Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001720

Physical Location & Seq

Genomic Coordinates Reverse (-)

11265571 .. 11268889

Gene Structure 3319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0142800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGAGAAATCTCTGGTGACGCTCGATAAAGGCACCACCTGCTCCTCTTGGAACTACTCCGGCCAGAGATTAGCCACCGGCTCCCTCGACGGAACTCTCACCATCTTCGACTCGCGCCACCCGTCTTCTTCCTCTTTCTCCTCCACCTCAAAATCCAAGGTGCACCACGCTTCTGCCATTGTCAAAGTTGTCTGGGTTCCTCCGGAGTTCGGTCACGCAGTGGCGTGTGTTTGCGGAGATGGAACGTTGTCGTTGTGGGAAGAGATTGTTGAAGATGCACAACCTCTTCAATGGAAGCTGTGCAAAAGCTTTAGAAGTGATTCACCTCAGCTGCTAGATGTTCAATTTGGGGGTTCATCGTCAAGTTTGAAAATGGTTGCTGCATATTCAGACGGCAACGTCAAGCTCTATGAGCTACTTGATCCATTGGAATTGAAAAACTGGCAGCTTCAGGCGGAAATTCAGAATGTTATTGATTCAGTGTCTACACTTGGGAAAGCTGTGTGCTTATCCGCATCTATATCATGGAATCCAAGAGGAGAAGAAAGCCAGGAATCAAGTTTTGTTTTGGGTTTCATTTCAGACACTCTACAACTTAATTCATCCAAGGTATGGGAATTTGATCAAGCTCATCAAAGATGGCTCCCAGTTGCAGAGTTGGCTTCTCCTAATGACAAGGGTGATCAGGTCCATGCAGTTGCCTGGGCACCAAACATTGGCAGGCCCTATGAGGTAATTGCTGTTGCCACTCAGAAGGGAATATCAATATGGCATCTTGGATTAAACCCTGACTCAGATGGAAGGCTCTTTTCAGAGAAGGTTGCGCAACTTTCTGGTCACAAAGGCGAGGTCTGGCAACTGGAGTGGGACATGAGTGGAATGACATTGGCATCCACTGGGAACGATGGGGTAGTACGGTTGTGGCAGTCTAATTTGAATGGCATTTGGCATGAAGAAGCTACATTGGAACCCACTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006082 GO:0006520 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0006928 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015171 GO:0015179 GO:0015203 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015846 GO:0015849 GO:0016020 GO:0016021 GO:0016043 GO:0016477 GO:0019752 GO:0022607 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048870 GO:0050900 GO:0051179 GO:0051234 GO:0051674 GO:0055085 GO:0065003 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0098656 GO:1901564 GO:1902047 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

326

Amino Acids

35.7

Weight (kDa)

5.03

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	15 - 87	8.6e-08	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	201 - 309	5e-07	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	228 - 310	7.2e-07	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	228 - 311	1e-06	CDC20/Fizzy WD40 domain
WD40	PF00400	272 - 308	3.7e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31820 AT1G31830 AT1G31830 AT5G05630
fragaria_vesca	FvH4_2g15680 FvH4_2g15680 FvH4_4g35270 FvH4_5g24050 FvH4_5g24050
malus_domestica	MD06G1016700.v1.1 MD17G1241900.v1.1
prunus_persica	Prupe.5G019700_v2.0.a1 Prupe.8G169300_v2.0.a1 Prupe.8G169300_v2.0.a1 Prupe.8G169300_v2.0.a1 Prupe.8G169300_v2.0.a1 Prupe.8G169300_v2.0.a1
pyrus_communis	pycom05g11950 pycom06g01360 pycom10g10980
rosa_chinensis	RchiOBHm_Chr6g0278981 RchiOBHm_Chr7g0213541 RchiOBHm_Chr7g0243451
rosa_laevigata	RLG00000002797 RLG00000013178
rosa_multiflora	Rmu_co8436609.1_g000001 Rmu_sc0002080.1_g000041 Rmu_sc0008539.1_g000001 Rmu_sc0009618.1_g000016 Rmu_sc0010076.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245800 Rroxscaffold_7G00189290
rosa_rugosa	Rorug06G0120600 Rorug07G0142700 Rorug07G0142800 Rorug07G0319500
rosa_samantha	Rh6AG229300 Rh6BG234500 Rh6CG236700 Rh6DG228300 Rh7AG276000 Rh7BG270400 Rh7BG445400 Rh7CG294900 Rh7DG282600
rosa_wichuraiana	Rw0G023490 Rw6G020080 Rw7G023850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	47
AasI	GACNNNNNNGTC	1 cut(s)	398
Acc16I	TGCGCA	1 cut(s)	825
Acc36I	ACCTGC	1 cut(s)	47
AccB1I	GGYRCC	2 cut(s)	32, 706
AccB7I	CCANNNNNTGG	2 cut(s)	612, 716
AccI	GTMKAC	1 cut(s)	485
AccII	CGCG	1 cut(s)	115
AccIII	TCCGGA	1 cut(s)	202
AciI	CCGC	3 cut(s)	234, 455, 513
AclI	AACGTT	1 cut(s)	245
AclWI	GGATC	1 cut(s)	416
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	2 cut(s)	459, 617
AcuI	CTGAAG	1 cut(s)	434
AdeI	CACNNNGTG	1 cut(s)	220
AfaI	GTAC	1 cut(s)	915
AfiI	CCNNNNNNNGG	3 cut(s)	209, 612, 716
AgsI	TTSAA	6 cut(s)	272, 290, 344, 370, 436, 937
AjnI	CCWGG	2 cut(s)	549, 701
AluBI	AGCT	9 cut(s)	298, 309, 331, 406, 415, 448, 500, 629, 959
AluI	AGCT	9 cut(s)	298, 309, 331, 406, 415, 448, 500, 629, 959
Alw21I	GWGCWC	1 cut(s)	165
Alw44I	GTGCAC	1 cut(s)	161
AlwI	GGATC	1 cut(s)	416
Aor13HI	TCCGGA	1 cut(s)	202
AoxI	GGCC	2 cut(s)	61, 722
ApaLI	GTGCAC	1 cut(s)	161
ApeKI	GCWGC	3 cut(s)	331, 380, 445
ApoI	RAATTY	2 cut(s)	459, 617
ArsI	GACNNNNNNTTYG	2 cut(s)	834, 866
Asp700I	GAANNNNTTC	1 cut(s)	319
AspLEI	GCGC	2 cut(s)	117, 826
AspS9I	GGNCC	2 cut(s)	688, 723
AsuHPI	GGTGA	4 cut(s)	28, 91, 315, 692
AvaII	GGWCC	1 cut(s)	688
BaeGI	GKGCMC	2 cut(s)	165, 709
BanI	GGYRCC	2 cut(s)	32, 706
BbsI	GAAGAC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	165
BbvCI	CCTCAGC	1 cut(s)	327
BbvI	GCAGC	3 cut(s)	318, 367, 457
BccI	CCATC	5 cut(s)	110, 233, 633, 791, 899
BceAI	ACGGC	1 cut(s)	409
BciT130I	CCWGG	2 cut(s)	551, 703
BclI	TGATCA	2 cut(s)	622, 682
BfaI	CTAG	1 cut(s)	335
BfuAI	ACCTGC	1 cut(s)	47
BisI	GCNGC	3 cut(s)	332, 381, 446
BlsI	GCNGC	3 cut(s)	333, 382, 447
Bme1390I	CCNGG	2 cut(s)	551, 703
Bme18I	GGWCC	1 cut(s)	688
BmgT120I	GGNCC	2 cut(s)	688, 723
BmiI	GGNNCC	6 cut(s)	34, 82, 198, 644, 708, 969
BmrFI	CCNGG	2 cut(s)	551, 703
BmrI	ACTGGG	2 cut(s)	641, 906
BmsI	GCATC	4 cut(s)	265, 524, 781, 899
BmuI	ACTGGG	2 cut(s)	641, 906
BpiI	GAAGAC	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	881
Bpu10I	CCTNAGC	1 cut(s)	327
BsaJI	CCNNGG	3 cut(s)	156, 606, 702
BsaWI	WCCGGW	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 612, 716
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	4 cut(s)	446, 647, 864, 901
BseAI	TCCGGA	1 cut(s)	202
BseBI	CCWGG	2 cut(s)	551, 703
BseDI	CCNNGG	3 cut(s)	156, 606, 702
BseGI	GGATG	2 cut(s)	602, 890
BseLI	CCNNNNNNNGG	3 cut(s)	209, 612, 716
BseMII	CTCAG	3 cut(s)	341, 764, 807
BseNI	ACTGG	4 cut(s)	446, 647, 864, 901
BseRI	GAGGAG	3 cut(s)	34, 130, 552
BseSI	GKGCMC	2 cut(s)	165, 709
BseXI	GCAGC	3 cut(s)	318, 367, 457
Bsh1236I	CGCG	1 cut(s)	115
BshFI	GGCC	2 cut(s)	63, 724
BshNI	GGYRCC	2 cut(s)	32, 706
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	3 cut(s)	60, 78, 203
BslFI	GGGAC	1 cut(s)	881
BslI	CCNNNNNNNGG	3 cut(s)	209, 612, 716
BsmFI	GGGAC	1 cut(s)	881
BsnI	GGCC	2 cut(s)	63, 724
Bsp1286I	GDGCHC	2 cut(s)	165, 709
Bsp13I	TCCGGA	1 cut(s)	202
Bsp143I	GATC	3 cut(s)	421, 622, 682
BspACI	CCGC	3 cut(s)	234, 455, 513
BspANI	GGCC	2 cut(s)	63, 724
BspCNI	CTCAG	3 cut(s)	340, 763, 806
BspEI	TCCGGA	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	115
BspLI	GGNNCC	6 cut(s)	34, 82, 198, 644, 708, 969
BspMI	ACCTGC	1 cut(s)	47
BspPI	GGATC	1 cut(s)	416
BspT107I	GGYRCC	2 cut(s)	32, 706
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	4 cut(s)	446, 647, 864, 901
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	3 cut(s)	156, 606, 702
BssMI	GATC	3 cut(s)	421, 622, 682
BssT1I	CCWWGG	2 cut(s)	156, 606
Bst2UI	CCWGG	2 cut(s)	551, 703
Bst4CI	ACNGT	1 cut(s)	918
Bst6I	CTCTTC	2 cut(s)	255, 291
BstAPI	GCANNNNNTGC	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	722
BstDEI	CTNAG	4 cut(s)	327, 750, 793, 978
BstF5I	GGATG	2 cut(s)	602, 890
BstFNI	CGCG	1 cut(s)	115
BstHHI	GCGC	2 cut(s)	117, 826
BstKTI	GATC	3 cut(s)	424, 625, 685
BstMBI	GATC	3 cut(s)	421, 622, 682
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 412, 659
BstNI	CCWGG	2 cut(s)	551, 703
BstSCI	CCNGG	2 cut(s)	549, 701
BstSLI	GKGCMC	2 cut(s)	165, 709
BstUI	CGCG	1 cut(s)	115
BstV1I	GCAGC	3 cut(s)	318, 367, 457
BstV2I	GAAGAC	1 cut(s)	117
BsuRI	GGCC	2 cut(s)	63, 724
BtsCI	GGATG	2 cut(s)	602, 890
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	3 cut(s)	225, 486, 894
BveI	ACCTGC	1 cut(s)	47
Cac8I	GCNNGC	1 cut(s)	722
CfoI	GCGC	2 cut(s)	117, 826
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	2 cut(s)	688, 723
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	914
CspCI	CAANNNNNGTGG	2 cut(s)	845, 880
CviAII	CATG	4 cut(s)	525, 692, 871, 950
CviQI	GTAC	1 cut(s)	914
DdeI	CTNAG	4 cut(s)	327, 750, 793, 978
DpnI	GATC	3 cut(s)	423, 624, 684
DpnII	GATC	3 cut(s)	421, 622, 682
DraIII	CACNNNGTG	1 cut(s)	220
DrdI	GACNNNNNNGTC	1 cut(s)	398
DseDI	GACNNNNNNGTC	1 cut(s)	398
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	2 cut(s)	255, 291
EarI	CTCTTC	2 cut(s)	255, 291
EciI	GGCGGA	1 cut(s)	470
Eco130I	CCWWGG	2 cut(s)	156, 606
Eco47I	GGWCC	1 cut(s)	688
Eco57I	CTGAAG	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	723
EcoRII	CCWGG	2 cut(s)	549, 701
EcoT14I	CCWWGG	2 cut(s)	156, 606
ErhI	CCWWGG	2 cut(s)	156, 606
FaeI	CATG	4 cut(s)	528, 695, 874, 953
FaqI	GGGAC	1 cut(s)	881
FatI	CATG	4 cut(s)	524, 691, 870, 949
FbaI	TGATCA	2 cut(s)	622, 682
FblI	GTMKAC	1 cut(s)	485
Fnu4HI	GCNGC	3 cut(s)	332, 381, 446
FokI	GGATG	2 cut(s)	589, 877
Fsp4HI	GCNGC	3 cut(s)	332, 381, 446
FspBI	CTAG	1 cut(s)	335
FspI	TGCGCA	1 cut(s)	825
GlaI	GCGC	2 cut(s)	116, 825
GluI	GCNGC	3 cut(s)	332, 381, 446
GsuI	CTGGAG	1 cut(s)	881
HaeIII	GGCC	2 cut(s)	63, 724
HapII	CCGG	3 cut(s)	60, 78, 203
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	2 cut(s)	117, 826
Hin1II	CATG	4 cut(s)	528, 695, 874, 953
Hin6I	GCGC	2 cut(s)	115, 824
HinP1I	GCGC	2 cut(s)	115, 824
HindIII	AAGCTT	1 cut(s)	307
HinfI	GANTC	6 cut(s)	110, 320, 476, 529, 554, 791
HpaII	CCGG	3 cut(s)	60, 78, 203
HphI	GGTGA	4 cut(s)	28, 91, 315, 692
Hpy166II	GTNNAC	2 cut(s)	163, 486
Hpy188I	TCNGA	6 cut(s)	391, 465, 583, 753, 796, 814
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	2 cut(s)	163, 486
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	3 cut(s)	748, 795, 811
HpyCH4III	ACNGT	1 cut(s)	918
HpyCH4IV	ACGT	2 cut(s)	245, 399
HpyCH4V	TGCA	6 cut(s)	163, 278, 303, 383, 653, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 412, 659
HpyF3I	CTNAG	4 cut(s)	327, 750, 793, 978
HpySE526I	ACGT	2 cut(s)	245, 399
Hsp92II	CATG	4 cut(s)	528, 695, 874, 953
HspAI	GCGC	2 cut(s)	115, 824
Kpn2I	TCCGGA	1 cut(s)	202
Ksp22I	TGATCA	2 cut(s)	622, 682
Kzo9I	GATC	3 cut(s)	421, 622, 682
LmnI	GCTCC	3 cut(s)	47, 86, 648
Lsp1109I	GCAGC	3 cut(s)	318, 367, 457
LweI	GCATC	4 cut(s)	265, 524, 781, 899
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	2 cut(s)	245, 399
MaeIII	GTNAC	3 cut(s)	16, 212, 836
MalI	GATC	3 cut(s)	423, 624, 684
MboI	GATC	3 cut(s)	421, 622, 682
MboII	GAAGA	8 cut(s)	97, 117, 120, 272, 278, 284, 554, 965
MhlI	GDGCHC	2 cut(s)	165, 709
MluCI	AATT	7 cut(s)	344, 431, 459, 598, 617, 735, 931
MlyI	GAGTC	2 cut(s)	104, 785
MroI	TCCGGA	1 cut(s)	202
MroXI	GAANNNNTTC	1 cut(s)	319
MseI	TTAA	2 cut(s)	597, 782
MspA1I	CMGCKG	1 cut(s)	331
MspI	CCGG	3 cut(s)	60, 78, 203
MspR9I	CCNGG	2 cut(s)	551, 703
MvaI	CCWGG	2 cut(s)	551, 703
MvnI	CGCG	1 cut(s)	115
MwoI	GCNNNNNNNGC	3 cut(s)	39, 412, 659
NdeII	GATC	3 cut(s)	421, 622, 682
NlaIII	CATG	4 cut(s)	528, 695, 874, 953
NlaIV	GGNNCC	6 cut(s)	34, 82, 198, 644, 708, 969
NmuCI	GTSAC	3 cut(s)	16, 212, 836
NsbI	TGCGCA	1 cut(s)	825
PaqCI	CACCTGC	1 cut(s)	47
PcsI	WCGNNNNNNNCGW	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	319
PfeI	GAWTC	4 cut(s)	320, 476, 529, 554
PflMI	CCANNNNNTGG	2 cut(s)	612, 716
PkrI	GCNGC	3 cut(s)	333, 382, 447
PleI	GAGTC	2 cut(s)	104, 785
PpsI	GAGTC	2 cut(s)	104, 785
Psp1406I	AACGTT	1 cut(s)	245
Psp6I	CCWGG	2 cut(s)	549, 701
PspGI	CCWGG	2 cut(s)	549, 701
PspN4I	GGNNCC	6 cut(s)	34, 82, 198, 644, 708, 969
PspPI	GGNCC	2 cut(s)	688, 723
PvuII	CAGCTG	1 cut(s)	331
RsaI	GTAC	1 cut(s)	915
RsaNI	GTAC	1 cut(s)	914
SaqAI	TTAA	2 cut(s)	597, 782
SatI	GCNGC	3 cut(s)	332, 381, 446
Sau3AI	GATC	3 cut(s)	421, 622, 682
Sau96I	GGNCC	2 cut(s)	688, 723
SchI	GAGTC	2 cut(s)	104, 785
ScrFI	CCNGG	2 cut(s)	551, 703
SduI	GDGCHC	2 cut(s)	165, 709
SfaNI	GCATC	4 cut(s)	265, 524, 781, 899
SinI	GGWCC	1 cut(s)	688
Sse9I	AATT	7 cut(s)	344, 431, 459, 598, 617, 735, 931
SsiI	CCGC	3 cut(s)	234, 455, 513
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	2 cut(s)	549, 701
StyI	CCWWGG	2 cut(s)	156, 606
TaaI	ACNGT	1 cut(s)	918
TaiI	ACGT	2 cut(s)	248, 402
TaqI	TCGA	3 cut(s)	24, 87, 108
TaqII	GACCGA	1 cut(s)	200
TasI	AATT	7 cut(s)	344, 431, 459, 598, 617, 735, 931
TfiI	GAWTC	4 cut(s)	320, 476, 529, 554
Tru1I	TTAA	2 cut(s)	597, 782
Tru9I	TTAA	2 cut(s)	597, 782
TscAI	CASTG	3 cut(s)	225, 486, 901
TseFI	GTSAC	3 cut(s)	16, 212, 836
TseI	GCWGC	3 cut(s)	331, 380, 445
Tsp45I	GTSAC	3 cut(s)	16, 212, 836
TspDTI	ATGAA	4 cut(s)	345, 565, 591, 966
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	3 cut(s)	225, 486, 901
Van91I	CCANNNNNTGG	2 cut(s)	612, 716
VneI	GTGCAC	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	688
XapI	RAATTY	2 cut(s)	459, 617
XmiI	GTMKAC	1 cut(s)	485
XmnI	GAANNNNTTC	1 cut(s)	319
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.