AT1G31820

amino acid permease family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
11416451 .. 11418464
2014 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G31820.1

Sequence Viewer

Length: 1449 bp
ATGGGAGACTATAACATGAATGAATTTGCTTATGGTAATCTTTACGATGATGATGATGGCGATGTTGGTGGATCGTCTAAAGAAGGAAACAATTCGATTCAGAAAGTTTCAATGTTACCACTCGTTTTCCTCATATTCTACGAAGTCTCAGGAGGTCCTTTCGGTGCTGAAGGTAGTGTGAATGCAGCAGGACCATTGTTAGCTCTTTTAGGGTTTGTGATCTTCCCTTTCATTTGGTGTATCCCTGAGGCACTAATCACTGCGGAGATGAGTACAATGTTTCCAATAAACGGCGGTTTTGTTGTTTGGGTCTCCTCTGCTTTGGGAACCTTTTGGGGGTTTCAAGTAGGTTGGATGAAATGGCTTTGCGGTGTTATTGATAACGCTTTGTATCCTGTTCTTTTCCTCGATTATTTGAAGTCCGCGGTCCCGGCTTTAGCTACTGGTTTGCCAAGAGTTGCATCGATCTTGATCTTGACTCTATTGCTTACTTACTTAAACTATAGAGGACTAACCATTGTTGGTTGGACCGCTGTGTTTATGGGAGTTTTCTCTATGCTTCCGTTTGCTGTAATGAGTCTGGTTTCTATTCCGCAGCTCGAGCCTTCGAGATGGCTTGTGATGGATTTAGGAAATGTCAACTGGAACTTGTATCTCAACACGCTTTTATGGAATCTGAACTACTGGGATTCGGTTAGTACACTGGCCGGTGAAGTGGCAAATCCGAAGAAAACACTTCCTAAGGCTTTGTGTTACGGTGTTATCTTTGTCGCTCTTTCGAACTTCCTCCCTCTTTTGTCTGGAACCGGGGCTATACCGTTGGATCGTGAGTTATGGACAGATGGATATCTAGCTGAGGTTGCTAAAGCCATCGGTGGAGGATGGTTACAATTGTGGGTTCAAGCGGCTGCAGCTACATCAAACATGGGAATGTTTTTAGCCGAAATGAGTAGTGATTCCTTTCAGCTACTTGGAATGGCTGAACTCGGTATACTTCCCGAGATCTTTGCGCAAAGATCTCGCTACGGGACACCTTTACTAGGGATTCTGTTTTCAGCCTCAGGTGTTTTACTCTTGTCAGGATTAAGCTTTCAAGAGATTATAGCTGCAGAGAATTTGCTTTACTGTGGTGGAATGATTTTGGAGTTTATAGCATTTGTTAGACTGAGGAAGAAACATCCGGCTGCATCGAGACCGTATAAGATACCTGTTGGAACCGTTGGTTCGATTCTGATATGTGTCCCTCCGATTGTACTGATATGTTTGGTTATTGTTCTATCTACTATTAAAGTGGCTCTTGTGAGCTTTGTGATGGTGGTCATTGGTTTCTTGATGAAACCTTGTTTAAATCATATGGATGGAAAGAAATGGGTCAAATTCTCAGTCTGTTCTGATTTGGCAGAGTTTCAGAAGGAGAATTTGGATTGTGAAGAGTCTTTGTTACGTTAG

Protein Analysis

482

Amino Acids

52.6

Weight (kDa)

4.91

Isoelectric Point (pI)

31.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 39 - 442 4.9e-41 Amino acid permease
AA_permease PF00324 58 - 426 6.7e-17 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1011
AccI GTMKAC 1 cut(s) 991
AccII CGCG 1 cut(s) 425
AciI CCGC 8 cut(s) 263, 294, 369, 423, 425, 531, 593, 905
AclWI GGATC 2 cut(s) 79, 831
AcoI YGGCCR 1 cut(s) 705
AcsI RAATTY 4 cut(s) 23, 1114, 1376, 1417
AcuI CTGAAG 1 cut(s) 189
AfaI GTAC 3 cut(s) 274, 700, 1254
AfiI CCNNNNNNNGG 3 cut(s) 290, 336, 1040
AgsI TTSAA 5 cut(s) 111, 344, 418, 902, 1094
AjuI GAANNNNNNNTTGG 2 cut(s) 1403, 1435
AluBI AGCT 9 cut(s) 203, 440, 598, 854, 914, 967, 1089, 1106, 1305
AluI AGCT 9 cut(s) 203, 440, 598, 854, 914, 967, 1089, 1106, 1305
Alw26I GTCTC 3 cut(s) 151, 316, 1186
AlwI GGATC 2 cut(s) 79, 831
Ama87I CYCGRG 2 cut(s) 599, 998
AoxI GGCC 1 cut(s) 705
ApeKI GCWGC 6 cut(s) 185, 595, 908, 911, 1106, 1184
ApoI RAATTY 4 cut(s) 23, 1114, 1376, 1417
ArsI GACNNNNNNTTYG 2 cut(s) 1368, 1400
Asp700I GAANNNNTTC 1 cut(s) 91
AspLEI GCGC 1 cut(s) 1012
AspS9I GGNCC 4 cut(s) 155, 191, 427, 528
AsuC2I CCSGG 2 cut(s) 431, 808
AsuHPI GGTGA 1 cut(s) 722
AsuII TTCGAA 1 cut(s) 779
AvaI CYCGRG 2 cut(s) 599, 998
AvaII GGWCC 4 cut(s) 155, 191, 427, 528
AxyI CCTNAGG 3 cut(s) 246, 741, 1060
BbvCI CCTCAGC 1 cut(s) 855
BbvI GCAGC 6 cut(s) 197, 607, 895, 923, 1093, 1171
BccI CCATC 8 cut(s) 50, 606, 616, 836, 876, 878, 1306, 1352
BceAI ACGGC 1 cut(s) 307
BcgI CGANNNNNNTGC 4 cut(s) 989, 1001, 1023, 1035
BciVI GTATCC 2 cut(s) 251, 402
BcnI CCSGG 2 cut(s) 431, 808
BcoDI GTCTC 3 cut(s) 151, 316, 1186
BfaI CTAG 2 cut(s) 851, 1040
BfmI CTRYAG 3 cut(s) 502, 909, 1107
BfuI GTATCC 2 cut(s) 251, 402
BglII AGATCT 2 cut(s) 1002, 1016
BisI GCNGC 7 cut(s) 186, 596, 906, 909, 912, 1107, 1185
BlsI GCNGC 7 cut(s) 187, 597, 907, 910, 913, 1108, 1186
Bme1390I CCNGG 2 cut(s) 431, 808
Bme18I GGWCC 4 cut(s) 155, 191, 427, 528
BmeT110I CYCGRG 2 cut(s) 599, 998
BmgT120I GGNCC 4 cut(s) 155, 191, 427, 528
BmiI GGNNCC 4 cut(s) 328, 429, 805, 1216
BmrFI CCNGG 2 cut(s) 431, 808
BmrI ACTGGG 1 cut(s) 694
BmsI GCATC 2 cut(s) 470, 1196
BmuI ACTGGG 1 cut(s) 694
Bpu10I CCTNAGC 1 cut(s) 855
Bpu14I TTCGAA 1 cut(s) 779
BpuMI CCSGG 2 cut(s) 431, 808
Bsa29I ATCGAT 1 cut(s) 464
BsaBI GATNNNNATC 2 cut(s) 470, 846
BsaI GGTCTC 2 cut(s) 316, 1186
BsaJI CCNNGG 2 cut(s) 423, 807
Bsc4I CCNNNNNNNGG 3 cut(s) 290, 336, 1040
Bse118I RCCGGY 1 cut(s) 707
Bse1I ACTGG 4 cut(s) 448, 647, 689, 708
Bse21I CCTNAGG 3 cut(s) 246, 741, 1060
Bse8I GATNNNNATC 2 cut(s) 470, 846
BseCI ATCGAT 1 cut(s) 464
BseDI CCNNGG 2 cut(s) 423, 807
BseGI GGATG 4 cut(s) 360, 887, 1177, 1363
BseJI GATNNNNATC 2 cut(s) 470, 846
BseLI CCNNNNNNNGG 3 cut(s) 290, 336, 1040
BseMII CTCAG 6 cut(s) 162, 237, 846, 1074, 1157, 1395
BseNI ACTGG 4 cut(s) 448, 647, 689, 708
BseRI GAGGAG 1 cut(s) 304
BseXI GCAGC 6 cut(s) 197, 607, 895, 923, 1093, 1171
Bsh1236I CGCG 1 cut(s) 425
BshFI GGCC 1 cut(s) 707
BshVI ATCGAT 1 cut(s) 464
BsiHKCI CYCGRG 2 cut(s) 599, 998
BsiSI CCGG 4 cut(s) 431, 708, 807, 1181
BslFI GGGAC 3 cut(s) 413, 1042, 1226
BslI CCNNNNNNNGG 3 cut(s) 290, 336, 1040
BsmAI GTCTC 3 cut(s) 151, 316, 1186
BsmFI GGGAC 3 cut(s) 413, 1042, 1226
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 1 cut(s) 707
Bso31I GGTCTC 2 cut(s) 316, 1186
BsoBI CYCGRG 2 cut(s) 599, 998
Bsp119I TTCGAA 1 cut(s) 779
Bsp143I GATC 7 cut(s) 71, 219, 465, 471, 823, 1002, 1016
BspACI CCGC 8 cut(s) 263, 294, 369, 423, 425, 531, 593, 905
BspANI GGCC 1 cut(s) 707
BspCNI CTCAG 6 cut(s) 161, 238, 847, 1073, 1158, 1394
BspDI ATCGAT 1 cut(s) 464
BspFNI CGCG 1 cut(s) 425
BspLI GGNNCC 4 cut(s) 328, 429, 805, 1216
BspMAI CTGCAG 2 cut(s) 913, 1111
BspPI GGATC 2 cut(s) 79, 831
BspT104I TTCGAA 1 cut(s) 779
BspTNI GGTCTC 2 cut(s) 316, 1186
BsrFI RCCGGY 1 cut(s) 707
BsrI ACTGG 4 cut(s) 448, 647, 689, 708
BssAI RCCGGY 1 cut(s) 707
BssECI CCNNGG 2 cut(s) 423, 807
BssMI GATC 7 cut(s) 71, 219, 465, 471, 823, 1002, 1016
BssNAI GTATAC 1 cut(s) 992
Bst1107I GTATAC 1 cut(s) 992
Bst4CI ACNGT 5 cut(s) 758, 819, 1127, 1197, 1219
Bst6I CTCTTC 1 cut(s) 1425
BstBI TTCGAA 1 cut(s) 779
BstDEI CTNAG 7 cut(s) 148, 246, 741, 855, 1060, 1166, 1381
BstDSI CCRYGG 1 cut(s) 423
BstENI CCTNNNNNAGG 1 cut(s) 1038
BstF5I GGATG 4 cut(s) 360, 887, 1177, 1363
BstFNI CGCG 1 cut(s) 425
BstHHI GCGC 1 cut(s) 1012
BstKTI GATC 7 cut(s) 74, 222, 468, 474, 826, 1005, 1019
BstMAI GTCTC 3 cut(s) 151, 316, 1186
BstMBI GATC 7 cut(s) 71, 219, 465, 471, 823, 1002, 1016
BstMWI GCNNNNNNNGC 4 cut(s) 431, 601, 860, 911
BstSCI CCNGG 2 cut(s) 429, 806
BstSFI CTRYAG 3 cut(s) 502, 909, 1107
BstUI CGCG 1 cut(s) 425
BstV1I GCAGC 6 cut(s) 197, 607, 895, 923, 1093, 1171
BstX2I RGATCY 2 cut(s) 1002, 1016
BstYI RGATCY 2 cut(s) 1002, 1016
BstZ17I GTATAC 1 cut(s) 992
Bsu15I ATCGAT 1 cut(s) 464
Bsu36I CCTNAGG 3 cut(s) 246, 741, 1060
BsuI GTATCC 2 cut(s) 251, 402
BsuRI GGCC 1 cut(s) 707
BsuTUI ATCGAT 1 cut(s) 464
BtgI CCRYGG 1 cut(s) 423
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 4 cut(s) 360, 887, 1177, 1363
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 2 cut(s) 258, 701
CfoI GCGC 1 cut(s) 1012
Cfr10I RCCGGY 1 cut(s) 707
Cfr13I GGNCC 4 cut(s) 155, 191, 427, 528
Cfr42I CCGCGG 1 cut(s) 426
ClaI ATCGAT 1 cut(s) 464
Csp6I GTAC 3 cut(s) 273, 699, 1253
CviAII CATG 2 cut(s) 16, 925
CviQI GTAC 3 cut(s) 273, 699, 1253
DdeI CTNAG 7 cut(s) 148, 246, 741, 855, 1060, 1166, 1381
DpnI GATC 7 cut(s) 73, 221, 467, 473, 825, 1004, 1018
DpnII GATC 7 cut(s) 71, 219, 465, 471, 823, 1002, 1016
DraI TTTAAA 1 cut(s) 1347
EaeI YGGCCR 1 cut(s) 705
Eam1104I CTCTTC 1 cut(s) 1425
EarI CTCTTC 1 cut(s) 1425
Eco31I GGTCTC 2 cut(s) 316, 1186
Eco32I GATATC 1 cut(s) 848
Eco47I GGWCC 4 cut(s) 155, 191, 427, 528
Eco57I CTGAAG 1 cut(s) 189
Eco81I CCTNAGG 3 cut(s) 246, 741, 1060
Eco88I CYCGRG 2 cut(s) 599, 998
EcoNI CCTNNNNNAGG 1 cut(s) 1038
EcoO109I RGGNCCY 1 cut(s) 155
EcoRV GATATC 1 cut(s) 848
FaeI CATG 2 cut(s) 19, 928
FalI AAGNNNNNCTT 2 cut(s) 1281, 1313
FaqI GGGAC 3 cut(s) 413, 1042, 1226
FatI CATG 2 cut(s) 15, 924
FauNDI CATATG 1 cut(s) 1353
FblI GTMKAC 1 cut(s) 991
Fnu4HI GCNGC 7 cut(s) 186, 596, 906, 909, 912, 1107, 1185
FokI GGATG 4 cut(s) 367, 894, 1164, 1370
Fsp4HI GCNGC 7 cut(s) 186, 596, 906, 909, 912, 1107, 1185
FspBI CTAG 2 cut(s) 851, 1040
FspI TGCGCA 1 cut(s) 1011
GlaI GCGC 1 cut(s) 1011
GluI GCNGC 7 cut(s) 186, 596, 906, 909, 912, 1107, 1185
HaeIII GGCC 1 cut(s) 707
HapII CCGG 4 cut(s) 431, 708, 807, 1181
HhaI GCGC 1 cut(s) 1012
Hin1II CATG 2 cut(s) 19, 928
Hin6I GCGC 1 cut(s) 1010
HinP1I GCGC 1 cut(s) 1010
HincII GTYRAC 1 cut(s) 640
HindII GTYRAC 1 cut(s) 640
HindIII AAGCTT 1 cut(s) 1087
HinfI GANTC 9 cut(s) 97, 478, 577, 673, 689, 956, 1045, 1228, 1433
HpaII CCGG 4 cut(s) 431, 708, 807, 1181
HphI GGTGA 1 cut(s) 722
Hpy166II GTNNAC 3 cut(s) 640, 701, 992
Hpy188I TCNGA 7 cut(s) 102, 678, 726, 1233, 1248, 1393, 1410
Hpy8I GTNNAC 3 cut(s) 640, 701, 992
HpyAV CCTTC 4 cut(s) 77, 164, 615, 1405
HpyCH4III ACNGT 5 cut(s) 758, 819, 1127, 1197, 1219
HpyCH4IV ACGT 1 cut(s) 1444
HpyCH4V TGCA 5 cut(s) 185, 461, 911, 1109, 1187
HpyF10VI GCNNNNNNNGC 4 cut(s) 431, 601, 860, 911
HpyF3I CTNAG 7 cut(s) 148, 246, 741, 855, 1060, 1166, 1381
HpySE526I ACGT 1 cut(s) 1444
Hsp92II CATG 2 cut(s) 19, 928
HspAI GCGC 1 cut(s) 1010
KspI CCGCGG 1 cut(s) 426
Kzo9I GATC 7 cut(s) 71, 219, 465, 471, 823, 1002, 1016
Lsp1109I GCAGC 6 cut(s) 197, 607, 895, 923, 1093, 1171
LweI GCATC 2 cut(s) 470, 1196
MaeI CTAG 2 cut(s) 851, 1040
MaeII ACGT 1 cut(s) 1444
MaeIII GTNAC 4 cut(s) 114, 752, 885, 1440
MalI GATC 7 cut(s) 73, 221, 467, 473, 825, 1004, 1018
MboI GATC 7 cut(s) 71, 219, 465, 471, 823, 1002, 1016
MboII GAAGA 4 cut(s) 214, 739, 1183, 1442
MfeI CAATTG 1 cut(s) 890
MflI RGATCY 2 cut(s) 1002, 1016
MluCI AATT 6 cut(s) 23, 91, 890, 1114, 1376, 1417
MlyI GAGTC 3 cut(s) 472, 586, 1442
MmeI TCCRAC 4 cut(s) 332, 506, 801, 1192
MroXI GAANNNNTTC 1 cut(s) 91
MseI TTAA 4 cut(s) 497, 1085, 1287, 1346
MslI CAYNNNNRTG 2 cut(s) 929, 1356
MspA1I CMGCKG 2 cut(s) 425, 533
MspI CCGG 4 cut(s) 431, 708, 807, 1181
MspR9I CCNGG 2 cut(s) 431, 808
MunI CAATTG 1 cut(s) 890
Mva1269I GAATGC 1 cut(s) 187
MvnI CGCG 1 cut(s) 425
MwoI GCNNNNNNNGC 4 cut(s) 431, 601, 860, 911
NciI CCSGG 2 cut(s) 431, 808
NdeI CATATG 1 cut(s) 1353
NdeII GATC 7 cut(s) 71, 219, 465, 471, 823, 1002, 1016
NlaIII CATG 2 cut(s) 19, 928
NlaIV GGNNCC 4 cut(s) 328, 429, 805, 1216
NsbI TGCGCA 1 cut(s) 1011
NspV TTCGAA 1 cut(s) 779
PaeR7I CTCGAG 1 cut(s) 599
PctI GAATGC 1 cut(s) 187
PdmI GAANNNNTTC 1 cut(s) 91
PfeI GAWTC 6 cut(s) 97, 673, 689, 956, 1045, 1228
PkrI GCNGC 7 cut(s) 187, 597, 907, 910, 913, 1108, 1186
PleI GAGTC 3 cut(s) 472, 585, 1441
PpsI GAGTC 3 cut(s) 472, 585, 1441
PpuMI RGGWCCY 1 cut(s) 155
Psp5II RGGWCCY 1 cut(s) 155
PspN4I GGNNCC 4 cut(s) 328, 429, 805, 1216
PspPI GGNCC 4 cut(s) 155, 191, 427, 528
PspPPI RGGWCCY 1 cut(s) 155
PspXI VCTCGAGB 1 cut(s) 599
PsrI GAACNNNNNNTAC 2 cut(s) 975, 1007
PstI CTGCAG 2 cut(s) 913, 1111
PsuI RGATCY 2 cut(s) 1002, 1016
RsaI GTAC 3 cut(s) 274, 700, 1254
RsaNI GTAC 3 cut(s) 273, 699, 1253
RseI CAYNNNNRTG 2 cut(s) 929, 1356
SacII CCGCGG 1 cut(s) 426
SaqAI TTAA 4 cut(s) 497, 1085, 1287, 1346
SatI GCNGC 7 cut(s) 186, 596, 906, 909, 912, 1107, 1185
Sau3AI GATC 7 cut(s) 71, 219, 465, 471, 823, 1002, 1016
Sau96I GGNCC 4 cut(s) 155, 191, 427, 528
SchI GAGTC 3 cut(s) 472, 586, 1442
ScrFI CCNGG 2 cut(s) 431, 808
SfaNI GCATC 2 cut(s) 470, 1196
SfcI CTRYAG 3 cut(s) 502, 909, 1107
Sfr274I CTCGAG 1 cut(s) 599
Sfr303I CCGCGG 1 cut(s) 426
SfuI TTCGAA 1 cut(s) 779
SgrBI CCGCGG 1 cut(s) 426
SinI GGWCC 4 cut(s) 155, 191, 427, 528
SlaI CTCGAG 1 cut(s) 599
SmiMI CAYNNNNRTG 2 cut(s) 929, 1356
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
Sse9I AATT 6 cut(s) 23, 91, 890, 1114, 1376, 1417
SsiI CCGC 8 cut(s) 263, 294, 369, 423, 425, 531, 593, 905
SspMI CTAG 2 cut(s) 851, 1040
StyD4I CCNGG 2 cut(s) 429, 806
TaaI ACNGT 5 cut(s) 758, 819, 1127, 1197, 1219
TaiI ACGT 1 cut(s) 1447
TaqI TCGA 8 cut(s) 95, 408, 464, 600, 608, 779, 1190, 1226
TasI AATT 6 cut(s) 23, 91, 890, 1114, 1376, 1417
TatI WGTACW 3 cut(s) 272, 698, 1252
TauI GCSGC 1 cut(s) 908
TfiI GAWTC 6 cut(s) 97, 673, 689, 956, 1045, 1228
Tru1I TTAA 4 cut(s) 497, 1085, 1287, 1346
Tru9I TTAA 4 cut(s) 497, 1085, 1287, 1346
TscAI CASTG 2 cut(s) 265, 708
TseI GCWGC 6 cut(s) 185, 595, 908, 911, 1106, 1184
TspDTI ATGAA 5 cut(s) 32, 36, 220, 371, 1349
TspGWI ACGGA 1 cut(s) 552
TspRI CASTG 2 cut(s) 265, 708
VpaK11BI GGWCC 4 cut(s) 155, 191, 427, 528
XagI CCTNNNNNAGG 1 cut(s) 1038
XapI RAATTY 4 cut(s) 23, 1114, 1376, 1417
XhoI CTCGAG 1 cut(s) 599
XmiI GTMKAC 1 cut(s) 991
XmnI GAANNNNTTC 1 cut(s) 91
XspI CTAG 2 cut(s) 851, 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.