Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008539.1

Orthogroup ID

OG0001720

Physical Location & Seq

Genomic Coordinates Reverse (-)

339 .. 1673

Gene Structure 1335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008539.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ctgccccttgtcttcctcatcttctatgaggtatctgggggtccatttggtattgaggacagtgttcaggctgccggtccccttctagcgcttcttgggttcttggtctttccattcatttggagtgtgcctgaggccttgattactgcagagatgggtaccatgttccctgtgaatgggggttatgtggtttgggtttcttcggccctgggtccattttgggggtttcaacaaggatgggtgaaatggttaagtggagtcattgataatgctttgtacccagttctgtttttggattacttgaagtcagcaataccagctttaggcggtggacttccaagaatcgtggcagtgttagctttgacattgttcctcacttacttaaactataggggtttaaccattgtgggatgggttgctgtacttttagggattttctcaatcattccttttgtggttatgggacttgtggcaattcccaagttggagccttcaagatggttagtggtgagtctacataatgtggactggaatttgtatttgaacactctcttttggaatttgaactattgggattctataagtacacttgccggagaggtggagaacccaaagaaaactctccccaaggctcttttttatgcgttgattttggttgttgttggatatttcttcccccttttaattggtactggggctgttccgcttgatcgtgagttgtggactgatggttacttctctgatattgcaaaaattgttgggggagtttggttgagatgttggattcaaggggctgcggcgatgtcaaatatggggatgtttgtggctgaaatgagcagtgactcttttcaacttcttgggatggcagaaagagggatgttgcctgagttctttggtaagcggtctcgttatggaaccccagtcattggcattatgttctcagcttccggagtccttttgctatcttggctaagctttcaagagattgtagctgcagaaaacttcttgtactgtgttggaatgattttggagttcatagcatttataatattacgggtgaagcatccagctgcatctcggccatacaagattcctgttggaacagttggaaccatacttttgtgcattccgccaaccctgctaattggtgtagtgttggctctttctgaactcaaggttgtggttgtgagccttatagctatagtgatcggccttgtgatgcagccctgtctcacatatgttgagaggaagaggtggatgaagttctccatcagttctgatctcccagatcttcatggtgctagtcaggagagggccaactccttaatagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006082 GO:0006520 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0006928 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009987 GO:0015075 GO:0015171 GO:0015179 GO:0015203 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015846 GO:0015849 GO:0016020 GO:0016021 GO:0016043 GO:0016477 GO:0019752 GO:0022607 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0048870 GO:0050900 GO:0051179 GO:0051234 GO:0051674 GO:0055085 GO:0065003 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0098656 GO:1901564 GO:1902047 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

444

Amino Acids

48.83

Weight (kDa)

5.74

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31820 AT1G31830 AT1G31830 AT5G05630
fragaria_vesca	FvH4_2g15680 FvH4_2g15680 FvH4_4g35270 FvH4_5g24050 FvH4_5g24050
malus_domestica	MD06G1016700.v1.1 MD17G1241900.v1.1
prunus_persica	Prupe.5G019700_v2.0.a1 Prupe.8G169300_v2.0.a1 Prupe.8G169300_v2.0.a1 Prupe.8G169300_v2.0.a1 Prupe.8G169300_v2.0.a1 Prupe.8G169300_v2.0.a1
pyrus_communis	pycom05g11950 pycom06g01360 pycom10g10980
rosa_chinensis	RchiOBHm_Chr6g0278981 RchiOBHm_Chr7g0213541 RchiOBHm_Chr7g0243451
rosa_laevigata	RLG00000002797 RLG00000013178
rosa_multiflora	Rmu_co8436609.1_g000001 Rmu_sc0002080.1_g000041 Rmu_sc0008539.1_g000001 Rmu_sc0009618.1_g000016 Rmu_sc0010076.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245800 Rroxscaffold_7G00189290
rosa_rugosa	Rorug06G0120600 Rorug07G0142700 Rorug07G0142800 Rorug07G0319500
rosa_samantha	Rh6AG229300 Rh6BG234500 Rh6CG236700 Rh6DG228300 Rh7AG276000 Rh7BG270400 Rh7BG445400 Rh7CG294900 Rh7DG282600
rosa_wichuraiana	Rw0G023490 Rw6G020080 Rw7G023850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1046
Acc65I	GGTACC	1 cut(s)	158
AccB1I	GGYRCC	1 cut(s)	158
AccB7I	CCANNNNNTGG	1 cut(s)	926
AccI	GTMKAC	1 cut(s)	514
AccIII	TCCGGA	1 cut(s)	947
AciI	CCGC	5 cut(s)	327, 704, 797, 901, 1130
AcoI	YGGCCR	1 cut(s)	1079
AcsI	RAATTY	2 cut(s)	532, 559
AfaI	GTAC	6 cut(s)	160, 278, 423, 586, 691, 1010
AfeI	AGCGCT	1 cut(s)	90
AfiI	CCNNNNNNNGG	4 cut(s)	176, 221, 323, 926
AgsI	TTSAA	8 cut(s)	230, 304, 495, 544, 565, 788, 851, 980
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	7 cut(s)	320, 359, 944, 975, 992, 1070, 1199
AluI	AGCT	7 cut(s)	320, 359, 944, 975, 992, 1070, 1199
Alw26I	GTCTC	2 cut(s)	909, 1235
Aor13HI	TCCGGA	1 cut(s)	947
Aor51HI	AGCGCT	1 cut(s)	90
AoxI	GGCC	5 cut(s)	135, 204, 1079, 1210, 1314
ApeKI	GCWGC	5 cut(s)	71, 794, 992, 1070, 1222
ApoI	RAATTY	2 cut(s)	532, 559
Asp718I	GGTACC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	5 cut(s)	41, 77, 205, 212, 1314
AsuHPI	GGTGA	3 cut(s)	253, 520, 1069
AvaII	GGWCC	3 cut(s)	41, 77, 212
AxyI	CCTNAGG	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	4
BbvI	GCAGC	5 cut(s)	58, 781, 979, 1057, 1234
BccI	CCATC	7 cut(s)	148, 231, 405, 492, 722, 856, 1277
BciT130I	CCWGG	1 cut(s)	209
BcoDI	GTCTC	2 cut(s)	909, 1235
BfaI	CTAG	2 cut(s)	86, 1302
BfmI	CTRYAG	4 cut(s)	147, 388, 993, 1200
BfoI	RGCGCY	1 cut(s)	92
BglII	AGATCT	1 cut(s)	1288
BisI	GCNGC	6 cut(s)	72, 795, 798, 993, 1071, 1223
BlpI	GCTNAGC	1 cut(s)	971
BlsI	GCNGC	6 cut(s)	73, 796, 799, 994, 1072, 1224
Bme1390I	CCNGG	1 cut(s)	209
Bme18I	GGWCC	3 cut(s)	41, 77, 212
BmgT120I	GGNCC	5 cut(s)	41, 77, 205, 212, 1314
BmiI	GGNNCC	7 cut(s)	42, 79, 160, 213, 489, 916, 1111
BmrFI	CCNGG	1 cut(s)	209
BmrI	ACTGGG	3 cut(s)	275, 702, 914
BmsI	GCATC	3 cut(s)	1072, 1082, 1209
BmuI	ACTGGG	3 cut(s)	275, 702, 914
BpiI	GAAGAC	1 cut(s)	4
Bpu1102I	GCTNAGC	1 cut(s)	971
BpuEI	CTTGAG	1 cut(s)	1157
BsaI	GGTCTC	1 cut(s)	909
BsaJI	CCNNGG	3 cut(s)	207, 208, 627
BsaWI	WCCGGW	1 cut(s)	947
Bsc4I	CCNNNNNNNGG	4 cut(s)	176, 221, 323, 926
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	4 cut(s)	281, 533, 697, 920
Bse21I	CCTNAGG	1 cut(s)	132
BseAI	TCCGGA	1 cut(s)	947
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	3 cut(s)	207, 208, 627
BseGI	GGATG	7 cut(s)	242, 416, 822, 867, 882, 1063, 1263
BseLI	CCNNNNNNNGG	4 cut(s)	176, 221, 323, 926
BseMII	CTCAG	3 cut(s)	123, 876, 954
BseNI	ACTGG	4 cut(s)	281, 533, 697, 920
BseXI	GCAGC	5 cut(s)	58, 781, 979, 1057, 1234
BshFI	GGCC	5 cut(s)	137, 206, 1081, 1212, 1316
BshNI	GGYRCC	1 cut(s)	158
BsiSI	CCGG	3 cut(s)	75, 594, 948
BslFI	GGGAC	2 cut(s)	63, 477
BslI	CCNNNNNNNGG	4 cut(s)	176, 221, 323, 926
BsmAI	GTCTC	2 cut(s)	909, 1235
BsmFI	GGGAC	2 cut(s)	63, 477
BsmI	GAATGC	1 cut(s)	1125
BsnI	GGCC	5 cut(s)	137, 206, 1081, 1212, 1316
Bso31I	GGTCTC	1 cut(s)	909
Bsp13I	TCCGGA	1 cut(s)	947
Bsp143I	GATC	4 cut(s)	709, 1206, 1279, 1288
Bsp1720I	GCTNAGC	1 cut(s)	971
BspACI	CCGC	5 cut(s)	327, 704, 797, 901, 1130
BspANI	GGCC	5 cut(s)	137, 206, 1081, 1212, 1316
BspCNI	CTCAG	3 cut(s)	124, 877, 953
BspEI	TCCGGA	1 cut(s)	947
BspLI	GGNNCC	7 cut(s)	42, 79, 160, 213, 489, 916, 1111
BspMAI	CTGCAG	2 cut(s)	151, 997
BspT107I	GGYRCC	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	909
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	4 cut(s)	281, 533, 697, 920
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	3 cut(s)	207, 208, 627
BssMI	GATC	4 cut(s)	709, 1206, 1279, 1288
BssT1I	CCWWGG	1 cut(s)	627
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	3 cut(s)	62, 1013, 1105
Bst6I	CTCTTC	1 cut(s)	1244
BstDEI	CTNAG	4 cut(s)	132, 885, 940, 971
BstF5I	GGATG	7 cut(s)	242, 416, 822, 867, 882, 1063, 1263
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	4 cut(s)	712, 1209, 1282, 1291
BstMAI	GTCTC	2 cut(s)	909, 1235
BstMBI	GATC	4 cut(s)	709, 1206, 1279, 1288
BstMWI	GCNNNNNNNGC	4 cut(s)	317, 356, 967, 1138
BstNI	CCWGG	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	207
BstSFI	CTRYAG	4 cut(s)	147, 388, 993, 1200
BstV1I	GCAGC	5 cut(s)	58, 781, 979, 1057, 1234
BstV2I	GAAGAC	1 cut(s)	4
BstX2I	RGATCY	1 cut(s)	1288
BstXI	CCANNNNNNTGG	1 cut(s)	120
BstYI	RGATCY	1 cut(s)	1288
Bsu36I	CCTNAGG	1 cut(s)	132
BsuRI	GGCC	5 cut(s)	137, 206, 1081, 1212, 1316
BtgZI	GCGATG	1 cut(s)	815
BtsCI	GGATG	7 cut(s)	242, 416, 822, 867, 882, 1063, 1263
BtsI	GCAGTG	2 cut(s)	357, 844
BtsIMutI	CAGTG	3 cut(s)	67, 357, 844
CfoI	GCGC	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	5 cut(s)	41, 77, 205, 212, 1314
Csp6I	GTAC	6 cut(s)	159, 277, 422, 585, 690, 1009
CspCI	CAANNNNNGTGG	2 cut(s)	327, 362
CviAII	CATG	2 cut(s)	163, 1295
CviQI	GTAC	6 cut(s)	159, 277, 422, 585, 690, 1009
DdeI	CTNAG	4 cut(s)	132, 885, 940, 971
DpnI	GATC	4 cut(s)	711, 1208, 1281, 1290
DpnII	GATC	4 cut(s)	709, 1206, 1279, 1288
EaeI	YGGCCR	1 cut(s)	1079
Eam1104I	CTCTTC	1 cut(s)	1244
EarI	CTCTTC	1 cut(s)	1244
EciI	GGCGGA	1 cut(s)	1119
Eco130I	CCWWGG	1 cut(s)	627
Eco147I	AGGCCT	1 cut(s)	137
Eco31I	GGTCTC	1 cut(s)	909
Eco47I	GGWCC	3 cut(s)	41, 77, 212
Eco47III	AGCGCT	1 cut(s)	90
Eco81I	CCTNAGG	1 cut(s)	132
EcoRII	CCWGG	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	627
ErhI	CCWWGG	1 cut(s)	627
FaeI	CATG	2 cut(s)	166, 1298
FaqI	GGGAC	2 cut(s)	63, 477
FatI	CATG	2 cut(s)	162, 1294
FauNDI	CATATG	1 cut(s)	1237
FblI	GTMKAC	1 cut(s)	514
Fnu4HI	GCNGC	6 cut(s)	72, 795, 798, 993, 1071, 1223
FokI	GGATG	7 cut(s)	249, 423, 829, 874, 889, 1050, 1270
Fsp4HI	GCNGC	6 cut(s)	72, 795, 798, 993, 1071, 1223
FspBI	CTAG	2 cut(s)	86, 1302
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	6 cut(s)	72, 795, 798, 993, 1071, 1223
HaeII	RGCGCY	1 cut(s)	92
HaeIII	GGCC	5 cut(s)	137, 206, 1081, 1212, 1316
HapII	CCGG	3 cut(s)	75, 594, 948
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	2 cut(s)	166, 1298
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HindIII	AAGCTT	1 cut(s)	973
HinfI	GANTC	8 cut(s)	258, 342, 511, 575, 784, 842, 951, 1090
HpaII	CCGG	3 cut(s)	75, 594, 948
HphI	GGTGA	3 cut(s)	253, 520, 1069
Hpy166II	GTNNAC	5 cut(s)	332, 515, 526, 587, 723
Hpy188I	TCNGA	3 cut(s)	742, 1168, 1279
Hpy188III	TCNNGA	5 cut(s)	495, 713, 948, 980, 1307
Hpy8I	GTNNAC	5 cut(s)	332, 515, 526, 587, 723
HpyAV	CCTTC	2 cut(s)	92, 501
HpyCH4III	ACNGT	3 cut(s)	62, 1013, 1105
HpyCH4V	TGCA	6 cut(s)	149, 749, 995, 1073, 1125, 1222
HpyF10VI	GCNNNNNNNGC	4 cut(s)	317, 356, 967, 1138
HpyF3I	CTNAG	4 cut(s)	132, 885, 940, 971
Hsp92II	CATG	2 cut(s)	166, 1298
HspAI	GCGC	1 cut(s)	89
Kpn2I	TCCGGA	1 cut(s)	947
KpnI	GGTACC	1 cut(s)	162
Kzo9I	GATC	4 cut(s)	709, 1206, 1279, 1288
LmnI	GCTCC	1 cut(s)	487
Lsp1109I	GCAGC	5 cut(s)	58, 781, 979, 1057, 1234
LweI	GCATC	3 cut(s)	1072, 1082, 1209
MaeI	CTAG	2 cut(s)	86, 1302
MaeIII	GTNAC	2 cut(s)	731, 839
MalI	GATC	4 cut(s)	711, 1208, 1281, 1290
MboI	GATC	4 cut(s)	709, 1206, 1279, 1288
MboII	GAAGA	6 cut(s)	4, 13, 192, 664, 1261, 1283
MflI	RGATCY	1 cut(s)	1288
MluCI	AATT	6 cut(s)	474, 532, 559, 684, 753, 1143
MlyI	GAGTC	4 cut(s)	267, 520, 836, 960
MmeI	TCCRAC	6 cut(s)	465, 643, 761, 997, 1078, 1087
MroI	TCCGGA	1 cut(s)	947
MseI	TTAA	5 cut(s)	251, 383, 398, 683, 1325
MspA1I	CMGCKG	1 cut(s)	1070
MspI	CCGG	3 cut(s)	75, 594, 948
MspR9I	CCNGG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	1125
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	4 cut(s)	317, 356, 967, 1138
NdeI	CATATG	1 cut(s)	1237
NdeII	GATC	4 cut(s)	709, 1206, 1279, 1288
NlaIII	CATG	2 cut(s)	166, 1298
NlaIV	GGNNCC	7 cut(s)	42, 79, 160, 213, 489, 916, 1111
NmeAIII	GCCGAG	1 cut(s)	1057
NmuCI	GTSAC	1 cut(s)	839
PasI	CCCWGGG	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	137
PctI	GAATGC	1 cut(s)	1125
PfeI	GAWTC	4 cut(s)	342, 575, 784, 1090
PflMI	CCANNNNNTGG	1 cut(s)	926
PkrI	GCNGC	6 cut(s)	73, 796, 799, 994, 1072, 1224
PleI	GAGTC	4 cut(s)	266, 519, 836, 959
PpsI	GAGTC	4 cut(s)	266, 519, 836, 959
PsiI	TTATAA	1 cut(s)	1046
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	7 cut(s)	42, 79, 160, 213, 489, 916, 1111
PspPI	GGNCC	5 cut(s)	41, 77, 205, 212, 1314
PstI	CTGCAG	2 cut(s)	151, 997
PsuI	RGATCY	1 cut(s)	1288
PvuII	CAGCTG	1 cut(s)	1070
RsaI	GTAC	6 cut(s)	160, 278, 423, 586, 691, 1010
RsaNI	GTAC	6 cut(s)	159, 277, 422, 585, 690, 1009
SaqAI	TTAA	5 cut(s)	251, 383, 398, 683, 1325
SatI	GCNGC	6 cut(s)	72, 795, 798, 993, 1071, 1223
Sau3AI	GATC	4 cut(s)	709, 1206, 1279, 1288
Sau96I	GGNCC	5 cut(s)	41, 77, 205, 212, 1314
SchI	GAGTC	4 cut(s)	267, 520, 836, 960
ScrFI	CCNGG	1 cut(s)	209
SfaNI	GCATC	3 cut(s)	1072, 1082, 1209
SfcI	CTRYAG	4 cut(s)	147, 388, 993, 1200
SinI	GGWCC	3 cut(s)	41, 77, 212
SmlI	CTYRAG	1 cut(s)	1172
SmoI	CTYRAG	1 cut(s)	1172
Sse9I	AATT	6 cut(s)	474, 532, 559, 684, 753, 1143
SseBI	AGGCCT	1 cut(s)	137
SsiI	CCGC	5 cut(s)	327, 704, 797, 901, 1130
SspI	AATATT	1 cut(s)	1050
SspMI	CTAG	2 cut(s)	86, 1302
StuI	AGGCCT	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	627
TaaI	ACNGT	3 cut(s)	62, 1013, 1105
TasI	AATT	6 cut(s)	474, 532, 559, 684, 753, 1143
TatI	WGTACW	3 cut(s)	421, 584, 1008
TauI	GCSGC	1 cut(s)	800
TfiI	GAWTC	4 cut(s)	342, 575, 784, 1090
Tru1I	TTAA	5 cut(s)	251, 383, 398, 683, 1325
Tru9I	TTAA	5 cut(s)	251, 383, 398, 683, 1325
TscAI	CASTG	3 cut(s)	67, 357, 844
TseFI	GTSAC	1 cut(s)	839
TseI	GCWGC	5 cut(s)	71, 794, 992, 1070, 1222
Tsp45I	GTSAC	1 cut(s)	839
TspDTI	ATGAA	4 cut(s)	106, 1024, 1274, 1283
TspRI	CASTG	3 cut(s)	67, 357, 844
Van91I	CCANNNNNTGG	1 cut(s)	926
VpaK11BI	GGWCC	3 cut(s)	41, 77, 212
XapI	RAATTY	2 cut(s)	532, 559
XmiI	GTMKAC	1 cut(s)	514
XspI	CTAG	2 cut(s)	86, 1302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.