RchiOBHm_Chr7g0213541

polyamine transporter

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
30616511 .. 30618809
2299 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19112

Sequence Viewer

Length: 1464 bp
ATGGAGGGTATTATCTACACGAAATCAAAAACTAGAATTGCTGCGATCTGTTCCTGGTTTAAATTGAGGACCACGGCAACTAGGGAAGGCTCCATTGAAATGGGAGAGCACAACAATCCCGAATATGTTGTGGTTAGTGAAGCACAATCCCCTAGGGTAAATAACTTCAAGAAAGTCTCAGTTCTGCCCCTTGTCTTCCTCATCTTCTATGAGGTATCTGGGGGTCCATTTGGTATTGAGGACAGTGTTCAGGCTGCCGGTCCCCTTCTAGCGCTTATCGGGTTCTTGGTCTTTCCATTCATTTGGAGTGTTCCTGAGGCCTTGATTACTGCAGAGATGGGTACCATGTTCCCTGTGAATGGGGGTTATGTGGTTTGGGTTTCTTCGGCCCTGGGTCCCTTTTGGGGGTTTCAACAAGGATGGGTGAAATGGTTAAGTGGAGTCATTGATAATGCTTTGTACCCAGTTCTGTTTTTGGACTACTTGAAGTCAGCAATACCAGCTTTAGGCGGTGGACTTCCAAGAATCGTGGCAGTGTTAGCTTTGACATTGGTCCTCACTTACTTAAACTATAGGGGTTTAACCATTGTGGGATGGGTTGCTGTACTTTTAGGGATTTTCTCAATCATTCCTTTTGTGGTTATGGGACTTGTGGCAATTCCCAAGTTGGAGCCTTCAAGATGGTTAGTGGTGAGTCTACATAATGTGGACTGGAATTTGTATTTGAACACTCTCTTTTGGAATTTGAACTATTGGGATTCTATAAGTACACTTGCCGGAGAGGTGGAGAACCCAAAGAAAACTCTCCCCAAGGCTCTTTTTTATGCGTTGATTTTGGTTGTTGTTGGATATTTCTTCCCCCTTTTAATTGGTACTGGGGCTGTTCCGCTTGATCGTGAGTTGTGGACTGATGGTTACTTCTCTGATATTGCAAAAATTGTTGGGGGAGTTTGGTTGAGATGTTGGATCCAAGGGGCTGCAGCGATGTCAAATATGGGGATGTTTGTGGCTGAAATGAGCAGTGACTCTTTTCAACTTCTTGGGATGGCAGAAAGAGGGATGTTGCCTGAGTTCTTTGGTAAGCGGTCTCGTTATGGAACCCCAGTCATTGGCATTATGTTCTCAGCTTCCGGAGTCCTTTTGCTATCTTGGCTAAGCTTTCAAGAGATTGTAGCTGCAGAAAACTTCTTGTACTGTGTTGGAATGATTTTGGAGTTCATAGCATTTATAATATTACGGGTGAAGCATCCAGCTGTTTCTCAGCCATACAAGATTCCTGTTGGAACAGTTGGAACCATACTTTTGTGCATTCCGCCAACCCTGCTAATTGGTGTAGTGTTGGCTCTTTCTGAACTCAAGGTTGTGGTTGTGAGTCTTATAGCTATAGTGATCGGCCTTGTGATGCAGCCCTGTCTTACATATGTTGAGAGGAAGAGGTGGATGAAGTTCTCCATCAGTTCCTGA

Protein Analysis

487

Amino Acids

53.74

Weight (kDa)

8.14

Isoelectric Point (pI)

34.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 62 - 443 2.7e-39 Amino acid permease
AA_permease PF00324 79 - 448 8e-20 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1229
Acc65I GGTACC 1 cut(s) 341
AccB1I GGYRCC 1 cut(s) 341
AccB7I CCANNNNNTGG 1 cut(s) 1109
AccI GTMKAC 1 cut(s) 697
AccIII TCCGGA 1 cut(s) 1130
AciI CCGC 4 cut(s) 510, 887, 1084, 1313
AclWI GGATC 2 cut(s) 961, 974
AcsI RAATTY 2 cut(s) 715, 742
AfaI GTAC 6 cut(s) 343, 461, 606, 769, 874, 1193
AfeI AGCGCT 1 cut(s) 273
AfiI CCNNNNNNNGG 5 cut(s) 359, 404, 405, 506, 1109
AgsI TTSAA 9 cut(s) 98, 169, 413, 487, 678, 727, 748, 1034, 1163
AjnI CCWGG 2 cut(s) 53, 390
AluBI AGCT 7 cut(s) 503, 542, 1127, 1158, 1175, 1253, 1382
AluI AGCT 7 cut(s) 503, 542, 1127, 1158, 1175, 1253, 1382
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 2 cut(s) 181, 1092
AlwI GGATC 2 cut(s) 961, 974
AlwNI CAGNNNCTG 1 cut(s) 1461
Aor13HI TCCGGA 1 cut(s) 1130
Aor51HI AGCGCT 1 cut(s) 273
AoxI GGCC 3 cut(s) 318, 387, 1393
ApeKI GCWGC 6 cut(s) 41, 254, 977, 980, 1175, 1405
ApoI RAATTY 2 cut(s) 715, 742
Asp718I GGTACC 1 cut(s) 341
AspA2I CCTAGG 1 cut(s) 152
AspLEI GCGC 1 cut(s) 274
AspS9I GGNCC 6 cut(s) 69, 224, 260, 388, 395, 553
AsuHPI GGTGA 3 cut(s) 436, 703, 1252
AvaII GGWCC 5 cut(s) 69, 224, 260, 395, 553
AvrII CCTAGG 1 cut(s) 152
AxyI CCTNAGG 1 cut(s) 315
BamHI GGATCC 1 cut(s) 966
BanI GGYRCC 1 cut(s) 341
BbsI GAAGAC 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 111
BbvI GCAGC 6 cut(s) 28, 241, 964, 992, 1162, 1417
BccI CCATC 7 cut(s) 331, 414, 588, 675, 905, 1039, 1460
BceAI ACGGC 1 cut(s) 90
BciT130I CCWGG 2 cut(s) 55, 392
BcoDI GTCTC 2 cut(s) 181, 1092
BfaI CTAG 4 cut(s) 33, 81, 153, 269
BfmI CTRYAG 5 cut(s) 330, 571, 978, 1176, 1383
BfoI RGCGCY 1 cut(s) 275
BisI GCNGC 6 cut(s) 42, 255, 978, 981, 1176, 1406
BlnI CCTAGG 1 cut(s) 152
BlpI GCTNAGC 1 cut(s) 1154
BlsI GCNGC 6 cut(s) 43, 256, 979, 982, 1177, 1407
Bme1390I CCNGG 2 cut(s) 55, 392
Bme18I GGWCC 5 cut(s) 69, 224, 260, 395, 553
BmgT120I GGNCC 6 cut(s) 69, 224, 260, 388, 395, 553
BmrFI CCNGG 2 cut(s) 55, 392
BmrI ACTGGG 3 cut(s) 458, 885, 1097
BmsI GCATC 2 cut(s) 1255, 1392
BmuI ACTGGG 3 cut(s) 458, 885, 1097
BoxI GACNNNNGTC 1 cut(s) 551
BpiI GAAGAC 1 cut(s) 187
Bpu1102I GCTNAGC 1 cut(s) 1154
BpuEI CTTGAG 1 cut(s) 1340
BsaI GGTCTC 1 cut(s) 1092
BsaJI CCNNGG 6 cut(s) 72, 152, 390, 391, 810, 970
BsaWI WCCGGW 1 cut(s) 1130
Bsc4I CCNNNNNNNGG 5 cut(s) 359, 404, 405, 506, 1109
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 4 cut(s) 464, 716, 880, 1103
Bse21I CCTNAGG 1 cut(s) 315
BseAI TCCGGA 1 cut(s) 1130
BseBI CCWGG 2 cut(s) 55, 392
BseDI CCNNGG 6 cut(s) 72, 152, 390, 391, 810, 970
BseGI GGATG 7 cut(s) 425, 599, 1005, 1050, 1065, 1246, 1446
BseLI CCNNNNNNNGG 5 cut(s) 359, 404, 405, 506, 1109
BseMII CTCAG 5 cut(s) 192, 306, 1059, 1137, 1274
BseNI ACTGG 4 cut(s) 464, 716, 880, 1103
BseXI GCAGC 6 cut(s) 28, 241, 964, 992, 1162, 1417
BshFI GGCC 3 cut(s) 320, 389, 1395
BshNI GGYRCC 1 cut(s) 341
BsiHKAI GWGCWC 1 cut(s) 111
BsiSI CCGG 3 cut(s) 258, 777, 1131
BslFI GGGAC 3 cut(s) 246, 381, 660
BslI CCNNNNNNNGG 5 cut(s) 359, 404, 405, 506, 1109
BsmAI GTCTC 2 cut(s) 181, 1092
BsmFI GGGAC 3 cut(s) 246, 381, 660
BsmI GAATGC 1 cut(s) 1308
BsnI GGCC 3 cut(s) 320, 389, 1395
Bso31I GGTCTC 1 cut(s) 1092
Bsp1286I GDGCHC 1 cut(s) 111
Bsp13I TCCGGA 1 cut(s) 1130
Bsp143I GATC 4 cut(s) 45, 892, 966, 1389
Bsp1720I GCTNAGC 1 cut(s) 1154
BspACI CCGC 4 cut(s) 510, 887, 1084, 1313
BspANI GGCC 3 cut(s) 320, 389, 1395
BspCNI CTCAG 5 cut(s) 191, 307, 1060, 1136, 1273
BspEI TCCGGA 1 cut(s) 1130
BspMAI CTGCAG 3 cut(s) 334, 982, 1180
BspPI GGATC 2 cut(s) 961, 974
BspT107I GGYRCC 1 cut(s) 341
BspTNI GGTCTC 1 cut(s) 1092
BsrFI RCCGGY 1 cut(s) 257
BsrI ACTGG 4 cut(s) 464, 716, 880, 1103
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 6 cut(s) 72, 152, 390, 391, 810, 970
BssMI GATC 4 cut(s) 45, 892, 966, 1389
BssT1I CCWWGG 3 cut(s) 152, 810, 970
Bst2UI CCWGG 2 cut(s) 55, 392
Bst4CI ACNGT 3 cut(s) 245, 1196, 1288
Bst6I CTCTTC 1 cut(s) 1427
BstDEI CTNAG 6 cut(s) 178, 315, 1068, 1123, 1154, 1260
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 7 cut(s) 425, 599, 1005, 1050, 1065, 1246, 1446
BstH2I RGCGCY 1 cut(s) 275
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 4 cut(s) 48, 895, 969, 1392
BstMAI GTCTC 2 cut(s) 181, 1092
BstMBI GATC 4 cut(s) 45, 892, 966, 1389
BstMWI GCNNNNNNNGC 4 cut(s) 500, 539, 1150, 1321
BstNI CCWGG 2 cut(s) 55, 392
BstPAI GACNNNNGTC 1 cut(s) 551
BstSCI CCNGG 2 cut(s) 53, 390
BstSFI CTRYAG 5 cut(s) 330, 571, 978, 1176, 1383
BstV1I GCAGC 6 cut(s) 28, 241, 964, 992, 1162, 1417
BstV2I GAAGAC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 966
BstXI CCANNNNNNTGG 2 cut(s) 100, 303
BstYI RGATCY 1 cut(s) 966
Bsu36I CCTNAGG 1 cut(s) 315
BsuRI GGCC 3 cut(s) 320, 389, 1395
BtgI CCRYGG 1 cut(s) 72
BtgZI GCGATG 1 cut(s) 998
BtsCI GGATG 7 cut(s) 425, 599, 1005, 1050, 1065, 1246, 1446
BtsI GCAGTG 2 cut(s) 540, 1027
BtsIMutI CAGTG 3 cut(s) 250, 540, 1027
CaiI CAGNNNCTG 1 cut(s) 1461
CfoI GCGC 1 cut(s) 274
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 6 cut(s) 69, 224, 260, 388, 395, 553
Csp6I GTAC 6 cut(s) 342, 460, 605, 768, 873, 1192
CspCI CAANNNNNGTGG 2 cut(s) 510, 545
CviAII CATG 1 cut(s) 346
CviQI GTAC 6 cut(s) 342, 460, 605, 768, 873, 1192
DdeI CTNAG 6 cut(s) 178, 315, 1068, 1123, 1154, 1260
DpnI GATC 4 cut(s) 47, 894, 968, 1391
DpnII GATC 4 cut(s) 45, 892, 966, 1389
DraI TTTAAA 1 cut(s) 61
Eam1104I CTCTTC 1 cut(s) 1427
EarI CTCTTC 1 cut(s) 1427
EciI GGCGGA 1 cut(s) 1302
Eco130I CCWWGG 3 cut(s) 152, 810, 970
Eco147I AGGCCT 1 cut(s) 320
Eco31I GGTCTC 1 cut(s) 1092
Eco47I GGWCC 5 cut(s) 69, 224, 260, 395, 553
Eco47III AGCGCT 1 cut(s) 273
Eco81I CCTNAGG 1 cut(s) 315
EcoO109I RGGNCCY 1 cut(s) 395
EcoRII CCWGG 2 cut(s) 53, 390
EcoT14I CCWWGG 3 cut(s) 152, 810, 970
ErhI CCWWGG 3 cut(s) 152, 810, 970
FaeI CATG 1 cut(s) 349
FaqI GGGAC 3 cut(s) 246, 381, 660
FatI CATG 1 cut(s) 345
FauNDI CATATG 1 cut(s) 1420
FblI GTMKAC 1 cut(s) 697
Fnu4HI GCNGC 6 cut(s) 42, 255, 978, 981, 1176, 1406
FokI GGATG 7 cut(s) 432, 606, 1012, 1057, 1072, 1233, 1453
Fsp4HI GCNGC 6 cut(s) 42, 255, 978, 981, 1176, 1406
FspBI CTAG 4 cut(s) 33, 81, 153, 269
GlaI GCGC 1 cut(s) 273
GluI GCNGC 6 cut(s) 42, 255, 978, 981, 1176, 1406
HaeII RGCGCY 1 cut(s) 275
HaeIII GGCC 3 cut(s) 320, 389, 1395
HapII CCGG 3 cut(s) 258, 777, 1131
HhaI GCGC 1 cut(s) 274
Hin1II CATG 1 cut(s) 349
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HindIII AAGCTT 1 cut(s) 1156
HinfI GANTC 8 cut(s) 441, 525, 694, 758, 1025, 1134, 1273, 1372
HpaII CCGG 3 cut(s) 258, 777, 1131
HphI GGTGA 3 cut(s) 436, 703, 1252
Hpy166II GTNNAC 5 cut(s) 515, 698, 709, 770, 906
Hpy188I TCNGA 2 cut(s) 925, 1351
Hpy188III TCNNGA 8 cut(s) 119, 169, 314, 678, 896, 1131, 1163, 1461
Hpy8I GTNNAC 5 cut(s) 515, 698, 709, 770, 906
HpyAV CCTTC 3 cut(s) 80, 275, 684
HpyCH4III ACNGT 3 cut(s) 245, 1196, 1288
HpyCH4V TGCA 6 cut(s) 332, 932, 980, 1178, 1308, 1405
HpyF10VI GCNNNNNNNGC 4 cut(s) 500, 539, 1150, 1321
HpyF3I CTNAG 6 cut(s) 178, 315, 1068, 1123, 1154, 1260
Hsp92II CATG 1 cut(s) 349
HspAI GCGC 1 cut(s) 272
KflI GGGWCCC 1 cut(s) 395
Kpn2I TCCGGA 1 cut(s) 1130
KpnI GGTACC 1 cut(s) 345
Kzo9I GATC 4 cut(s) 45, 892, 966, 1389
LmnI GCTCC 2 cut(s) 95, 670
Lsp1109I GCAGC 6 cut(s) 28, 241, 964, 992, 1162, 1417
LweI GCATC 2 cut(s) 1255, 1392
MaeI CTAG 4 cut(s) 33, 81, 153, 269
MaeIII GTNAC 2 cut(s) 914, 1022
MalI GATC 4 cut(s) 47, 894, 968, 1391
MboI GATC 4 cut(s) 45, 892, 966, 1389
MboII GAAGA 5 cut(s) 187, 196, 375, 847, 1444
MflI RGATCY 1 cut(s) 966
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 8 cut(s) 36, 62, 657, 715, 742, 867, 936, 1326
MlyI GAGTC 5 cut(s) 450, 703, 1019, 1143, 1381
MmeI TCCRAC 6 cut(s) 648, 826, 944, 1180, 1261, 1270
MroI TCCGGA 1 cut(s) 1130
MseI TTAA 5 cut(s) 60, 434, 566, 581, 866
MslI CAYNNNNRTG 1 cut(s) 98
MspA1I CMGCKG 1 cut(s) 1253
MspI CCGG 3 cut(s) 258, 777, 1131
MspR9I CCNGG 2 cut(s) 55, 392
Mva1269I GAATGC 1 cut(s) 1308
MvaI CCWGG 2 cut(s) 55, 392
MwoI GCNNNNNNNGC 4 cut(s) 500, 539, 1150, 1321
NdeI CATATG 1 cut(s) 1420
NdeII GATC 4 cut(s) 45, 892, 966, 1389
NlaIII CATG 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 1022
PasI CCCWGGG 1 cut(s) 391
PceI AGGCCT 1 cut(s) 320
PctI GAATGC 1 cut(s) 1308
PfeI GAWTC 3 cut(s) 525, 758, 1273
PflMI CCANNNNNTGG 1 cut(s) 1109
PkrI GCNGC 6 cut(s) 43, 256, 979, 982, 1177, 1407
PleI GAGTC 5 cut(s) 449, 702, 1019, 1142, 1380
PpsI GAGTC 5 cut(s) 449, 702, 1019, 1142, 1380
PpuMI RGGWCCY 1 cut(s) 395
PshAI GACNNNNGTC 1 cut(s) 551
PsiI TTATAA 1 cut(s) 1229
Psp5II RGGWCCY 1 cut(s) 395
Psp6I CCWGG 2 cut(s) 53, 390
PspGI CCWGG 2 cut(s) 53, 390
PspPI GGNCC 6 cut(s) 69, 224, 260, 388, 395, 553
PspPPI RGGWCCY 1 cut(s) 395
PstI CTGCAG 3 cut(s) 334, 982, 1180
PstNI CAGNNNCTG 1 cut(s) 1461
PsuI RGATCY 1 cut(s) 966
PvuII CAGCTG 1 cut(s) 1253
RsaI GTAC 6 cut(s) 343, 461, 606, 769, 874, 1193
RsaNI GTAC 6 cut(s) 342, 460, 605, 768, 873, 1192
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 5 cut(s) 60, 434, 566, 581, 866
SatI GCNGC 6 cut(s) 42, 255, 978, 981, 1176, 1406
Sau3AI GATC 4 cut(s) 45, 892, 966, 1389
Sau96I GGNCC 6 cut(s) 69, 224, 260, 388, 395, 553
SchI GAGTC 5 cut(s) 450, 703, 1019, 1143, 1381
ScrFI CCNGG 2 cut(s) 55, 392
SduI GDGCHC 1 cut(s) 111
SfaNI GCATC 2 cut(s) 1255, 1392
SfcI CTRYAG 5 cut(s) 330, 571, 978, 1176, 1383
SinI GGWCC 5 cut(s) 69, 224, 260, 395, 553
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 1355
SmoI CTYRAG 1 cut(s) 1355
Sse9I AATT 8 cut(s) 36, 62, 657, 715, 742, 867, 936, 1326
SseBI AGGCCT 1 cut(s) 320
SsiI CCGC 4 cut(s) 510, 887, 1084, 1313
SspI AATATT 1 cut(s) 1233
SspMI CTAG 4 cut(s) 33, 81, 153, 269
StuI AGGCCT 1 cut(s) 320
StyD4I CCNGG 2 cut(s) 53, 390
StyI CCWWGG 3 cut(s) 152, 810, 970
TaaI ACNGT 3 cut(s) 245, 1196, 1288
TasI AATT 8 cut(s) 36, 62, 657, 715, 742, 867, 936, 1326
TatI WGTACW 3 cut(s) 604, 767, 1191
TfiI GAWTC 3 cut(s) 525, 758, 1273
Tru1I TTAA 5 cut(s) 60, 434, 566, 581, 866
Tru9I TTAA 5 cut(s) 60, 434, 566, 581, 866
TscAI CASTG 3 cut(s) 250, 540, 1027
TseFI GTSAC 1 cut(s) 1022
TseI GCWGC 6 cut(s) 41, 254, 977, 980, 1175, 1405
Tsp45I GTSAC 1 cut(s) 1022
TspDTI ATGAA 3 cut(s) 289, 1207, 1457
TspRI CASTG 3 cut(s) 250, 540, 1027
Van91I CCANNNNNTGG 1 cut(s) 1109
VpaK11BI GGWCC 5 cut(s) 69, 224, 260, 395, 553
XapI RAATTY 2 cut(s) 715, 742
XmaJI CCTAGG 1 cut(s) 152
XmiI GTMKAC 1 cut(s) 697
XspI CTAG 4 cut(s) 33, 81, 153, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.