AT1G31830

amino acid permease family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
11418589 .. 11420961
2373 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G31830.1

Sequence Viewer

Length: 1488 bp
ATGCAGAAGCGGAGAATCATCACTGTGAACCCCTCCGCGTCTATTGAGATGAGTCAGTACGAGAATAATGAAGTTCCTTACTCAAGTGTCGGTGCTGATGAGGTTCCATCATCACCGCCTAAAGCTACCGATAAGATTCGGAAAGTTTCCATGTTGCCACTTGTTTTCCTCATATTCTATGAAGTCTCAGGAGGTCCTTTTGGTGTAGAGGATAGTGTGAATGCAGCAGGACCATTATTAGCTCTTCTAGGGTTTGTGATCTTTCCTTTCATTTGGAGTATCCCTGAGGCTTTGATTACTGCGGAGATGGGAACAATGTATCCCGAGAATGGTGGTTATGTTGTGTGGGTTTCCTCTGCTTTGGGACCTTTTTGGGGGTTTCAGCAAGGTTGGATGAAATGGCTTAGTGGTGTTATTGATAACGCTTTGTATCCTGTTCTGTTTCTTGACTATTTGAAGTCTGGAGTCCCGGCTTTAGGTAGCGGTTTACCGAGAGTTGCATCGATCTTGGTGCTGACTATTTTGTTGACGTATCTGAACTACAGGGGACTAACTATAGTTGGTTGGGTTGCTGTGCTTATGGGAGTTTTCTCCATCCTTCCGTTTGCTGTGATGGGTTTGATTTCGATTCCGCAGCTAGAGCCTTCGAGATGGCTTGTGATGGACTTAGGGAATGTGAACTGGAATTTGTATCTTAACACGCTTTTCTGGAATCTAAACTATTGGGACTCGATTAGTACACTAGCTGGTGAAGTTGAAAACCCCAACCATACACTTCCAAAGGCTTTGTTTTATGGTGTGATCTTAGTTGCTTGTTCTTACATCTTCCCTCTTTTGGCTGGAATCGGGGCAATCCCGCTAGAGCGTGAGAAATGGACAGATGGGTATTTTTCTGATGTGGCCAAAGCTCTTGGTGGAGCGTGGTTGAGATGGTGGGTTCAAGCGGCTGCAGCTACATCAAACATGGGAATGTTTATAGCCGAGATGAGTAGTGACTCTTTTCAGCTTCTCGGAATGGCTGAGCGCGGTATGCTTCCCGAGTTCTTTGCCAAAAGGTCACGTTACGGGACACCTTTACTAGGGATTCTGTTTTCAGCGTCAGGTGTTGTTCTCTTGTCTTGGCTAAGCTTTCAAGAGATTGTAGCTGCAGAGAACTTACTCTACTGCGTTGGTATGATCTTAGAGTTTATAGCGTTTGTTAGAATGAGAATGAAACACCCTGCTGCATCAAGACCGTACAAGATACCTATTGGAACCACAGGTTCGATCCTCATGTGTATTCCTCCAACCATACTGATCTGTGCTGTTGTAGCACTCTCGTCTCTTAAAGTAGCTGCAGTGAGCATTGTGATGATGATCATTGGTTTCCTGATACATCCTTTACTGAACCATATGGATCGAAAGAGATGGGTCAAATTCTCCATCAGTTCTGACTTACCGGACCTTCAACAGCAGACTCGGGAATACGAAGAAACTCTAATACGTTAA

Protein Analysis

495

Amino Acids

54.83

Weight (kDa)

5.92

Isoelectric Point (pI)

41.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 51 - 453 1.5e-40 Amino acid permease
AA_permease PF00324 72 - 440 1.8e-19 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 38, 1026
AciI CCGC 9 cut(s) 10, 36, 116, 302, 483, 632, 857, 944, 1026
AclWI GGATC 2 cut(s) 1261, 1404
AcoI YGGCCR 1 cut(s) 900
AcsI RAATTY 2 cut(s) 685, 1415
AfaI GTAC 3 cut(s) 59, 739, 1238
AfiI CCNNNNNNNGG 5 cut(s) 329, 374, 476, 835, 1079
AgsI TTSAA 5 cut(s) 457, 758, 941, 1133, 1448
AloI GAACNNNNNNTCC 2 cut(s) 304, 336
Alw26I GTCTC 2 cut(s) 190, 1326
AlwI GGATC 2 cut(s) 1261, 1404
Ama87I CYCGRG 3 cut(s) 323, 1037, 1458
AoxI GGCC 1 cut(s) 900
ApeKI GCWGC 7 cut(s) 224, 634, 947, 950, 1145, 1223, 1334
ApoI RAATTY 2 cut(s) 685, 1415
AspLEI GCGC 1 cut(s) 1026
AspS9I GGNCC 4 cut(s) 194, 230, 365, 1441
AsuC2I CCSGG 1 cut(s) 470
AsuHPI GGTGA 2 cut(s) 105, 761
AvaI CYCGRG 3 cut(s) 323, 1037, 1458
AvaII GGWCC 4 cut(s) 194, 230, 365, 1441
AxyI CCTNAGG 1 cut(s) 285
BalI TGGCCA 1 cut(s) 902
BbvI GCAGC 7 cut(s) 236, 646, 934, 962, 1132, 1210, 1321
BcgI CGANNNNNNTGC 4 cut(s) 493, 527, 1028, 1062
BciVI GTATCC 3 cut(s) 290, 330, 441
BclI TGATCA 1 cut(s) 1356
BcnI CCSGG 1 cut(s) 470
BcoDI GTCTC 2 cut(s) 190, 1326
BfaI CTAG 5 cut(s) 248, 638, 743, 860, 1079
BfmI CTRYAG 5 cut(s) 541, 555, 948, 1146, 1335
BfuI GTATCC 3 cut(s) 290, 330, 441
BisI GCNGC 8 cut(s) 225, 635, 945, 948, 951, 1146, 1224, 1335
BlpI GCTNAGC 2 cut(s) 1020, 1124
BlsI GCNGC 8 cut(s) 226, 636, 946, 949, 952, 1147, 1225, 1336
Bme1390I CCNGG 1 cut(s) 470
Bme18I GGWCC 4 cut(s) 194, 230, 365, 1441
BmeT110I CYCGRG 3 cut(s) 323, 1037, 1458
BmgT120I GGNCC 4 cut(s) 194, 230, 365, 1441
BmiI GGNNCC 3 cut(s) 105, 366, 1255
BmrFI CCNGG 1 cut(s) 470
BmsI GCATC 2 cut(s) 509, 1235
BpmI CTGGAG 1 cut(s) 483
Bpu1102I GCTNAGC 2 cut(s) 1020, 1124
BpuEI CTTGAG 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 470
Bsa29I ATCGAT 1 cut(s) 503
BsaBI GATNNNNATC 1 cut(s) 1355
BsaWI WCCGGW 1 cut(s) 1438
Bsc4I CCNNNNNNNGG 5 cut(s) 329, 374, 476, 835, 1079
Bse1I ACTGG 1 cut(s) 686
Bse21I CCTNAGG 1 cut(s) 285
Bse8I GATNNNNATC 1 cut(s) 1355
BseCI ATCGAT 1 cut(s) 503
BseGI GGATG 3 cut(s) 399, 594, 1375
BseJI GATNNNNATC 1 cut(s) 1355
BseLI CCNNNNNNNGG 5 cut(s) 329, 374, 476, 835, 1079
BseMII CTCAG 3 cut(s) 201, 276, 1011
BseNI ACTGG 1 cut(s) 686
BseXI GCAGC 7 cut(s) 236, 646, 934, 962, 1132, 1210, 1321
Bsh1236I CGCG 2 cut(s) 38, 1026
BshFI GGCC 1 cut(s) 902
BshVI ATCGAT 1 cut(s) 503
BsiHKCI CYCGRG 3 cut(s) 323, 1037, 1458
BsiSI CCGG 2 cut(s) 470, 1439
BslFI GGGAC 5 cut(s) 378, 452, 561, 740, 1081
BslI CCNNNNNNNGG 5 cut(s) 329, 374, 476, 835, 1079
BsmAI GTCTC 2 cut(s) 190, 1326
BsmBI CGTCTC 1 cut(s) 1326
BsmFI GGGAC 5 cut(s) 378, 452, 561, 740, 1081
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 1 cut(s) 902
BsoBI CYCGRG 3 cut(s) 323, 1037, 1458
Bsp143I GATC 8 cut(s) 258, 504, 801, 1176, 1266, 1296, 1356, 1396
Bsp1720I GCTNAGC 2 cut(s) 1020, 1124
BspACI CCGC 9 cut(s) 10, 36, 116, 302, 483, 632, 857, 944, 1026
BspANI GGCC 1 cut(s) 902
BspCNI CTCAG 3 cut(s) 200, 277, 1012
BspDI ATCGAT 1 cut(s) 503
BspFNI CGCG 2 cut(s) 38, 1026
BspLI GGNNCC 3 cut(s) 105, 366, 1255
BspMAI CTGCAG 3 cut(s) 952, 1150, 1339
BspPI GGATC 2 cut(s) 1261, 1404
BspQI GCTCTTC 1 cut(s) 249
BsrI ACTGG 1 cut(s) 686
BssMI GATC 8 cut(s) 258, 504, 801, 1176, 1266, 1296, 1356, 1396
Bst4CI ACNGT 2 cut(s) 25, 1236
Bst6I CTCTTC 1 cut(s) 249
BstDEI CTNAG 8 cut(s) 187, 285, 404, 667, 805, 1020, 1124, 1180
BstENI CCTNNNNNAGG 1 cut(s) 1077
BstF5I GGATG 3 cut(s) 399, 594, 1375
BstFNI CGCG 2 cut(s) 38, 1026
BstHHI GCGC 1 cut(s) 1026
BstKTI GATC 8 cut(s) 261, 507, 804, 1179, 1269, 1299, 1359, 1399
BstMAI GTCTC 2 cut(s) 190, 1326
BstMBI GATC 8 cut(s) 258, 504, 801, 1176, 1266, 1296, 1356, 1396
BstMWI GCNNNNNNNGC 4 cut(s) 640, 950, 1030, 1310
BstSCI CCNGG 1 cut(s) 468
BstSFI CTRYAG 5 cut(s) 541, 555, 948, 1146, 1335
BstUI CGCG 2 cut(s) 38, 1026
BstV1I GCAGC 7 cut(s) 236, 646, 934, 962, 1132, 1210, 1321
Bsu15I ATCGAT 1 cut(s) 503
Bsu36I CCTNAGG 1 cut(s) 285
BsuI GTATCC 3 cut(s) 290, 330, 441
BsuRI GGCC 1 cut(s) 902
BsuTUI ATCGAT 1 cut(s) 503
BtsCI GGATG 3 cut(s) 399, 594, 1375
BtsI GCAGTG 1 cut(s) 1344
BtsIMutI CAGTG 2 cut(s) 21, 1344
CfoI GCGC 1 cut(s) 1026
Cfr13I GGNCC 4 cut(s) 194, 230, 365, 1441
ClaI ATCGAT 1 cut(s) 503
CseI GACGC 2 cut(s) 27, 1086
Csp6I GTAC 3 cut(s) 58, 738, 1237
CviAII CATG 3 cut(s) 151, 964, 1273
CviQI GTAC 3 cut(s) 58, 738, 1237
DdeI CTNAG 8 cut(s) 187, 285, 404, 667, 805, 1020, 1124, 1180
DpnI GATC 8 cut(s) 260, 506, 803, 1178, 1268, 1298, 1358, 1398
DpnII GATC 8 cut(s) 258, 504, 801, 1176, 1266, 1296, 1356, 1396
EaeI YGGCCR 1 cut(s) 900
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco47I GGWCC 4 cut(s) 194, 230, 365, 1441
Eco81I CCTNAGG 1 cut(s) 285
Eco88I CYCGRG 3 cut(s) 323, 1037, 1458
EcoNI CCTNNNNNAGG 1 cut(s) 1077
EcoO109I RGGNCCY 2 cut(s) 194, 365
Esp3I CGTCTC 1 cut(s) 1326
FaeI CATG 3 cut(s) 154, 967, 1276
FaqI GGGAC 5 cut(s) 378, 452, 561, 740, 1081
FatI CATG 3 cut(s) 150, 963, 1272
FauI CCCGC 1 cut(s) 864
FauNDI CATATG 1 cut(s) 1392
FbaI TGATCA 1 cut(s) 1356
Fnu4HI GCNGC 8 cut(s) 225, 635, 945, 948, 951, 1146, 1224, 1335
FokI GGATG 3 cut(s) 406, 581, 1362
Fsp4HI GCNGC 8 cut(s) 225, 635, 945, 948, 951, 1146, 1224, 1335
FspBI CTAG 5 cut(s) 248, 638, 743, 860, 1079
GlaI GCGC 1 cut(s) 1025
GluI GCNGC 8 cut(s) 225, 635, 945, 948, 951, 1146, 1224, 1335
GsuI CTGGAG 1 cut(s) 483
HaeIII GGCC 1 cut(s) 902
HapII CCGG 2 cut(s) 470, 1439
HgaI GACGC 2 cut(s) 27, 1086
HhaI GCGC 1 cut(s) 1026
Hin1II CATG 3 cut(s) 154, 967, 1276
Hin6I GCGC 1 cut(s) 1024
HinP1I GCGC 1 cut(s) 1024
HincII GTYRAC 1 cut(s) 528
HindII GTYRAC 1 cut(s) 528
HindIII AAGCTT 1 cut(s) 1126
HpaII CCGG 2 cut(s) 470, 1439
HphI GGTGA 2 cut(s) 105, 761
Hpy166II GTNNAC 5 cut(s) 28, 488, 528, 679, 740
Hpy188I TCNGA 5 cut(s) 141, 537, 895, 1013, 1432
Hpy8I GTNNAC 5 cut(s) 28, 488, 528, 679, 740
HpyAV CCTTC 3 cut(s) 608, 654, 1454
HpyCH4III ACNGT 2 cut(s) 25, 1236
HpyCH4IV ACGT 3 cut(s) 530, 1060, 1483
HpyCH4V TGCA 7 cut(s) 4, 224, 500, 950, 1148, 1226, 1337
HpyF10VI GCNNNNNNNGC 4 cut(s) 640, 950, 1030, 1310
HpyF3I CTNAG 8 cut(s) 187, 285, 404, 667, 805, 1020, 1124, 1180
HpySE526I ACGT 3 cut(s) 530, 1060, 1483
Hsp92II CATG 3 cut(s) 154, 967, 1276
HspAI GCGC 1 cut(s) 1024
Ksp22I TGATCA 1 cut(s) 1356
Kzo9I GATC 8 cut(s) 258, 504, 801, 1176, 1266, 1296, 1356, 1396
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 917
Lsp1109I GCAGC 7 cut(s) 236, 646, 934, 962, 1132, 1210, 1321
LweI GCATC 2 cut(s) 509, 1235
MaeI CTAG 5 cut(s) 248, 638, 743, 860, 1079
MaeII ACGT 3 cut(s) 530, 1060, 1483
MaeIII GTNAC 3 cut(s) 992, 1056, 1061
MalI GATC 8 cut(s) 260, 506, 803, 1178, 1268, 1298, 1358, 1398
MboI GATC 8 cut(s) 258, 504, 801, 1176, 1266, 1296, 1356, 1396
MboII GAAGA 3 cut(s) 236, 817, 1481
MlsI TGGCCA 1 cut(s) 902
MluCI AATT 2 cut(s) 685, 1415
MluNI TGGCCA 1 cut(s) 902
MlyI GAGTC 5 cut(s) 61, 474, 722, 989, 1450
MmeI TCCRAC 2 cut(s) 371, 1310
Mox20I TGGCCA 1 cut(s) 902
MscI TGGCCA 1 cut(s) 902
MseI TTAA 3 cut(s) 696, 1326, 1486
MslI CAYNNNNRTG 3 cut(s) 23, 968, 1349
Msp20I TGGCCA 1 cut(s) 902
MspI CCGG 2 cut(s) 470, 1439
MspR9I CCNGG 1 cut(s) 470
Mva1269I GAATGC 1 cut(s) 226
MvnI CGCG 2 cut(s) 38, 1026
MwoI GCNNNNNNNGC 4 cut(s) 640, 950, 1030, 1310
NciI CCSGG 1 cut(s) 470
NdeI CATATG 1 cut(s) 1392
NdeII GATC 8 cut(s) 258, 504, 801, 1176, 1266, 1296, 1356, 1396
NlaIII CATG 3 cut(s) 154, 967, 1276
NlaIV GGNNCC 3 cut(s) 105, 366, 1255
NmeAIII GCCGAG 1 cut(s) 1006
NmuCI GTSAC 2 cut(s) 992, 1056
PciSI GCTCTTC 1 cut(s) 249
PctI GAATGC 1 cut(s) 226
PfeI GAWTC 6 cut(s) 15, 136, 628, 712, 843, 1084
PkrI GCNGC 8 cut(s) 226, 636, 946, 949, 952, 1147, 1225, 1336
PleI GAGTC 5 cut(s) 60, 473, 722, 989, 1450
PpsI GAGTC 5 cut(s) 60, 473, 722, 989, 1450
PpuMI RGGWCCY 2 cut(s) 194, 365
Psp5II RGGWCCY 2 cut(s) 194, 365
PspN4I GGNNCC 3 cut(s) 105, 366, 1255
PspPI GGNCC 4 cut(s) 194, 230, 365, 1441
PspPPI RGGWCCY 2 cut(s) 194, 365
PsrI GAACNNNNNNTAC 2 cut(s) 1145, 1177
PstI CTGCAG 3 cut(s) 952, 1150, 1339
RsaI GTAC 3 cut(s) 59, 739, 1238
RsaNI GTAC 3 cut(s) 58, 738, 1237
RseI CAYNNNNRTG 3 cut(s) 23, 968, 1349
SapI GCTCTTC 1 cut(s) 249
SaqAI TTAA 3 cut(s) 696, 1326, 1486
SatI GCNGC 8 cut(s) 225, 635, 945, 948, 951, 1146, 1224, 1335
Sau3AI GATC 8 cut(s) 258, 504, 801, 1176, 1266, 1296, 1356, 1396
Sau96I GGNCC 4 cut(s) 194, 230, 365, 1441
SchI GAGTC 5 cut(s) 61, 474, 722, 989, 1450
ScrFI CCNGG 1 cut(s) 470
SfaNI GCATC 2 cut(s) 509, 1235
SfcI CTRYAG 5 cut(s) 541, 555, 948, 1146, 1335
SinI GGWCC 4 cut(s) 194, 230, 365, 1441
SmiMI CAYNNNNRTG 3 cut(s) 23, 968, 1349
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
Sse9I AATT 2 cut(s) 685, 1415
SsiI CCGC 9 cut(s) 10, 36, 116, 302, 483, 632, 857, 944, 1026
SspMI CTAG 5 cut(s) 248, 638, 743, 860, 1079
StyD4I CCNGG 1 cut(s) 468
TaaI ACNGT 2 cut(s) 25, 1236
TaiI ACGT 3 cut(s) 533, 1063, 1486
TaqI TCGA 6 cut(s) 503, 626, 647, 731, 1265, 1399
TasI AATT 2 cut(s) 685, 1415
TatI WGTACW 1 cut(s) 737
TauI GCSGC 1 cut(s) 947
TfiI GAWTC 6 cut(s) 15, 136, 628, 712, 843, 1084
Tru1I TTAA 3 cut(s) 696, 1326, 1486
Tru9I TTAA 3 cut(s) 696, 1326, 1486
TscAI CASTG 2 cut(s) 28, 1344
TseFI GTSAC 2 cut(s) 992, 1056
TseI GCWGC 7 cut(s) 224, 634, 947, 950, 1145, 1223, 1334
Tsp45I GTSAC 2 cut(s) 992, 1056
TspDTI ATGAA 5 cut(s) 84, 195, 259, 410, 1226
TspGWI ACGGA 1 cut(s) 591
TspRI CASTG 2 cut(s) 28, 1344
VpaK11BI GGWCC 4 cut(s) 194, 230, 365, 1441
XagI CCTNNNNNAGG 1 cut(s) 1077
XapI RAATTY 2 cut(s) 685, 1415
XspI CTAG 5 cut(s) 248, 638, 743, 860, 1079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.