Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039603.1

Orthogroup ID

OG0003609

Physical Location & Seq

Genomic Coordinates Forward (+)

53 .. 626

Gene Structure 574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039603.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgaactccctcttccgatcaacacccttcaccaaacgcctcccatttcgtcccttacaatcccactactccaccacctcccccactaaacccaaaaccccaaacacctacaccatcaccaccccccgtttcactccaaagtccccaccccccaccaagcccaacttccctcgccccactgaagtccccttccagcccaaagtcgccaactccgtccgcctcatcggccacgtccgtacgccgcttcaggtccagactacccaagatggagctttctgggcctccaccgttctcaccgcgttttcttcttcttcttcttcgtccaattcgctccggattccgattgttttcgagggggacttggctcacattgcgagtttacatgtgaaagacggtgattatgtgtttgttgctgggaatttgaggtcggatttgaatcatcttaatgctagtgagggtcaggctcgtttgcaggtaacttcttgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0009295 GO:0009508 GO:0009532 GO:0009536 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

162

Amino Acids

17.84

Weight (kDa)

10.33

Isoelectric Point (pI)

55.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31010 AT4G20010 AT4G20010 AT5G44785 AT5G44785
fragaria_vesca	FvH4_3g12060 FvH4_3g12060 FvH4_3g12060
malus_domestica	MD05G1254900.v1.1 MD10G1235000.v1.1
prunus_persica	Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1
pyrus_communis	pycom05g23290
rosa_chinensis	RchiOBHm_Chr2g0098041 RchiOBHm_Chr5g0019771
rosa_laevigata	RLG00000032467
rosa_multiflora	Rmu_sc0014160.1_g000001 Rmu_sc0039603.1_g000001 Rmu_ssc0000062.1_g000028
rosa_roxburghii	Rroxscaffold_1G00058360
rosa_rugosa	Rorug05G0053800 Rorug05G0053900
rosa_samantha	Rh2DG121400 Rh5AG144300 Rh5BG143000 Rh5BG296500 Rh5CG154800 Rh5DG143300 Rh5DG306000 Rh6AG080900 Rh7AG221200 Rh7DG348200
rosa_wichuraiana	Rw4G019420 Rw5G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	463
AccII	CGCG	1 cut(s)	299
AccIII	TCCGGA	1 cut(s)	333
AciI	CCGC	3 cut(s)	217, 242, 297
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	1 cut(s)	418
AcuI	CTGAAG	2 cut(s)	201, 230
AfaI	GTAC	1 cut(s)	238
AflIII	ACRYGT	1 cut(s)	382
AgsI	TTSAA	1 cut(s)	436
AjiI	CACGTC	1 cut(s)	232
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AluBI	AGCT	1 cut(s)	272
AluI	AGCT	1 cut(s)	272
Aor13HI	TCCGGA	1 cut(s)	333
AoxI	GGCC	2 cut(s)	226, 279
ApoI	RAATTY	1 cut(s)	418
AspS9I	GGNCC	2 cut(s)	250, 279
AsuHPI	GGTGA	4 cut(s)	22, 109, 286, 407
AvaII	GGWCC	1 cut(s)	250
BccI	CCATC	2 cut(s)	122, 260
BfaI	CTAG	1 cut(s)	450
BfuAI	ACCTGC	1 cut(s)	463
BglI	GCCNNNNNGGC	1 cut(s)	225
BisI	GCNGC	1 cut(s)	242
BlsI	GCNGC	1 cut(s)	243
Bme18I	GGWCC	1 cut(s)	250
BmgBI	CACGTC	1 cut(s)	232
BmgT120I	GGNCC	2 cut(s)	250, 279
BsaBI	GATNNNNATC	1 cut(s)	435
BsaWI	WCCGGW	1 cut(s)	333
Bse3DI	GCAATG	1 cut(s)	369
Bse8I	GATNNNNATC	1 cut(s)	435
BseAI	TCCGGA	1 cut(s)	333
BseJI	GATNNNNATC	1 cut(s)	435
BseMI	GCAATG	1 cut(s)	369
BseYI	CCCAGC	1 cut(s)	413
Bsh1236I	CGCG	1 cut(s)	299
BshFI	GGCC	2 cut(s)	228, 281
BsiSI	CCGG	1 cut(s)	334
BsiWI	CGTACG	1 cut(s)	236
BslFI	GGGAC	4 cut(s)	36, 127, 170, 371
BsmFI	GGGAC	4 cut(s)	36, 127, 170, 371
BsnI	GGCC	2 cut(s)	228, 281
Bsp13I	TCCGGA	1 cut(s)	333
Bsp143I	GATC	1 cut(s)	17
BspACI	CCGC	3 cut(s)	217, 242, 297
BspANI	GGCC	2 cut(s)	228, 281
BspEI	TCCGGA	1 cut(s)	333
BspFNI	CGCG	1 cut(s)	299
BspMI	ACCTGC	1 cut(s)	463
BsrDI	GCAATG	1 cut(s)	369
BssMI	GATC	1 cut(s)	17
Bst4CI	ACNGT	2 cut(s)	289, 395
Bst6I	CTCTTC	1 cut(s)	17
BstFNI	CGCG	1 cut(s)	299
BstKTI	GATC	1 cut(s)	20
BstMBI	GATC	1 cut(s)	17
BstMWI	GCNNNNNNNGC	3 cut(s)	225, 278, 371
BstNSI	RCATGY	1 cut(s)	386
BstUI	CGCG	1 cut(s)	299
BsuRI	GGCC	2 cut(s)	228, 281
BtrI	CACGTC	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	177
BveI	ACCTGC	1 cut(s)	463
Cfr13I	GGNCC	2 cut(s)	250, 279
Csp6I	GTAC	1 cut(s)	237
CviAII	CATG	1 cut(s)	383
CviJI	RGCY	7 cut(s)	160, 196, 228, 272, 281, 365, 464
CviKI_1	RGCY	7 cut(s)	160, 196, 228, 272, 281, 365, 464
CviQI	GTAC	1 cut(s)	237
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
EciI	GGCGGA	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	250
Eco57I	CTGAAG	2 cut(s)	201, 230
FaeI	CATG	1 cut(s)	386
FaiI	YATR	2 cut(s)	384, 402
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FaqI	GGGAC	4 cut(s)	36, 127, 170, 371
FatI	CATG	1 cut(s)	382
Fnu4HI	GCNGC	1 cut(s)	242
Fsp4HI	GCNGC	1 cut(s)	242
FspBI	CTAG	1 cut(s)	450
GluI	GCNGC	1 cut(s)	242
GsaI	CCCAGC	1 cut(s)	417
HaeIII	GGCC	2 cut(s)	228, 281
HapII	CCGG	1 cut(s)	334
Hin1II	CATG	1 cut(s)	386
HinfI	GANTC	2 cut(s)	337, 436
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	4 cut(s)	22, 109, 286, 407
Hpy166II	GTNNAC	1 cut(s)	380
Hpy188I	TCNGA	3 cut(s)	17, 342, 430
Hpy188III	TCNNGA	2 cut(s)	253, 334
Hpy8I	GTNNAC	1 cut(s)	380
HpyAV	CCTTC	2 cut(s)	37, 199
HpyCH4III	ACNGT	2 cut(s)	289, 395
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	1 cut(s)	472
HpyF10VI	GCNNNNNNNGC	3 cut(s)	225, 278, 371
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	386
Kpn2I	TCCGGA	1 cut(s)	333
Kzo9I	GATC	1 cut(s)	17
LmnI	GCTCC	2 cut(s)	269, 336
LpnPI	CCDG	8 cut(s)	206, 233, 262, 266, 347, 399, 446, 458
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	6 cut(s)	4, 297, 300, 303, 306, 309
MluCI	AATT	2 cut(s)	325, 418
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	9 cut(s)	20, 50, 88, 180, 230, 292, 346, 417, 448
MroI	TCCGGA	1 cut(s)	333
MseI	TTAA	1 cut(s)	444
MslI	CAYNNNNRTG	1 cut(s)	444
MspI	CCGG	1 cut(s)	334
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	3 cut(s)	225, 278, 371
NdeII	GATC	1 cut(s)	17
NlaIII	CATG	1 cut(s)	386
NspI	RCATGY	1 cut(s)	386
PciI	ACATGT	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	337, 436
Pfl23II	CGTACG	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	243
PscI	ACATGT	1 cut(s)	382
PspFI	CCCAGC	1 cut(s)	413
PspLI	CGTACG	1 cut(s)	236
PspPI	GGNCC	2 cut(s)	250, 279
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
RseI	CAYNNNNRTG	1 cut(s)	444
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	1 cut(s)	242
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	2 cut(s)	250, 279
SetI	ASST	7 cut(s)	80, 110, 234, 252, 274, 428, 477
SinI	GGWCC	1 cut(s)	250
SmiMI	CAYNNNNRTG	1 cut(s)	444
Sse9I	AATT	2 cut(s)	325, 418
SsiI	CCGC	3 cut(s)	217, 242, 297
SspMI	CTAG	1 cut(s)	450
TaaI	ACNGT	2 cut(s)	289, 395
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	351
TasI	AATT	2 cut(s)	325, 418
TauI	GCSGC	1 cut(s)	244
TfiI	GAWTC	2 cut(s)	337, 436
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	1 cut(s)	184
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	202, 224
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	250
XapI	RAATTY	1 cut(s)	418
XceI	RCATGY	1 cut(s)	386
XspI	CTAG	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.