Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009618.1

Orthogroup ID

OG0001720

Physical Location & Seq

Genomic Coordinates Reverse (-)

69176 .. 70570

Gene Structure 1395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009618.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

atgttggacaacaatattggcgggtatgttggtatgggggaaggatcctctcacaacttacacaagtacaataaggtttcaattgtacctcttgtattcttgatcttctatgaggtctctggggggccatttggcgttgaagacagtgtccaggcagccggtcccctgttagcccttcttggttttctggtttttgcaatcatatggagtgttccggaggccttgataactgcagaaatgggcactatgttccctgaaaatgggggatatgttgtttgggtttcatcggctttgggtccattttggggatttcagcaaggttgggtgaaatggcttagtggggtgattgataatgctctgtatcctgttctatttctggactatctgaagtcagcaattccagctttagaaagtggtttgccaaggacaattgcagtgttggctttgactgcaattctcacttatctgaactataggggtttaaccatagtgggctgggtagctattttactaggagtgttttcacttcttccttttatagtcatggggctgatagcaattcccaagatagagccttcgaggtggcttatcgtagatgtgggcactgttaattggagtttgtacttgaacacgcttttctggaatcttaattactgggattcaatcagtactctttcaggggaagtggaaaaccctagtaaaactcttccaaaagctctgttttatgctctaatcatggttgttctcggatacattttccctcttctgactggtactggagctattccagttgatcgtgcagtgtggtccgatggctattttgctgatattgctaaaatgctgggaggctcatggttaagaacctgggttctagcggcagctgctttgtcaaacatgggtatgtttgtggctgaaatgagcagcgactcatttcaacttctgggtatggcagaaattgggatgcttcctgcattctttgccaaacgatctcattatggtaccccacttacgggaatcttgttctctgcttctggtgtaattctgctctcgtggttgagtttccaagagattgtagcggcagagaactacttgtactgttttgggatgattatggaattcatagcattcgtgaagttaagaattcagcacccaaatctaccacggccttacaagatcccttttgggactgttggagctattttgatgtgtattcctcccacagtgttgatttttgtagttatagctcttgcttctctcaagatcatggctataagcgttgctgctgtgatagtcgggtttgttttgcagccttgtgttgagtacattaaaaagaagagatggtatgatttctccaggaattctgaccttccagatttccaatatgcatcagtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015203 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015846 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902047 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04113 ko04114 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04113 map04114 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

464

Amino Acids

50.99

Weight (kDa)

5.64

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31820 AT1G31830 AT1G31830 AT5G05630
fragaria_vesca	FvH4_2g15680 FvH4_2g15680 FvH4_4g35270 FvH4_5g24050 FvH4_5g24050
malus_domestica	MD06G1016700.v1.1 MD17G1241900.v1.1
prunus_persica	Prupe.5G019700_v2.0.a1 Prupe.8G169300_v2.0.a1 Prupe.8G169300_v2.0.a1 Prupe.8G169300_v2.0.a1 Prupe.8G169300_v2.0.a1 Prupe.8G169300_v2.0.a1
pyrus_communis	pycom05g11950 pycom06g01360 pycom10g10980
rosa_chinensis	RchiOBHm_Chr6g0278981 RchiOBHm_Chr7g0213541 RchiOBHm_Chr7g0243451
rosa_laevigata	RLG00000002797 RLG00000013178
rosa_multiflora	Rmu_co8436609.1_g000001 Rmu_sc0002080.1_g000041 Rmu_sc0008539.1_g000001 Rmu_sc0009618.1_g000016 Rmu_sc0010076.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245800 Rroxscaffold_7G00189290
rosa_rugosa	Rorug06G0120600 Rorug07G0142700 Rorug07G0142800 Rorug07G0319500
rosa_samantha	Rh6AG229300 Rh6BG234500 Rh6CG236700 Rh6DG228300 Rh7AG276000 Rh7BG270400 Rh7BG445400 Rh7CG294900 Rh7DG282600
rosa_wichuraiana	Rw0G023490 Rw6G020080 Rw7G023850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	998
AccB1I	GGYRCC	1 cut(s)	998
AccIII	TCCGGA	1 cut(s)	214
AciI	CCGC	3 cut(s)	21, 875, 1076
AclWI	GGATC	3 cut(s)	39, 52, 1168
AcsI	RAATTY	3 cut(s)	1115, 1140, 1357
AcuI	CTGAAG	1 cut(s)	407
AfaI	GTAC	8 cut(s)	68, 87, 623, 670, 775, 1000, 1094, 1322
AfiI	CCNNNNNNNGG	4 cut(s)	260, 305, 1009, 1010
AgsI	TTSAA	5 cut(s)	81, 140, 628, 663, 935
AjnI	CCWGG	3 cut(s)	150, 863, 1352
AluBI	AGCT	7 cut(s)	404, 503, 716, 782, 881, 1196, 1244
AluI	AGCT	7 cut(s)	404, 503, 716, 782, 881, 1196, 1244
Alw26I	GTCTC	1 cut(s)	121
AlwI	GGATC	3 cut(s)	39, 52, 1168
Aor13HI	TCCGGA	1 cut(s)	214
AoxI	GGCC	3 cut(s)	125, 219, 1163
ApeKI	GCWGC	6 cut(s)	155, 878, 881, 921, 1280, 1306
ApoI	RAATTY	3 cut(s)	1115, 1140, 1357
Asp718I	GGTACC	1 cut(s)	998
AspS9I	GGNCC	4 cut(s)	125, 161, 296, 807
AsuHPI	GGTGA	2 cut(s)	337, 355
AvaII	GGWCC	3 cut(s)	161, 296, 807
BaeGI	GKGCMC	2 cut(s)	245, 605
BamHI	GGATCC	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	998
BauI	CACGAG	1 cut(s)	1048
BbsI	GAAGAC	1 cut(s)	147
BbvI	GCAGC	6 cut(s)	167, 868, 890, 933, 1267, 1318
BccI	CCATC	2 cut(s)	806, 1332
BceAI	ACGGC	1 cut(s)	1178
BciT130I	CCWGG	3 cut(s)	152, 865, 1354
BciVI	GTATCC	2 cut(s)	372, 743
BcoDI	GTCTC	1 cut(s)	121
BfaI	CTAG	3 cut(s)	512, 696, 872
BfmI	CTRYAG	2 cut(s)	231, 472
BfuI	GTATCC	2 cut(s)	372, 743
BisI	GCNGC	8 cut(s)	156, 876, 879, 882, 922, 1077, 1281, 1307
BlsI	GCNGC	8 cut(s)	157, 877, 880, 883, 923, 1078, 1282, 1308
BmcAI	AGTACT	1 cut(s)	670
Bme1390I	CCNGG	3 cut(s)	152, 865, 1354
Bme18I	GGWCC	3 cut(s)	161, 296, 807
BmgT120I	GGNCC	4 cut(s)	125, 161, 296, 807
BmiI	GGNNCC	5 cut(s)	46, 126, 163, 297, 1000
BmrFI	CCNGG	3 cut(s)	152, 865, 1354
BmrI	ACTGGG	1 cut(s)	664
BmsI	GCATC	1 cut(s)	951
BmuI	ACTGGG	1 cut(s)	664
BpiI	GAAGAC	1 cut(s)	147
BpmI	CTGGAG	2 cut(s)	798, 1336
BpuEI	CTTGAG	1 cut(s)	1241
BsaI	GGTCTC	1 cut(s)	121
BsaJI	CCNNGG	3 cut(s)	422, 864, 1160
BsaWI	WCCGGW	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	4 cut(s)	260, 305, 1009, 1010
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	4 cut(s)	659, 775, 781, 788
BseAI	TCCGGA	1 cut(s)	214
BseBI	CCWGG	3 cut(s)	152, 865, 1354
BseDI	CCNNGG	3 cut(s)	422, 864, 1160
BseGI	GGATG	2 cut(s)	966, 1110
BseLI	CCNNNNNNNGG	4 cut(s)	260, 305, 1009, 1010
BseNI	ACTGG	4 cut(s)	659, 775, 781, 788
BseSI	GKGCMC	2 cut(s)	245, 605
BseXI	GCAGC	6 cut(s)	167, 868, 890, 933, 1267, 1318
BseYI	CCCAGC	2 cut(s)	495, 841
BsgI	GTGCAG	1 cut(s)	819
BshFI	GGCC	3 cut(s)	127, 221, 1165
BshNI	GGYRCC	1 cut(s)	998
BsiSI	CCGG	2 cut(s)	159, 215
BslFI	GGGAC	2 cut(s)	147, 1198
BslI	CCNNNNNNNGG	4 cut(s)	260, 305, 1009, 1010
BsmAI	GTCTC	1 cut(s)	121
BsmFI	GGGAC	2 cut(s)	147, 1198
BsmI	GAATGC	2 cut(s)	971, 1124
BsnI	GGCC	3 cut(s)	127, 221, 1165
Bso31I	GGTCTC	1 cut(s)	121
Bsp1286I	GDGCHC	2 cut(s)	245, 605
Bsp13I	TCCGGA	1 cut(s)	214
Bsp143I	GATC	6 cut(s)	44, 102, 793, 986, 1173, 1260
BspACI	CCGC	3 cut(s)	21, 875, 1076
BspANI	GGCC	3 cut(s)	127, 221, 1165
BspEI	TCCGGA	1 cut(s)	214
BspLI	GGNNCC	5 cut(s)	46, 126, 163, 297, 1000
BspMAI	CTGCAG	1 cut(s)	235
BspPI	GGATC	3 cut(s)	39, 52, 1168
BspT107I	GGYRCC	1 cut(s)	998
BspTNI	GGTCTC	1 cut(s)	121
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	4 cut(s)	659, 775, 781, 788
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	3 cut(s)	422, 864, 1160
BssMI	GATC	6 cut(s)	44, 102, 793, 986, 1173, 1260
BssSI	CACGAG	1 cut(s)	1048
BssT1I	CCWWGG	1 cut(s)	422
Bst2BI	CACGAG	1 cut(s)	1048
Bst2UI	CCWGG	3 cut(s)	152, 865, 1354
Bst4CI	ACNGT	5 cut(s)	146, 607, 1097, 1189, 1222
Bst6I	CTCTTC	3 cut(s)	711, 768, 1328
BstAPI	GCANNNNNTGC	1 cut(s)	977
BstDEI	CTNAG	1 cut(s)	335
BstDSI	CCRYGG	1 cut(s)	1160
BstF5I	GGATG	2 cut(s)	966, 1110
BstKTI	GATC	6 cut(s)	47, 105, 796, 989, 1176, 1263
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	6 cut(s)	44, 102, 793, 986, 1173, 1260
BstMWI	GCNNNNNNNGC	6 cut(s)	401, 440, 449, 830, 881, 977
BstNI	CCWGG	3 cut(s)	152, 865, 1354
BstSCI	CCNGG	3 cut(s)	150, 863, 1352
BstSFI	CTRYAG	2 cut(s)	231, 472
BstSLI	GKGCMC	2 cut(s)	245, 605
BstV1I	GCAGC	6 cut(s)	167, 868, 890, 933, 1267, 1318
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	2 cut(s)	44, 1173
BstYI	RGATCY	2 cut(s)	44, 1173
BsuI	GTATCC	2 cut(s)	372, 743
BsuRI	GGCC	3 cut(s)	127, 221, 1165
BtgI	CCRYGG	1 cut(s)	1160
BtsCI	GGATG	2 cut(s)	966, 1110
BtsI	GCAGTG	2 cut(s)	441, 807
BtsIMutI	CAGTG	6 cut(s)	151, 441, 603, 807, 1227, 1395
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	4 cut(s)	125, 161, 296, 807
Csp6I	GTAC	8 cut(s)	67, 86, 622, 669, 774, 999, 1093, 1321
CviAII	CATG	5 cut(s)	544, 736, 852, 895, 1264
CviQI	GTAC	8 cut(s)	67, 86, 622, 669, 774, 999, 1093, 1321
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	6 cut(s)	46, 104, 795, 988, 1175, 1262
DpnII	GATC	6 cut(s)	44, 102, 793, 986, 1173, 1260
Eam1104I	CTCTTC	3 cut(s)	711, 768, 1328
EarI	CTCTTC	3 cut(s)	711, 768, 1328
Eco130I	CCWWGG	1 cut(s)	422
Eco147I	AGGCCT	1 cut(s)	221
Eco31I	GGTCTC	1 cut(s)	121
Eco47I	GGWCC	3 cut(s)	161, 296, 807
Eco57I	CTGAAG	1 cut(s)	407
EcoRI	GAATTC	3 cut(s)	1115, 1140, 1357
EcoRII	CCWGG	3 cut(s)	150, 863, 1352
EcoT14I	CCWWGG	1 cut(s)	422
EcoT22I	ATGCAT	1 cut(s)	1387
ErhI	CCWWGG	1 cut(s)	422
FaeI	CATG	5 cut(s)	547, 739, 855, 898, 1267
FaqI	GGGAC	2 cut(s)	147, 1198
FatI	CATG	5 cut(s)	543, 735, 851, 894, 1263
FauI	CCCGC	1 cut(s)	14
FauNDI	CATATG	1 cut(s)	203
Fnu4HI	GCNGC	8 cut(s)	156, 876, 879, 882, 922, 1077, 1281, 1307
FokI	GGATG	2 cut(s)	973, 1117
Fsp4HI	GCNGC	8 cut(s)	156, 876, 879, 882, 922, 1077, 1281, 1307
FspBI	CTAG	3 cut(s)	512, 696, 872
GluI	GCNGC	8 cut(s)	156, 876, 879, 882, 922, 1077, 1281, 1307
GsaI	CCCAGC	2 cut(s)	499, 845
GsuI	CTGGAG	2 cut(s)	798, 1336
HaeIII	GGCC	3 cut(s)	127, 221, 1165
HapII	CCGG	2 cut(s)	159, 215
Hin1II	CATG	5 cut(s)	547, 739, 855, 898, 1267
HinfI	GANTC	4 cut(s)	643, 659, 926, 1014
HpaII	CCGG	2 cut(s)	159, 215
HphI	GGTGA	2 cut(s)	337, 355
Hpy188I	TCNGA	6 cut(s)	387, 468, 749, 768, 811, 1363
Hpy188III	TCNNGA	7 cut(s)	100, 215, 377, 640, 1129, 1258, 1370
HpyAV	CCTTC	4 cut(s)	35, 185, 585, 1376
HpyCH4III	ACNGT	5 cut(s)	146, 607, 1097, 1189, 1222
HpyCH4V	TGCA	8 cut(s)	197, 233, 434, 452, 800, 971, 1306, 1385
HpyF10VI	GCNNNNNNNGC	6 cut(s)	401, 440, 449, 830, 881, 977
HpyF3I	CTNAG	1 cut(s)	335
Hsp92II	CATG	5 cut(s)	547, 739, 855, 898, 1267
Kpn2I	TCCGGA	1 cut(s)	214
KpnI	GGTACC	1 cut(s)	1002
Kzo9I	GATC	6 cut(s)	44, 102, 793, 986, 1173, 1260
LmnI	GCTCC	2 cut(s)	779, 1193
Lsp1109I	GCAGC	6 cut(s)	167, 868, 890, 933, 1267, 1318
LweI	GCATC	1 cut(s)	951
MaeI	CTAG	3 cut(s)	512, 696, 872
MalI	GATC	6 cut(s)	46, 104, 795, 988, 1175, 1262
MboI	GATC	6 cut(s)	44, 102, 793, 986, 1173, 1260
MboII	GAAGA	6 cut(s)	97, 152, 521, 698, 755, 1345
MfeI	CAATTG	2 cut(s)	81, 429
MflI	RGATCY	2 cut(s)	44, 1173
MhlI	GDGCHC	2 cut(s)	245, 605
MlyI	GAGTC	1 cut(s)	920
MmeI	TCCRAC	1 cut(s)	1171
MnlI	CCTC	8 cut(s)	58, 99, 106, 211, 573, 771, 839, 1224
Mph1103I	ATGCAT	1 cut(s)	1387
MroI	TCCGGA	1 cut(s)	214
MseI	TTAA	6 cut(s)	482, 609, 648, 857, 1136, 1326
MslI	CAYNNNNRTG	1 cut(s)	899
MspA1I	CMGCKG	1 cut(s)	881
MspI	CCGG	2 cut(s)	159, 215
MspR9I	CCNGG	3 cut(s)	152, 865, 1354
MunI	CAATTG	2 cut(s)	81, 429
Mva1269I	GAATGC	2 cut(s)	971, 1124
MvaI	CCWGG	3 cut(s)	152, 865, 1354
MwoI	GCNNNNNNNGC	6 cut(s)	401, 440, 449, 830, 881, 977
NdeI	CATATG	1 cut(s)	203
NdeII	GATC	6 cut(s)	44, 102, 793, 986, 1173, 1260
NlaIII	CATG	5 cut(s)	547, 739, 855, 898, 1267
NlaIV	GGNNCC	5 cut(s)	46, 126, 163, 297, 1000
NsiI	ATGCAT	1 cut(s)	1387
PceI	AGGCCT	1 cut(s)	221
PctI	GAATGC	2 cut(s)	971, 1124
PfeI	GAWTC	3 cut(s)	643, 659, 1014
PflFI	GACNNNGTC	1 cut(s)	146
PfoI	TCCNGGA	1 cut(s)	1352
PkrI	GCNGC	8 cut(s)	157, 877, 880, 883, 923, 1078, 1282, 1308
PleI	GAGTC	1 cut(s)	920
PpsI	GAGTC	1 cut(s)	920
Psp6I	CCWGG	3 cut(s)	150, 863, 1352
PspFI	CCCAGC	2 cut(s)	495, 841
PspGI	CCWGG	3 cut(s)	150, 863, 1352
PspN4I	GGNNCC	5 cut(s)	46, 126, 163, 297, 1000
PspPI	GGNCC	4 cut(s)	125, 161, 296, 807
PsrI	GAACNNNNNNTAC	2 cut(s)	1076, 1108
PstI	CTGCAG	1 cut(s)	235
PsuI	RGATCY	2 cut(s)	44, 1173
PsyI	GACNNNGTC	1 cut(s)	146
PvuII	CAGCTG	1 cut(s)	881
RsaI	GTAC	8 cut(s)	68, 87, 623, 670, 775, 1000, 1094, 1322
RsaNI	GTAC	8 cut(s)	67, 86, 622, 669, 774, 999, 1093, 1321
RseI	CAYNNNNRTG	1 cut(s)	899
SaqAI	TTAA	6 cut(s)	482, 609, 648, 857, 1136, 1326
SatI	GCNGC	8 cut(s)	156, 876, 879, 882, 922, 1077, 1281, 1307
Sau3AI	GATC	6 cut(s)	44, 102, 793, 986, 1173, 1260
Sau96I	GGNCC	4 cut(s)	125, 161, 296, 807
ScaI	AGTACT	1 cut(s)	670
SchI	GAGTC	1 cut(s)	920
ScrFI	CCNGG	3 cut(s)	152, 865, 1354
SduI	GDGCHC	2 cut(s)	245, 605
SfaNI	GCATC	1 cut(s)	951
SfcI	CTRYAG	2 cut(s)	231, 472
SinI	GGWCC	3 cut(s)	161, 296, 807
SmiMI	CAYNNNNRTG	1 cut(s)	899
SmlI	CTYRAG	1 cut(s)	1256
SmoI	CTYRAG	1 cut(s)	1256
SseBI	AGGCCT	1 cut(s)	221
SsiI	CCGC	3 cut(s)	21, 875, 1076
SspI	AATATT	1 cut(s)	16
SspMI	CTAG	3 cut(s)	512, 696, 872
StuI	AGGCCT	1 cut(s)	221
StyD4I	CCNGG	3 cut(s)	150, 863, 1352
StyI	CCWWGG	1 cut(s)	422
TaaI	ACNGT	5 cut(s)	146, 607, 1097, 1189, 1222
TaqI	TCGA	1 cut(s)	578
TatI	WGTACW	5 cut(s)	66, 621, 668, 1092, 1320
TauI	GCSGC	2 cut(s)	878, 1079
TfiI	GAWTC	3 cut(s)	643, 659, 1014
Tru1I	TTAA	6 cut(s)	482, 609, 648, 857, 1136, 1326
Tru9I	TTAA	6 cut(s)	482, 609, 648, 857, 1136, 1326
TscAI	CASTG	6 cut(s)	151, 441, 610, 807, 1227, 1395
TseI	GCWGC	6 cut(s)	155, 878, 881, 921, 1280, 1306
TspDTI	ATGAA	2 cut(s)	273, 1108
TspRI	CASTG	6 cut(s)	151, 441, 610, 807, 1227, 1395
Tth111I	GACNNNGTC	1 cut(s)	146
VpaK11BI	GGWCC	3 cut(s)	161, 296, 807
XapI	RAATTY	3 cut(s)	1115, 1140, 1357
XspI	CTAG	3 cut(s)	512, 696, 872
ZrmI	AGTACT	1 cut(s)	670
Zsp2I	ATGCAT	1 cut(s)	1387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.