RchiOBHm_Chr7g0243451

polyamine transporter

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
69693219 .. 69694655
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21817

Sequence Viewer

Length: 1437 bp
ATGCAGAAATTGAGGACCGCGGCAACTAGGGAAGGCTCCGTTGAAATGGGAGAGCACAACAATCCCGAATGTGTTGCAGTTAGTGAAGCACAATCCCCTAGGGTAAATAACTTCAAGAAAGTCTCAGTTCTGCCCCTTGTCTTCCTCATCTTCTATGAGGTATCTGGGGGTCCATTTGGTATGGAGGACAGTGTTCAGGCTGCTGGTCCCCTTCTAGCGCTTCTCGGGTTCTTGGTCTTTCCATTCATTTGGAGCGTTCCTGAGGCCTTGATTACTGCAGAGATGGGTACCATGTTCCCTGTGAATGGGGGTTATGTGGTTTGGGTTTCTTCGGCCCTGGGTCCATTTTGGGGGTTTCAACAAGGATGGTTGAAATGGTTAAGTGGAGTCATTGATAATGCTTTGTACCCAGTTCTGTTTTTGGACTACTTGAAGTCAGCAATACCAGCTTTAGGCGGTGGACTTCCAAGAATCGTGGCAGCGTTAGCTCTGACATTGTTCCTCACTTACTTAAACTATCGGGGTTTAACCATTGTGGGATGGGTTGCTGTACTTTTAGGGATTTTCTCAATCATTCCTTTTGTGGTTATGGGACTTGTGGCAATTCCCAAGTTGGAGCCTTCAAGATGGTTAGTGGTGAGTCTACATAATGTGGACTGGAATTTGTATTTGAACACTCTCTTTTGGAATTTGAACTATTGGGATTCTATAAGTACACTTGCCGGAGAGGTGGAGAACCAAAAGAAAACTCTCCCCAAGGCTCTTTTTTATGCGTTCATTTTGGTTGTTGTTGGATATTTCTTCCCCCTTTTAATTGGTACTGGGGCTGTTCCACTTGATCGTGAGTTGTGGACTGATGGTTACTTCTCTGATATTGCAAAAATTGTTGGGGGAGTTTGGTTGAGATGTTGGATCCAAGGGGCTGCGGCGATGTCAAATATGGGGATGTTTGTGGCTGAAATGAGCAGCGACTCTTTTCAACTTCTTGGGATGGCAGAAAGAGGGATGTTGCCTGAGTTCTTTAGCAAGCGGTCTTGTTATGGAACCCCAGTCATCGGCATTATGTTCTCAGCTTCCGGAGTCCTTTTGCTATCTTGGCTAAGCTTTCAAGAGATTGTAGCTGCAGAAAACTTCTTGTACTGTGTTGGAATGATTTTGGAGTTCATAGCATTTATACTATTACGGGTGAAGCATCCAGCTGCATCGCGGCCATTCAAGATTCCTGTTGGAACAGTTGGAACCATTTTTTTGTGCATTCCGCCTACCCTGCTAATTGGTGTTTTGTTTGCTCTTTCTGAACTCAAGGTTGTGGTTGTGAGTCTTATAGCTATAGTGATCGGCCTTGTGATGCAGCCCTGTCTCACATATGTTGAGAGGAAGAGGTGGATGAAGTTCTCCATCAGTTCTGAACGATCTCCCAGATCTTCATGGTGCTAG

Protein Analysis

478

Amino Acids

52.81

Weight (kDa)

7.53

Isoelectric Point (pI)

38.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 44 - 425 1.2e-39 Amino acid permease
AA_permease PF00324 60 - 428 8.2e-18 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 287
AccB1I GGYRCC 1 cut(s) 287
AccI GTMKAC 1 cut(s) 643
AccII CGCG 2 cut(s) 20, 1207
AccIII TCCGGA 1 cut(s) 1076
AciI CCGC 7 cut(s) 18, 20, 456, 926, 1030, 1207, 1259
AclWI GGATC 2 cut(s) 907, 920
AcoI YGGCCR 1 cut(s) 1208
AcsI RAATTY 2 cut(s) 661, 688
AfaI GTAC 6 cut(s) 289, 407, 552, 715, 820, 1139
AfeI AGCGCT 1 cut(s) 219
AfiI CCNNNNNNNGG 4 cut(s) 305, 350, 452, 1055
AjnI CCWGG 1 cut(s) 336
AluBI AGCT 7 cut(s) 449, 488, 1073, 1104, 1121, 1199, 1328
AluI AGCT 7 cut(s) 449, 488, 1073, 1104, 1121, 1199, 1328
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 2 cut(s) 127, 1364
AlwI GGATC 2 cut(s) 907, 920
Ama87I CYCGRG 1 cut(s) 224
Aor13HI TCCGGA 1 cut(s) 1076
Aor51HI AGCGCT 1 cut(s) 219
AoxI GGCC 4 cut(s) 264, 333, 1208, 1339
ApeKI GCWGC 7 cut(s) 200, 479, 923, 966, 1121, 1199, 1351
ApoI RAATTY 2 cut(s) 661, 688
Asp718I GGTACC 1 cut(s) 287
AspA2I CCTAGG 1 cut(s) 98
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 5 cut(s) 15, 170, 206, 334, 341
AsuHPI GGTGA 2 cut(s) 649, 1198
AvaI CYCGRG 1 cut(s) 224
AvaII GGWCC 4 cut(s) 15, 170, 206, 341
AvrII CCTAGG 1 cut(s) 98
AxyI CCTNAGG 1 cut(s) 261
BamHI GGATCC 1 cut(s) 912
BanI GGYRCC 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 7 cut(s) 187, 491, 910, 978, 1108, 1186, 1363
BccI CCATC 7 cut(s) 277, 360, 534, 621, 851, 985, 1406
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BciT130I CCWGG 1 cut(s) 338
BcoDI GTCTC 2 cut(s) 127, 1364
BfaI CTAG 4 cut(s) 27, 99, 215, 1435
BfmI CTRYAG 3 cut(s) 276, 1122, 1329
BfoI RGCGCY 1 cut(s) 221
BglII AGATCT 1 cut(s) 1421
BlnI CCTAGG 1 cut(s) 98
BlpI GCTNAGC 1 cut(s) 1100
Bme1390I CCNGG 1 cut(s) 338
Bme18I GGWCC 4 cut(s) 15, 170, 206, 341
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 5 cut(s) 15, 170, 206, 334, 341
BmiI GGNNCC 9 cut(s) 37, 171, 208, 289, 342, 618, 914, 1045, 1240
BmrFI CCNGG 1 cut(s) 338
BmrI ACTGGG 3 cut(s) 404, 831, 1043
BmsI GCATC 3 cut(s) 1201, 1211, 1338
BmuI ACTGGG 3 cut(s) 404, 831, 1043
BpiI GAAGAC 1 cut(s) 133
Bpu1102I GCTNAGC 1 cut(s) 1100
BpuEI CTTGAG 1 cut(s) 1286
BsaJI CCNNGG 6 cut(s) 18, 98, 336, 337, 756, 916
BsaWI WCCGGW 1 cut(s) 1076
Bsc4I CCNNNNNNNGG 4 cut(s) 305, 350, 452, 1055
Bse1I ACTGG 4 cut(s) 410, 662, 826, 1049
Bse21I CCTNAGG 1 cut(s) 261
BseAI TCCGGA 1 cut(s) 1076
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 6 cut(s) 18, 98, 336, 337, 756, 916
BseGI GGATG 7 cut(s) 371, 545, 951, 996, 1011, 1192, 1392
BseLI CCNNNNNNNGG 4 cut(s) 305, 350, 452, 1055
BseMII CTCAG 4 cut(s) 138, 252, 1005, 1083
BseNI ACTGG 4 cut(s) 410, 662, 826, 1049
BseXI GCAGC 7 cut(s) 187, 491, 910, 978, 1108, 1186, 1363
Bsh1236I CGCG 2 cut(s) 20, 1207
BshFI GGCC 4 cut(s) 266, 335, 1210, 1341
BshNI GGYRCC 1 cut(s) 287
BsiHKAI GWGCWC 1 cut(s) 57
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 2 cut(s) 723, 1077
BslFI GGGAC 2 cut(s) 192, 606
BslI CCNNNNNNNGG 4 cut(s) 305, 350, 452, 1055
BsmAI GTCTC 2 cut(s) 127, 1364
BsmFI GGGAC 2 cut(s) 192, 606
BsmI GAATGC 1 cut(s) 1254
BsnI GGCC 4 cut(s) 266, 335, 1210, 1341
BsoBI CYCGRG 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 57
Bsp13I TCCGGA 1 cut(s) 1076
Bsp143I GATC 5 cut(s) 838, 912, 1335, 1412, 1421
Bsp1720I GCTNAGC 1 cut(s) 1100
BspACI CCGC 7 cut(s) 18, 20, 456, 926, 1030, 1207, 1259
BspANI GGCC 4 cut(s) 266, 335, 1210, 1341
BspCNI CTCAG 4 cut(s) 137, 253, 1006, 1082
BspEI TCCGGA 1 cut(s) 1076
BspFNI CGCG 2 cut(s) 20, 1207
BspLI GGNNCC 9 cut(s) 37, 171, 208, 289, 342, 618, 914, 1045, 1240
BspMAI CTGCAG 2 cut(s) 280, 1126
BspPI GGATC 2 cut(s) 907, 920
BspT107I GGYRCC 1 cut(s) 287
BsrI ACTGG 4 cut(s) 410, 662, 826, 1049
BssECI CCNNGG 6 cut(s) 18, 98, 336, 337, 756, 916
BssMI GATC 5 cut(s) 838, 912, 1335, 1412, 1421
BssT1I CCWWGG 3 cut(s) 98, 756, 916
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 3 cut(s) 191, 1142, 1234
Bst6I CTCTTC 1 cut(s) 1373
BstC8I GCNNGC 1 cut(s) 1028
BstDEI CTNAG 5 cut(s) 124, 261, 1014, 1069, 1100
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 7 cut(s) 371, 545, 951, 996, 1011, 1192, 1392
BstFNI CGCG 2 cut(s) 20, 1207
BstH2I RGCGCY 1 cut(s) 221
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 5 cut(s) 841, 915, 1338, 1415, 1424
BstMAI GTCTC 2 cut(s) 127, 1364
BstMBI GATC 5 cut(s) 838, 912, 1335, 1412, 1421
BstMWI GCNNNNNNNGC 4 cut(s) 446, 485, 1096, 1267
BstNI CCWGG 1 cut(s) 338
BstSCI CCNGG 1 cut(s) 336
BstSFI CTRYAG 3 cut(s) 276, 1122, 1329
BstUI CGCG 2 cut(s) 20, 1207
BstV1I GCAGC 7 cut(s) 187, 491, 910, 978, 1108, 1186, 1363
BstV2I GAAGAC 1 cut(s) 133
BstX2I RGATCY 2 cut(s) 912, 1421
BstXI CCANNNNNNTGG 1 cut(s) 249
BstYI RGATCY 2 cut(s) 912, 1421
Bsu36I CCTNAGG 1 cut(s) 261
BsuRI GGCC 4 cut(s) 266, 335, 1210, 1341
BtgI CCRYGG 1 cut(s) 18
BtgZI GCGATG 2 cut(s) 944, 1188
BtsCI GGATG 7 cut(s) 371, 545, 951, 996, 1011, 1192, 1392
BtsIMutI CAGTG 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 1028
CfoI GCGC 1 cut(s) 220
Cfr13I GGNCC 5 cut(s) 15, 170, 206, 334, 341
Cfr42I CCGCGG 1 cut(s) 21
Csp6I GTAC 6 cut(s) 288, 406, 551, 714, 819, 1138
CspCI CAANNNNNGTGG 2 cut(s) 456, 491
CviAII CATG 2 cut(s) 292, 1428
CviQI GTAC 6 cut(s) 288, 406, 551, 714, 819, 1138
DdeI CTNAG 5 cut(s) 124, 261, 1014, 1069, 1100
DpnI GATC 5 cut(s) 840, 914, 1337, 1414, 1423
DpnII GATC 5 cut(s) 838, 912, 1335, 1412, 1421
EaeI YGGCCR 1 cut(s) 1208
Eam1104I CTCTTC 1 cut(s) 1373
EarI CTCTTC 1 cut(s) 1373
EciI GGCGGA 1 cut(s) 1248
Eco130I CCWWGG 3 cut(s) 98, 756, 916
Eco147I AGGCCT 1 cut(s) 266
Eco47I GGWCC 4 cut(s) 15, 170, 206, 341
Eco47III AGCGCT 1 cut(s) 219
Eco81I CCTNAGG 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 336
EcoT14I CCWWGG 3 cut(s) 98, 756, 916
ErhI CCWWGG 3 cut(s) 98, 756, 916
FaeI CATG 2 cut(s) 295, 1431
FaqI GGGAC 2 cut(s) 192, 606
FatI CATG 2 cut(s) 291, 1427
FauNDI CATATG 1 cut(s) 1366
FblI GTMKAC 1 cut(s) 643
FokI GGATG 7 cut(s) 378, 552, 958, 1003, 1018, 1179, 1399
FspBI CTAG 4 cut(s) 27, 99, 215, 1435
GlaI GCGC 1 cut(s) 219
HaeII RGCGCY 1 cut(s) 221
HaeIII GGCC 4 cut(s) 266, 335, 1210, 1341
HapII CCGG 2 cut(s) 723, 1077
HhaI GCGC 1 cut(s) 220
Hin1II CATG 2 cut(s) 295, 1431
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HindIII AAGCTT 1 cut(s) 1102
HinfI GANTC 8 cut(s) 387, 471, 640, 704, 971, 1080, 1219, 1318
HpaII CCGG 2 cut(s) 723, 1077
HphI GGTGA 2 cut(s) 649, 1198
Hpy166II GTNNAC 5 cut(s) 461, 644, 655, 716, 852
Hpy188I TCNGA 4 cut(s) 492, 871, 1297, 1408
Hpy188III TCNNGA 8 cut(s) 65, 115, 260, 624, 842, 1077, 1109, 1216
Hpy8I GTNNAC 5 cut(s) 461, 644, 655, 716, 852
HpyAV CCTTC 3 cut(s) 26, 221, 630
HpyCH4III ACNGT 3 cut(s) 191, 1142, 1234
HpyCH4V TGCA 8 cut(s) 4, 77, 278, 878, 1124, 1202, 1254, 1351
HpyF10VI GCNNNNNNNGC 4 cut(s) 446, 485, 1096, 1267
HpyF3I CTNAG 5 cut(s) 124, 261, 1014, 1069, 1100
Hsp92II CATG 2 cut(s) 295, 1431
HspAI GCGC 1 cut(s) 218
Kpn2I TCCGGA 1 cut(s) 1076
KpnI GGTACC 1 cut(s) 291
KspI CCGCGG 1 cut(s) 21
Kzo9I GATC 5 cut(s) 838, 912, 1335, 1412, 1421
LmnI GCTCC 3 cut(s) 41, 252, 616
Lsp1109I GCAGC 7 cut(s) 187, 491, 910, 978, 1108, 1186, 1363
LweI GCATC 3 cut(s) 1201, 1211, 1338
MaeI CTAG 4 cut(s) 27, 99, 215, 1435
MaeIII GTNAC 1 cut(s) 860
MalI GATC 5 cut(s) 840, 914, 1337, 1414, 1423
MboI GATC 5 cut(s) 838, 912, 1335, 1412, 1421
MboII GAAGA 6 cut(s) 133, 142, 321, 793, 1390, 1416
MflI RGATCY 2 cut(s) 912, 1421
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 7 cut(s) 8, 603, 661, 688, 813, 882, 1272
MlyI GAGTC 5 cut(s) 396, 649, 965, 1089, 1327
MmeI TCCRAC 6 cut(s) 594, 772, 890, 1126, 1207, 1216
MroI TCCGGA 1 cut(s) 1076
MseI TTAA 4 cut(s) 380, 512, 527, 812
MspA1I CMGCKG 2 cut(s) 20, 1199
MspI CCGG 2 cut(s) 723, 1077
MspR9I CCNGG 1 cut(s) 338
Mva1269I GAATGC 1 cut(s) 1254
MvaI CCWGG 1 cut(s) 338
MvnI CGCG 2 cut(s) 20, 1207
MwoI GCNNNNNNNGC 4 cut(s) 446, 485, 1096, 1267
NdeI CATATG 1 cut(s) 1366
NdeII GATC 5 cut(s) 838, 912, 1335, 1412, 1421
NlaIII CATG 2 cut(s) 295, 1431
NlaIV GGNNCC 9 cut(s) 37, 171, 208, 289, 342, 618, 914, 1045, 1240
PasI CCCWGGG 1 cut(s) 337
PceI AGGCCT 1 cut(s) 266
PctI GAATGC 1 cut(s) 1254
PfeI GAWTC 3 cut(s) 471, 704, 1219
PleI GAGTC 5 cut(s) 395, 648, 965, 1088, 1326
PpsI GAGTC 5 cut(s) 395, 648, 965, 1088, 1326
Psp6I CCWGG 1 cut(s) 336
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 9 cut(s) 37, 171, 208, 289, 342, 618, 914, 1045, 1240
PspPI GGNCC 5 cut(s) 15, 170, 206, 334, 341
PstI CTGCAG 2 cut(s) 280, 1126
PsuI RGATCY 2 cut(s) 912, 1421
PvuII CAGCTG 1 cut(s) 1199
RsaI GTAC 6 cut(s) 289, 407, 552, 715, 820, 1139
RsaNI GTAC 6 cut(s) 288, 406, 551, 714, 819, 1138
SacII CCGCGG 1 cut(s) 21
SaqAI TTAA 4 cut(s) 380, 512, 527, 812
Sau3AI GATC 5 cut(s) 838, 912, 1335, 1412, 1421
Sau96I GGNCC 5 cut(s) 15, 170, 206, 334, 341
SchI GAGTC 5 cut(s) 396, 649, 965, 1089, 1327
ScrFI CCNGG 1 cut(s) 338
SduI GDGCHC 1 cut(s) 57
SfaNI GCATC 3 cut(s) 1201, 1211, 1338
SfcI CTRYAG 3 cut(s) 276, 1122, 1329
Sfr303I CCGCGG 1 cut(s) 21
SgrBI CCGCGG 1 cut(s) 21
SinI GGWCC 4 cut(s) 15, 170, 206, 341
SmlI CTYRAG 1 cut(s) 1301
SmoI CTYRAG 1 cut(s) 1301
Sse9I AATT 7 cut(s) 8, 603, 661, 688, 813, 882, 1272
SseBI AGGCCT 1 cut(s) 266
SsiI CCGC 7 cut(s) 18, 20, 456, 926, 1030, 1207, 1259
SspMI CTAG 4 cut(s) 27, 99, 215, 1435
StuI AGGCCT 1 cut(s) 266
StyD4I CCNGG 1 cut(s) 336
StyI CCWWGG 3 cut(s) 98, 756, 916
TaaI ACNGT 3 cut(s) 191, 1142, 1234
TasI AATT 7 cut(s) 8, 603, 661, 688, 813, 882, 1272
TatI WGTACW 3 cut(s) 550, 713, 1137
TauI GCSGC 3 cut(s) 23, 929, 1210
TfiI GAWTC 3 cut(s) 471, 704, 1219
Tru1I TTAA 4 cut(s) 380, 512, 527, 812
Tru9I TTAA 4 cut(s) 380, 512, 527, 812
TscAI CASTG 1 cut(s) 196
TseI GCWGC 7 cut(s) 200, 479, 923, 966, 1121, 1199, 1351
TspDTI ATGAA 5 cut(s) 235, 766, 1153, 1403, 1416
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 1 cut(s) 196
VpaK11BI GGWCC 4 cut(s) 15, 170, 206, 341
XapI RAATTY 2 cut(s) 661, 688
XmaJI CCTAGG 1 cut(s) 98
XmiI GTMKAC 1 cut(s) 643
XspI CTAG 4 cut(s) 27, 99, 215, 1435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.