cut(s)	548
XmnI	GAANNNNTTC	1 cut(s)	672
XspI	CTAG	2 cut(s)	612, 776
ZraI	GACGTC	1 cut(s)	838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.