Rw6G020080

polyamine transporter At1g31830 isoform X1

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
40143738 .. 40146318
2581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G020080.1

Sequence Viewer

Length: 1437 bp
ATGAAACATAGAACCTCACCTGCAAGAGAAAGTAGTGCGAAAATGTTGGACAACAATATTGGCGGGTATGTTGGTATGGGGGAAGGATCCTCTCACAACTTACACAAGTACAATAAGGTTTCAATTGTACCTCTTGTATTCTTGATCTTCTATGAGGTCTCTGGGGGGCCATTTGGCGTCGAAGACAGTGTCCAGGCAGCCGGTCCCCTGTTAGCCCTTCTCGGTTTTCTGGTTTTTGCAATCATATGGAGTGTTCCGGAGGCCTTGATAACTGCAGAAATGGGCACTATGTTCCCTGAAAATGGGGGATATGTTGTTTGGGTTTCATCGGCTTTGGGTCCATTTTGGGGATTTCAGCAAGGTTGGGTGAAATGGCTTAGTGGGGTGATTGATAATGCTCTGTATCCTGTTCTATTTCTGGACTATCTGAAGTCAGCAATTCCAGCTTTAGAAAGTGGTTTGCCAAGGACAATTGCAGTGTTGGCTTTGACTGCAATTCTCACTTATCTGAACTATAGGGGTTTAACCATAGTGGGCTGGGTAGCTATTTTACTAGGAGTGTTTTCACTTCTTCCTTTTATAGTCATGGGGCTGATAGCAATTCCCAAGATAGAGCCTTCGAGGTGGCTTATCGTAGATGTGGGCACTGTTAATTGGAGTTTGTACTTGAACACGCTTTTCTGGAATCTTAATTACTGGGATTCAATCAGTACTCTTTCAGGGGAAGTGGAAAACCCTAGTAAAACTCTTCCAAAAGCTCTGTTTTATGCTCTAATCATGGTTGTTCTCGGATACATTTTCCCTCTTCTGACTGGTACTGGAGCTATTCCAGTTGATCGTGCAGTGTGGTCCGATGGCTATTTTGCTGATATTGCTAAAATGCTGGGAGGCTCATGGTTAAGAACCTGGGTTCTAGCGGCAGCTGCTTTGTCAAACATGGGTATGTTTGTGGCTGAAATGAGCAGCGACTCATTTCAACTTCTGGGTATGGCAGAAATTGGGATGCTTCCTGCATTCTTTGCCAAACGATCTCATTATGGTACCCCACTTACGGGAATCTTGTTCTCTGCTTCTGGTGTAATTCTGCTCTCGTGGTTGAGTTTCCAAGAGATTGTAGCGGCAGAGAACTACTTGTACTGTTTTGGGATGATTATGGAATTCATAGCATTCGTGAAGTTAAGAATTCAGCACCCAAATCTACCACGGCCTTACAAGATCCCTTTTGGGACTATTGGAGCTATTTTGATGTGTATTCCTCCCACAGTGTTGATTTTTGTAGTTATAGCTCTTGCTTCTCTCAAGATCATGGCTATAAGCGTTGCTGCTGTGATAGTCGGGTTTGTTTTGCAGCCTTGTGTTGAGTACATTAAAAAGAAGAGATGGTATGATTTCTCCAGGAATTCTGACCTTCCAGATTTCCAATATGCATCAGTGTAA

Protein Analysis

478

Amino Acids

52.57

Weight (kDa)

6.53

Isoelectric Point (pI)

37.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 46 - 435 1.7e-41 Amino acid permease
AA_permease PF00324 63 - 439 1.1e-20 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 28
Acc36I ACCTGC 1 cut(s) 28
Acc65I GGTACC 1 cut(s) 1040
AccB1I GGYRCC 1 cut(s) 1040
AccIII TCCGGA 1 cut(s) 256
AciI CCGC 3 cut(s) 63, 917, 1118
AclWI GGATC 3 cut(s) 81, 94, 1210
AcsI RAATTY 3 cut(s) 1157, 1182, 1399
AcuI CTGAAG 1 cut(s) 449
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 8 cut(s) 110, 129, 665, 712, 817, 1042, 1136, 1364
AfiI CCNNNNNNNGG 4 cut(s) 302, 347, 1051, 1052
AgsI TTSAA 4 cut(s) 123, 670, 705, 977
AjnI CCWGG 3 cut(s) 192, 905, 1394
AluBI AGCT 7 cut(s) 446, 545, 758, 824, 923, 1238, 1286
AluI AGCT 7 cut(s) 446, 545, 758, 824, 923, 1238, 1286
Alw26I GTCTC 1 cut(s) 163
AlwI GGATC 3 cut(s) 81, 94, 1210
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 3 cut(s) 167, 261, 1205
ApeKI GCWGC 6 cut(s) 197, 920, 923, 963, 1322, 1348
ApoI RAATTY 3 cut(s) 1157, 1182, 1399
ArsI GACNNNNNNTTYG 2 cut(s) 174, 206
Asp718I GGTACC 1 cut(s) 1040
AspS9I GGNCC 4 cut(s) 167, 203, 338, 849
AsuHPI GGTGA 3 cut(s) 9, 379, 397
AvaII GGWCC 3 cut(s) 203, 338, 849
BaeGI GKGCMC 2 cut(s) 287, 647
BamHI GGATCC 1 cut(s) 86
BanI GGYRCC 1 cut(s) 1040
BauI CACGAG 1 cut(s) 1090
BbsI GAAGAC 1 cut(s) 189
BbvI GCAGC 6 cut(s) 209, 910, 932, 975, 1309, 1360
BccI CCATC 2 cut(s) 848, 1374
BceAI ACGGC 1 cut(s) 1220
BciT130I CCWGG 3 cut(s) 194, 907, 1396
BciVI GTATCC 2 cut(s) 414, 785
BcoDI GTCTC 1 cut(s) 163
BfaI CTAG 3 cut(s) 554, 738, 914
BfmI CTRYAG 2 cut(s) 273, 514
BfuAI ACCTGC 1 cut(s) 28
BfuI GTATCC 2 cut(s) 414, 785
BisI GCNGC 8 cut(s) 198, 918, 921, 924, 964, 1119, 1323, 1349
BlsI GCNGC 8 cut(s) 199, 919, 922, 925, 965, 1120, 1324, 1350
BmcAI AGTACT 1 cut(s) 712
Bme1390I CCNGG 3 cut(s) 194, 907, 1396
Bme18I GGWCC 3 cut(s) 203, 338, 849
BmgT120I GGNCC 4 cut(s) 167, 203, 338, 849
BmiI GGNNCC 5 cut(s) 88, 168, 205, 339, 1042
BmrFI CCNGG 3 cut(s) 194, 907, 1396
BmrI ACTGGG 1 cut(s) 706
BmsI GCATC 1 cut(s) 993
BmuI ACTGGG 1 cut(s) 706
BpiI GAAGAC 1 cut(s) 189
BpmI CTGGAG 2 cut(s) 840, 1378
BpuEI CTTGAG 1 cut(s) 1283
BsaHI GRCGYC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 163
BsaJI CCNNGG 3 cut(s) 464, 906, 1202
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 4 cut(s) 302, 347, 1051, 1052
Bse118I RCCGGY 1 cut(s) 200
Bse1I ACTGG 4 cut(s) 701, 817, 823, 830
BseAI TCCGGA 1 cut(s) 256
BseBI CCWGG 3 cut(s) 194, 907, 1396
BseDI CCNNGG 3 cut(s) 464, 906, 1202
BseGI GGATG 2 cut(s) 1008, 1152
BseLI CCNNNNNNNGG 4 cut(s) 302, 347, 1051, 1052
BseNI ACTGG 4 cut(s) 701, 817, 823, 830
BseSI GKGCMC 2 cut(s) 287, 647
BseXI GCAGC 6 cut(s) 209, 910, 932, 975, 1309, 1360
BseYI CCCAGC 2 cut(s) 537, 883
BsgI GTGCAG 1 cut(s) 861
BshFI GGCC 3 cut(s) 169, 263, 1207
BshNI GGYRCC 1 cut(s) 1040
BsiSI CCGG 2 cut(s) 201, 257
BslFI GGGAC 2 cut(s) 189, 1240
BslI CCNNNNNNNGG 4 cut(s) 302, 347, 1051, 1052
BsmAI GTCTC 1 cut(s) 163
BsmFI GGGAC 2 cut(s) 189, 1240
BsmI GAATGC 2 cut(s) 1013, 1166
BsnI GGCC 3 cut(s) 169, 263, 1207
Bso31I GGTCTC 1 cut(s) 163
Bsp1286I GDGCHC 2 cut(s) 287, 647
Bsp13I TCCGGA 1 cut(s) 256
Bsp143I GATC 6 cut(s) 86, 144, 835, 1028, 1215, 1302
BspACI CCGC 3 cut(s) 63, 917, 1118
BspANI GGCC 3 cut(s) 169, 263, 1207
BspEI TCCGGA 1 cut(s) 256
BspLI GGNNCC 5 cut(s) 88, 168, 205, 339, 1042
BspMAI CTGCAG 1 cut(s) 277
BspMI ACCTGC 1 cut(s) 28
BspPI GGATC 3 cut(s) 81, 94, 1210
BspT107I GGYRCC 1 cut(s) 1040
BspTNI GGTCTC 1 cut(s) 163
BsrFI RCCGGY 1 cut(s) 200
BsrI ACTGG 4 cut(s) 701, 817, 823, 830
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 3 cut(s) 464, 906, 1202
BssMI GATC 6 cut(s) 86, 144, 835, 1028, 1215, 1302
BssNI GRCGYC 1 cut(s) 177
BssSI CACGAG 1 cut(s) 1090
BssT1I CCWWGG 1 cut(s) 464
Bst2BI CACGAG 1 cut(s) 1090
Bst2UI CCWGG 3 cut(s) 194, 907, 1396
Bst4CI ACNGT 4 cut(s) 188, 649, 1139, 1264
Bst6I CTCTTC 3 cut(s) 753, 810, 1370
BstACI GRCGYC 1 cut(s) 177
BstAPI GCANNNNNTGC 1 cut(s) 1019
BstDEI CTNAG 1 cut(s) 377
BstDSI CCRYGG 1 cut(s) 1202
BstF5I GGATG 2 cut(s) 1008, 1152
BstKTI GATC 6 cut(s) 89, 147, 838, 1031, 1218, 1305
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 6 cut(s) 86, 144, 835, 1028, 1215, 1302
BstMWI GCNNNNNNNGC 6 cut(s) 443, 482, 491, 872, 923, 1019
BstNI CCWGG 3 cut(s) 194, 907, 1396
BstSCI CCNGG 3 cut(s) 192, 905, 1394
BstSFI CTRYAG 2 cut(s) 273, 514
BstSLI GKGCMC 2 cut(s) 287, 647
BstV1I GCAGC 6 cut(s) 209, 910, 932, 975, 1309, 1360
BstV2I GAAGAC 1 cut(s) 189
BstX2I RGATCY 2 cut(s) 86, 1215
BstYI RGATCY 2 cut(s) 86, 1215
BsuI GTATCC 2 cut(s) 414, 785
BsuRI GGCC 3 cut(s) 169, 263, 1207
BtgI CCRYGG 1 cut(s) 1202
BtsCI GGATG 2 cut(s) 1008, 1152
BtsI GCAGTG 2 cut(s) 483, 849
BtsIMutI CAGTG 6 cut(s) 193, 483, 645, 849, 1269, 1437
BveI ACCTGC 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 4 cut(s) 167, 203, 338, 849
CseI GACGC 1 cut(s) 166
Csp6I GTAC 8 cut(s) 109, 128, 664, 711, 816, 1041, 1135, 1363
CviAII CATG 5 cut(s) 586, 778, 894, 937, 1306
CviQI GTAC 8 cut(s) 109, 128, 664, 711, 816, 1041, 1135, 1363
DdeI CTNAG 1 cut(s) 377
DpnI GATC 6 cut(s) 88, 146, 837, 1030, 1217, 1304
DpnII GATC 6 cut(s) 86, 144, 835, 1028, 1215, 1302
Eam1104I CTCTTC 3 cut(s) 753, 810, 1370
EarI CTCTTC 3 cut(s) 753, 810, 1370
Eco130I CCWWGG 1 cut(s) 464
Eco147I AGGCCT 1 cut(s) 263
Eco31I GGTCTC 1 cut(s) 163
Eco47I GGWCC 3 cut(s) 203, 338, 849
Eco57I CTGAAG 1 cut(s) 449
EcoRI GAATTC 3 cut(s) 1157, 1182, 1399
EcoRII CCWGG 3 cut(s) 192, 905, 1394
EcoT14I CCWWGG 1 cut(s) 464
EcoT22I ATGCAT 1 cut(s) 1429
ErhI CCWWGG 1 cut(s) 464
FaeI CATG 5 cut(s) 589, 781, 897, 940, 1309
FaqI GGGAC 2 cut(s) 189, 1240
FatI CATG 5 cut(s) 585, 777, 893, 936, 1305
FauI CCCGC 1 cut(s) 56
FauNDI CATATG 1 cut(s) 245
Fnu4HI GCNGC 8 cut(s) 198, 918, 921, 924, 964, 1119, 1323, 1349
FokI GGATG 2 cut(s) 1015, 1159
Fsp4HI GCNGC 8 cut(s) 198, 918, 921, 924, 964, 1119, 1323, 1349
FspBI CTAG 3 cut(s) 554, 738, 914
GluI GCNGC 8 cut(s) 198, 918, 921, 924, 964, 1119, 1323, 1349
GsaI CCCAGC 2 cut(s) 541, 887
GsuI CTGGAG 2 cut(s) 840, 1378
HaeIII GGCC 3 cut(s) 169, 263, 1207
HapII CCGG 2 cut(s) 201, 257
HgaI GACGC 1 cut(s) 166
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 5 cut(s) 589, 781, 897, 940, 1309
HinfI GANTC 4 cut(s) 685, 701, 968, 1056
HpaII CCGG 2 cut(s) 201, 257
HphI GGTGA 3 cut(s) 9, 379, 397
Hpy188I TCNGA 6 cut(s) 429, 510, 791, 810, 853, 1405
Hpy188III TCNNGA 7 cut(s) 142, 257, 419, 682, 1171, 1300, 1412
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 4 cut(s) 77, 227, 627, 1418
HpyCH4III ACNGT 4 cut(s) 188, 649, 1139, 1264
HpyCH4V TGCA 9 cut(s) 23, 239, 275, 476, 494, 842, 1013, 1348, 1427
HpyF10VI GCNNNNNNNGC 6 cut(s) 443, 482, 491, 872, 923, 1019
HpyF3I CTNAG 1 cut(s) 377
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 5 cut(s) 589, 781, 897, 940, 1309
Kpn2I TCCGGA 1 cut(s) 256
KpnI GGTACC 1 cut(s) 1044
Kzo9I GATC 6 cut(s) 86, 144, 835, 1028, 1215, 1302
LmnI GCTCC 2 cut(s) 821, 1235
Lsp1109I GCAGC 6 cut(s) 209, 910, 932, 975, 1309, 1360
LweI GCATC 1 cut(s) 993
MaeI CTAG 3 cut(s) 554, 738, 914
MalI GATC 6 cut(s) 88, 146, 837, 1030, 1217, 1304
MboI GATC 6 cut(s) 86, 144, 835, 1028, 1215, 1302
MboII GAAGA 6 cut(s) 139, 194, 563, 740, 797, 1387
MfeI CAATTG 2 cut(s) 123, 471
MflI RGATCY 2 cut(s) 86, 1215
MhlI GDGCHC 2 cut(s) 287, 647
MlyI GAGTC 1 cut(s) 962
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 9 cut(s) 25, 100, 141, 148, 253, 615, 813, 881, 1266
Mph1103I ATGCAT 1 cut(s) 1429
MroI TCCGGA 1 cut(s) 256
MseI TTAA 6 cut(s) 524, 651, 690, 899, 1178, 1368
MslI CAYNNNNRTG 1 cut(s) 941
MspA1I CMGCKG 1 cut(s) 923
MspI CCGG 2 cut(s) 201, 257
MspR9I CCNGG 3 cut(s) 194, 907, 1396
MunI CAATTG 2 cut(s) 123, 471
Mva1269I GAATGC 2 cut(s) 1013, 1166
MvaI CCWGG 3 cut(s) 194, 907, 1396
MwoI GCNNNNNNNGC 6 cut(s) 443, 482, 491, 872, 923, 1019
NdeI CATATG 1 cut(s) 245
NdeII GATC 6 cut(s) 86, 144, 835, 1028, 1215, 1302
NlaIII CATG 5 cut(s) 589, 781, 897, 940, 1309
NlaIV GGNNCC 5 cut(s) 88, 168, 205, 339, 1042
NsiI ATGCAT 1 cut(s) 1429
PaqCI CACCTGC 1 cut(s) 28
PceI AGGCCT 1 cut(s) 263
PctI GAATGC 2 cut(s) 1013, 1166
PfeI GAWTC 3 cut(s) 685, 701, 1056
PflFI GACNNNGTC 1 cut(s) 188
PfoI TCCNGGA 1 cut(s) 1394
PkrI GCNGC 8 cut(s) 199, 919, 922, 925, 965, 1120, 1324, 1350
PleI GAGTC 1 cut(s) 962
PpsI GAGTC 1 cut(s) 962
Psp6I CCWGG 3 cut(s) 192, 905, 1394
PspFI CCCAGC 2 cut(s) 537, 883
PspGI CCWGG 3 cut(s) 192, 905, 1394
PspN4I GGNNCC 5 cut(s) 88, 168, 205, 339, 1042
PspPI GGNCC 4 cut(s) 167, 203, 338, 849
PsrI GAACNNNNNNTAC 2 cut(s) 1118, 1150
PstI CTGCAG 1 cut(s) 277
PsuI RGATCY 2 cut(s) 86, 1215
PsyI GACNNNGTC 1 cut(s) 188
PvuII CAGCTG 1 cut(s) 923
RsaI GTAC 8 cut(s) 110, 129, 665, 712, 817, 1042, 1136, 1364
RsaNI GTAC 8 cut(s) 109, 128, 664, 711, 816, 1041, 1135, 1363
RseI CAYNNNNRTG 1 cut(s) 941
SaqAI TTAA 6 cut(s) 524, 651, 690, 899, 1178, 1368
SatI GCNGC 8 cut(s) 198, 918, 921, 924, 964, 1119, 1323, 1349
Sau3AI GATC 6 cut(s) 86, 144, 835, 1028, 1215, 1302
Sau96I GGNCC 4 cut(s) 167, 203, 338, 849
ScaI AGTACT 1 cut(s) 712
SchI GAGTC 1 cut(s) 962
ScrFI CCNGG 3 cut(s) 194, 907, 1396
SduI GDGCHC 2 cut(s) 287, 647
SfaNI GCATC 1 cut(s) 993
SfcI CTRYAG 2 cut(s) 273, 514
SinI GGWCC 3 cut(s) 203, 338, 849
SmiMI CAYNNNNRTG 1 cut(s) 941
SmlI CTYRAG 1 cut(s) 1298
SmoI CTYRAG 1 cut(s) 1298
SseBI AGGCCT 1 cut(s) 263
SsiI CCGC 3 cut(s) 63, 917, 1118
SspI AATATT 1 cut(s) 58
SspMI CTAG 3 cut(s) 554, 738, 914
StuI AGGCCT 1 cut(s) 263
StyD4I CCNGG 3 cut(s) 192, 905, 1394
StyI CCWWGG 1 cut(s) 464
TaaI ACNGT 4 cut(s) 188, 649, 1139, 1264
TaqI TCGA 2 cut(s) 180, 620
TatI WGTACW 5 cut(s) 108, 663, 710, 1134, 1362
TauI GCSGC 2 cut(s) 920, 1121
TfiI GAWTC 3 cut(s) 685, 701, 1056
Tru1I TTAA 6 cut(s) 524, 651, 690, 899, 1178, 1368
Tru9I TTAA 6 cut(s) 524, 651, 690, 899, 1178, 1368
TscAI CASTG 6 cut(s) 193, 483, 652, 849, 1269, 1437
TseI GCWGC 6 cut(s) 197, 920, 923, 963, 1322, 1348
TspDTI ATGAA 3 cut(s) 17, 315, 1150
TspRI CASTG 6 cut(s) 193, 483, 652, 849, 1269, 1437
Tth111I GACNNNGTC 1 cut(s) 188
VpaK11BI GGWCC 3 cut(s) 203, 338, 849
XapI RAATTY 3 cut(s) 1157, 1182, 1399
XspI CTAG 3 cut(s) 554, 738, 914
ZrmI AGTACT 1 cut(s) 712
Zsp2I ATGCAT 1 cut(s) 1429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.