Rmu_co8436609.1_g000001

polyamine transporter

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8436609.1
Physical Location & Seq
Reverse (-)
75 .. 1538
1464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8436609.1_g000001.1.cds

Sequence Viewer

Length: 1464 bp
atgcagaaattgaggaccacggcaactagggaaggctccattgaaatgggagagcacaacaatcccgaatatgttgtggttagtgaagcacaatcccctagggtaaataacttcaagaaagtctcagttctgccccttgtcttcctcatcttctatgaggtatctgggggtccatttggtattgaggacagtgttcaggctgccggtccccttctagcgcttcttgggttcttggtctttccattcatttggagtgtgcctgaggccttgattactgcagagatgggtaccatgttccctgtgaatgggggttatgtggtttgggtttcttcggccctgggtccattttgggggtttcaacaaggatgggtgaaatggttaagtggagtcattgataatgctttgtacccagttctgtttttggattacttgaagtcagcaataccagctttaggcggtggacttccaagaatcgtggcagtgttagctttgacattgttcctcacttacttaaactataggggtttaaccattgtgggatgggttgctgtacttttagggattttctcaatcattccttttgtggttatgggacttgtggcaattcccaagttggagccttcaagatggttagtggtgagtctacataatgtggactggaatttgtatttgaacactctcttttggaatttgaactattgggattctataagtacacttgccggagaggtggagaacccaaagaaaactctccccaaggctcttttttatgcgttgattttggttgttgttggatatttcttcccccttttaattggtactggggctgttccgcttgatcgtgagttgtggactgatggttacttctctgatattgcaaaaattgttgggggagtttggttgagatgttggattcaaggggctgcggcgatgtcaaatatggggatgtttgtggctgaaatgagcagtgactcttttcaacttcttgggatggcagaaagagggatgttgcctgagttctttggtaagcggtctcgttatggaaccccagtcattggcattatgttctcagcttccggagtccttttgctatcttggctaagctttcaagagattgtagctgcagaaaacttcttgtactgtgttggaatgattttggagttcatagcatttataatattacgggtgaagcatccagctgcatctcggccatacaagattcctgttggaacagttggaaccatacttttgtgcattccgccaaccctgctaattggtgtagtgttggctctttctgaactcaaggttgtggttgtgagccttatagctatagtgatcggccttgtgatgcagccctgtctcacatatgttgagaggaagaggtggatgaagttctccatcagttctgatctcccagatcttcatggtgctagtcaggagagggccaactccttaatagattag

Protein Analysis

487

Amino Acids

53.68

Weight (kDa)

6.16

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1175
Acc65I GGTACC 1 cut(s) 287
AccB1I GGYRCC 1 cut(s) 287
AccB7I CCANNNNNTGG 1 cut(s) 1055
AccI GTMKAC 1 cut(s) 643
AccIII TCCGGA 1 cut(s) 1076
AciI CCGC 5 cut(s) 456, 833, 926, 1030, 1259
AcoI YGGCCR 1 cut(s) 1208
AcsI RAATTY 2 cut(s) 661, 688
AfaI GTAC 6 cut(s) 289, 407, 552, 715, 820, 1139
AfeI AGCGCT 1 cut(s) 219
AfiI CCNNNNNNNGG 4 cut(s) 305, 350, 452, 1055
AjnI CCWGG 1 cut(s) 336
AluBI AGCT 7 cut(s) 449, 488, 1073, 1104, 1121, 1199, 1328
AluI AGCT 7 cut(s) 449, 488, 1073, 1104, 1121, 1199, 1328
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 3 cut(s) 127, 1038, 1364
Aor13HI TCCGGA 1 cut(s) 1076
Aor51HI AGCGCT 1 cut(s) 219
AoxI GGCC 5 cut(s) 264, 333, 1208, 1339, 1443
ApeKI GCWGC 5 cut(s) 200, 923, 1121, 1199, 1351
ApoI RAATTY 2 cut(s) 661, 688
Asp718I GGTACC 1 cut(s) 287
AspA2I CCTAGG 1 cut(s) 98
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 6 cut(s) 15, 170, 206, 334, 341, 1443
AsuHPI GGTGA 3 cut(s) 382, 649, 1198
AvaII GGWCC 4 cut(s) 15, 170, 206, 341
AvrII CCTAGG 1 cut(s) 98
AxyI CCTNAGG 1 cut(s) 261
BanI GGYRCC 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 5 cut(s) 187, 910, 1108, 1186, 1363
BccI CCATC 7 cut(s) 277, 360, 534, 621, 851, 985, 1406
BceAI ACGGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 338
BcoDI GTCTC 3 cut(s) 127, 1038, 1364
BfaI CTAG 4 cut(s) 27, 99, 215, 1431
BfmI CTRYAG 4 cut(s) 276, 517, 1122, 1329
BfoI RGCGCY 1 cut(s) 221
BglII AGATCT 1 cut(s) 1417
BisI GCNGC 6 cut(s) 201, 924, 927, 1122, 1200, 1352
BlnI CCTAGG 1 cut(s) 98
BlpI GCTNAGC 1 cut(s) 1100
BlsI GCNGC 6 cut(s) 202, 925, 928, 1123, 1201, 1353
Bme1390I CCNGG 1 cut(s) 338
Bme18I GGWCC 4 cut(s) 15, 170, 206, 341
BmgT120I GGNCC 6 cut(s) 15, 170, 206, 334, 341, 1443
BmiI GGNNCC 8 cut(s) 37, 171, 208, 289, 342, 618, 1045, 1240
BmrFI CCNGG 1 cut(s) 338
BmrI ACTGGG 3 cut(s) 404, 831, 1043
BmsI GCATC 3 cut(s) 1201, 1211, 1338
BmuI ACTGGG 3 cut(s) 404, 831, 1043
BpiI GAAGAC 1 cut(s) 133
Bpu1102I GCTNAGC 1 cut(s) 1100
BpuEI CTTGAG 1 cut(s) 1286
BsaI GGTCTC 1 cut(s) 1038
BsaJI CCNNGG 5 cut(s) 18, 98, 336, 337, 756
BsaWI WCCGGW 1 cut(s) 1076
Bsc4I CCNNNNNNNGG 4 cut(s) 305, 350, 452, 1055
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 4 cut(s) 410, 662, 826, 1049
Bse21I CCTNAGG 1 cut(s) 261
BseAI TCCGGA 1 cut(s) 1076
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 5 cut(s) 18, 98, 336, 337, 756
BseGI GGATG 7 cut(s) 371, 545, 951, 996, 1011, 1192, 1392
BseLI CCNNNNNNNGG 4 cut(s) 305, 350, 452, 1055
BseMII CTCAG 4 cut(s) 138, 252, 1005, 1083
BseNI ACTGG 4 cut(s) 410, 662, 826, 1049
BseXI GCAGC 5 cut(s) 187, 910, 1108, 1186, 1363
BshFI GGCC 5 cut(s) 266, 335, 1210, 1341, 1445
BshNI GGYRCC 1 cut(s) 287
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 3 cut(s) 204, 723, 1077
BslFI GGGAC 2 cut(s) 192, 606
BslI CCNNNNNNNGG 4 cut(s) 305, 350, 452, 1055
BsmAI GTCTC 3 cut(s) 127, 1038, 1364
BsmFI GGGAC 2 cut(s) 192, 606
BsmI GAATGC 1 cut(s) 1254
BsnI GGCC 5 cut(s) 266, 335, 1210, 1341, 1445
Bso31I GGTCTC 1 cut(s) 1038
Bsp1286I GDGCHC 1 cut(s) 57
Bsp13I TCCGGA 1 cut(s) 1076
Bsp143I GATC 4 cut(s) 838, 1335, 1408, 1417
Bsp1720I GCTNAGC 1 cut(s) 1100
BspACI CCGC 5 cut(s) 456, 833, 926, 1030, 1259
BspANI GGCC 5 cut(s) 266, 335, 1210, 1341, 1445
BspCNI CTCAG 4 cut(s) 137, 253, 1006, 1082
BspEI TCCGGA 1 cut(s) 1076
BspLI GGNNCC 8 cut(s) 37, 171, 208, 289, 342, 618, 1045, 1240
BspMAI CTGCAG 2 cut(s) 280, 1126
BspT107I GGYRCC 1 cut(s) 287
BspTNI GGTCTC 1 cut(s) 1038
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 4 cut(s) 410, 662, 826, 1049
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 5 cut(s) 18, 98, 336, 337, 756
BssMI GATC 4 cut(s) 838, 1335, 1408, 1417
BssT1I CCWWGG 2 cut(s) 98, 756
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 3 cut(s) 191, 1142, 1234
Bst6I CTCTTC 1 cut(s) 1373
BstDEI CTNAG 5 cut(s) 124, 261, 1014, 1069, 1100
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 7 cut(s) 371, 545, 951, 996, 1011, 1192, 1392
BstH2I RGCGCY 1 cut(s) 221
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 4 cut(s) 841, 1338, 1411, 1420
BstMAI GTCTC 3 cut(s) 127, 1038, 1364
BstMBI GATC 4 cut(s) 838, 1335, 1408, 1417
BstMWI GCNNNNNNNGC 4 cut(s) 446, 485, 1096, 1267
BstNI CCWGG 1 cut(s) 338
BstSCI CCNGG 1 cut(s) 336
BstSFI CTRYAG 4 cut(s) 276, 517, 1122, 1329
BstV1I GCAGC 5 cut(s) 187, 910, 1108, 1186, 1363
BstV2I GAAGAC 1 cut(s) 133
BstX2I RGATCY 1 cut(s) 1417
BstXI CCANNNNNNTGG 2 cut(s) 46, 249
BstYI RGATCY 1 cut(s) 1417
Bsu36I CCTNAGG 1 cut(s) 261
BsuRI GGCC 5 cut(s) 266, 335, 1210, 1341, 1445
BtgI CCRYGG 1 cut(s) 18
BtgZI GCGATG 1 cut(s) 944
BtsCI GGATG 7 cut(s) 371, 545, 951, 996, 1011, 1192, 1392
BtsI GCAGTG 2 cut(s) 486, 973
BtsIMutI CAGTG 3 cut(s) 196, 486, 973
CfoI GCGC 1 cut(s) 220
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 6 cut(s) 15, 170, 206, 334, 341, 1443
Csp6I GTAC 6 cut(s) 288, 406, 551, 714, 819, 1138
CspCI CAANNNNNGTGG 2 cut(s) 456, 491
CviAII CATG 2 cut(s) 292, 1424
CviQI GTAC 6 cut(s) 288, 406, 551, 714, 819, 1138
DdeI CTNAG 5 cut(s) 124, 261, 1014, 1069, 1100
DpnI GATC 4 cut(s) 840, 1337, 1410, 1419
DpnII GATC 4 cut(s) 838, 1335, 1408, 1417
EaeI YGGCCR 1 cut(s) 1208
Eam1104I CTCTTC 1 cut(s) 1373
EarI CTCTTC 1 cut(s) 1373
EciI GGCGGA 1 cut(s) 1248
Eco130I CCWWGG 2 cut(s) 98, 756
Eco147I AGGCCT 1 cut(s) 266
Eco31I GGTCTC 1 cut(s) 1038
Eco47I GGWCC 4 cut(s) 15, 170, 206, 341
Eco47III AGCGCT 1 cut(s) 219
Eco81I CCTNAGG 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 336
EcoT14I CCWWGG 2 cut(s) 98, 756
ErhI CCWWGG 2 cut(s) 98, 756
FaeI CATG 2 cut(s) 295, 1427
FaqI GGGAC 2 cut(s) 192, 606
FatI CATG 2 cut(s) 291, 1423
FauNDI CATATG 1 cut(s) 1366
FblI GTMKAC 1 cut(s) 643
Fnu4HI GCNGC 6 cut(s) 201, 924, 927, 1122, 1200, 1352
FokI GGATG 7 cut(s) 378, 552, 958, 1003, 1018, 1179, 1399
Fsp4HI GCNGC 6 cut(s) 201, 924, 927, 1122, 1200, 1352
FspBI CTAG 4 cut(s) 27, 99, 215, 1431
GlaI GCGC 1 cut(s) 219
GluI GCNGC 6 cut(s) 201, 924, 927, 1122, 1200, 1352
HaeII RGCGCY 1 cut(s) 221
HaeIII GGCC 5 cut(s) 266, 335, 1210, 1341, 1445
HapII CCGG 3 cut(s) 204, 723, 1077
HhaI GCGC 1 cut(s) 220
Hin1II CATG 2 cut(s) 295, 1427
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HindIII AAGCTT 1 cut(s) 1102
HinfI GANTC 8 cut(s) 387, 471, 640, 704, 913, 971, 1080, 1219
HpaII CCGG 3 cut(s) 204, 723, 1077
HphI GGTGA 3 cut(s) 382, 649, 1198
Hpy166II GTNNAC 5 cut(s) 461, 644, 655, 716, 852
Hpy188I TCNGA 3 cut(s) 871, 1297, 1408
Hpy188III TCNNGA 7 cut(s) 65, 115, 624, 842, 1077, 1109, 1436
Hpy8I GTNNAC 5 cut(s) 461, 644, 655, 716, 852
HpyAV CCTTC 3 cut(s) 26, 221, 630
HpyCH4III ACNGT 3 cut(s) 191, 1142, 1234
HpyCH4V TGCA 7 cut(s) 4, 278, 878, 1124, 1202, 1254, 1351
HpyF10VI GCNNNNNNNGC 4 cut(s) 446, 485, 1096, 1267
HpyF3I CTNAG 5 cut(s) 124, 261, 1014, 1069, 1100
Hsp92II CATG 2 cut(s) 295, 1427
HspAI GCGC 1 cut(s) 218
Kpn2I TCCGGA 1 cut(s) 1076
KpnI GGTACC 1 cut(s) 291
Kzo9I GATC 4 cut(s) 838, 1335, 1408, 1417
LmnI GCTCC 2 cut(s) 41, 616
Lsp1109I GCAGC 5 cut(s) 187, 910, 1108, 1186, 1363
LweI GCATC 3 cut(s) 1201, 1211, 1338
MaeI CTAG 4 cut(s) 27, 99, 215, 1431
MaeIII GTNAC 2 cut(s) 860, 968
MalI GATC 4 cut(s) 840, 1337, 1410, 1419
MboI GATC 4 cut(s) 838, 1335, 1408, 1417
MboII GAAGA 6 cut(s) 133, 142, 321, 793, 1390, 1412
MflI RGATCY 1 cut(s) 1417
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 7 cut(s) 8, 603, 661, 688, 813, 882, 1272
MlyI GAGTC 4 cut(s) 396, 649, 965, 1089
MmeI TCCRAC 6 cut(s) 594, 772, 890, 1126, 1207, 1216
MroI TCCGGA 1 cut(s) 1076
MseI TTAA 5 cut(s) 380, 512, 527, 812, 1454
MslI CAYNNNNRTG 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 1199
MspI CCGG 3 cut(s) 204, 723, 1077
MspR9I CCNGG 1 cut(s) 338
Mva1269I GAATGC 1 cut(s) 1254
MvaI CCWGG 1 cut(s) 338
MwoI GCNNNNNNNGC 4 cut(s) 446, 485, 1096, 1267
NdeI CATATG 1 cut(s) 1366
NdeII GATC 4 cut(s) 838, 1335, 1408, 1417
NlaIII CATG 2 cut(s) 295, 1427
NlaIV GGNNCC 8 cut(s) 37, 171, 208, 289, 342, 618, 1045, 1240
NmeAIII GCCGAG 1 cut(s) 1186
NmuCI GTSAC 1 cut(s) 968
PasI CCCWGGG 1 cut(s) 337
PceI AGGCCT 1 cut(s) 266
PctI GAATGC 1 cut(s) 1254
PfeI GAWTC 4 cut(s) 471, 704, 913, 1219
PflMI CCANNNNNTGG 1 cut(s) 1055
PkrI GCNGC 6 cut(s) 202, 925, 928, 1123, 1201, 1353
PleI GAGTC 4 cut(s) 395, 648, 965, 1088
PpsI GAGTC 4 cut(s) 395, 648, 965, 1088
PsiI TTATAA 1 cut(s) 1175
Psp6I CCWGG 1 cut(s) 336
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 8 cut(s) 37, 171, 208, 289, 342, 618, 1045, 1240
PspPI GGNCC 6 cut(s) 15, 170, 206, 334, 341, 1443
PstI CTGCAG 2 cut(s) 280, 1126
PsuI RGATCY 1 cut(s) 1417
PvuII CAGCTG 1 cut(s) 1199
RsaI GTAC 6 cut(s) 289, 407, 552, 715, 820, 1139
RsaNI GTAC 6 cut(s) 288, 406, 551, 714, 819, 1138
RseI CAYNNNNRTG 1 cut(s) 44
SaqAI TTAA 5 cut(s) 380, 512, 527, 812, 1454
SatI GCNGC 6 cut(s) 201, 924, 927, 1122, 1200, 1352
Sau3AI GATC 4 cut(s) 838, 1335, 1408, 1417
Sau96I GGNCC 6 cut(s) 15, 170, 206, 334, 341, 1443
SchI GAGTC 4 cut(s) 396, 649, 965, 1089
ScrFI CCNGG 1 cut(s) 338
SduI GDGCHC 1 cut(s) 57
SfaNI GCATC 3 cut(s) 1201, 1211, 1338
SfcI CTRYAG 4 cut(s) 276, 517, 1122, 1329
SinI GGWCC 4 cut(s) 15, 170, 206, 341
SmiMI CAYNNNNRTG 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 1301
SmoI CTYRAG 1 cut(s) 1301
Sse9I AATT 7 cut(s) 8, 603, 661, 688, 813, 882, 1272
SseBI AGGCCT 1 cut(s) 266
SsiI CCGC 5 cut(s) 456, 833, 926, 1030, 1259
SspI AATATT 1 cut(s) 1179
SspMI CTAG 4 cut(s) 27, 99, 215, 1431
StuI AGGCCT 1 cut(s) 266
StyD4I CCNGG 1 cut(s) 336
StyI CCWWGG 2 cut(s) 98, 756
TaaI ACNGT 3 cut(s) 191, 1142, 1234
TasI AATT 7 cut(s) 8, 603, 661, 688, 813, 882, 1272
TatI WGTACW 3 cut(s) 550, 713, 1137
TauI GCSGC 1 cut(s) 929
TfiI GAWTC 4 cut(s) 471, 704, 913, 1219
Tru1I TTAA 5 cut(s) 380, 512, 527, 812, 1454
Tru9I TTAA 5 cut(s) 380, 512, 527, 812, 1454
TscAI CASTG 3 cut(s) 196, 486, 973
TseFI GTSAC 1 cut(s) 968
TseI GCWGC 5 cut(s) 200, 923, 1121, 1199, 1351
Tsp45I GTSAC 1 cut(s) 968
TspDTI ATGAA 4 cut(s) 235, 1153, 1403, 1412
TspRI CASTG 3 cut(s) 196, 486, 973
Van91I CCANNNNNTGG 1 cut(s) 1055
VpaK11BI GGWCC 4 cut(s) 15, 170, 206, 341
XapI RAATTY 2 cut(s) 661, 688
XmaJI CCTAGG 1 cut(s) 98
XmiI GTMKAC 1 cut(s) 643
XspI CTAG 4 cut(s) 27, 99, 215, 1431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.