Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001720

Physical Location & Seq

Genomic Coordinates Reverse (-)

13752699 .. 13755512

Gene Structure 2814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g15680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGTTGGAAAACAATGTTGGAATGGGGGAAGAATCCTCTCACGACTTACACAAGTACAGTAAGGTTTCAATTGTACCTCTTGTATTCTTGATATTCTATGAGGTCTCTGGCGGCCCATTTGGCGTCGAAGACAGTGTCCAGGCTGCCGGTCCCCTGTTAGCCCTTCTTGGGTTTCTGGTTTTTGCACTCATATGGAGTGTTCCTGAGGCCTTGATAACGGCAGAAATGGGCACTATGTTCCCTGAAAATGGGGGATATGTTGTTTGGGTTTCATCAGCTTTGGGTCCATTTTGGGGATTTCAGCAAGGCTGGGTGAAATGGCTTAGTGGGGTGATTGATAATGCTCTGTACCCTGTTCTATTTCTGGACTATCTGAAGTCAGCAATTCCAGCTTTAGAAAGTGGTTTGCCAAGGACAATTGCAGTGTTGGTTTTGACTGCAATTCTCACTTATTTGAACTATAGGGGTTTAACCATAGTGGGCTGGGTTGCTATTTTACTAGGGGTGTTTTCACTTCTTCCTTTTATAGTCATGGGGCTGATAGCAATTCCGGAGATAGAGCCTTCGAGGTGGCTTATCGTAGATCTGGGCACTGTTAATTGGAGTTTGTACTTGAATACGCTTTTCTGGAATCTTAATTACTGGGATTCAATCAGTACACTTACAGGGGAAGTGGAAAACCCTAGTAAAACTCTTCCAAAAGCTCTGTCTTATGCTCTAATCATGGTTCTTCTTGGATACATTTTCCCTCTTCTGACTGGTACTGGAGCTATTCCAGTTGATCGTGAATTGTGGTCCGATGGTTATTTTGCTGATATTGCTAAAATTCTGGGAGGTGTATGGTTAAGAACCTGGGTTTTAGCGGCAGCTGCTTTGTCAAACATGGGTATGTTCGTGGCTGAAATGAGCAGCGACTCCTTTCAACTTCTGGGTATGGCAGAAATTGGGATGCTTCCTTCATTCTTTGCCAAACGATCTCGTTATGGTACCCCTCTTACGGGAATCTTGTTCTCTGCATCTGGTGTAATTCTGCTCTCGTGGTTGAGCTTCCAAGAGATTGTAGCGGCAGAGAATTACTTGTACTGTTTCGGGATGATTATGGAATTCATAGCATTCGTGAAGTTAAGATTTCAGCACCCAAATTTACCAAGGCCTTACAAGATACCTTTTGGGAATATTGGAGCGATTTTGATATGTATTCCTCCAACAGTGTTGATTTTGGTAGTTTTAGCCCTTGCTTCGCTAAAGATCATGGCTATAAGCATTGCTGCTGCGGTAGTCGGGCTAGTCTTGCAGCCTTGTGTTGAGTACATGAAAAAGAAGAGATGGTATGATTTCTCCGGGAGTTTTGACAATCCAGATTGCCAATATGCATCAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015203 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015846 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902047 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04113 ko04114 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04113 map04114 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

461

Amino Acids

50.63

Weight (kDa)

4.95

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	28 - 407	1.6e-39	Amino acid permease
AA_permease	PF00324	45 - 422	4.6e-21	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31820 AT1G31830 AT1G31830 AT5G05630
fragaria_vesca	FvH4_2g15680 FvH4_2g15680 FvH4_4g35270 FvH4_5g24050 FvH4_5g24050
malus_domestica	MD06G1016700.v1.1 MD17G1241900.v1.1
prunus_persica	Prupe.5G019700_v2.0.a1 Prupe.8G169300_v2.0.a1 Prupe.8G169300_v2.0.a1 Prupe.8G169300_v2.0.a1 Prupe.8G169300_v2.0.a1 Prupe.8G169300_v2.0.a1
pyrus_communis	pycom05g11950 pycom06g01360 pycom10g10980
rosa_chinensis	RchiOBHm_Chr6g0278981 RchiOBHm_Chr7g0213541 RchiOBHm_Chr7g0243451
rosa_laevigata	RLG00000002797 RLG00000013178
rosa_multiflora	Rmu_co8436609.1_g000001 Rmu_sc0002080.1_g000041 Rmu_sc0008539.1_g000001 Rmu_sc0009618.1_g000016 Rmu_sc0010076.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245800 Rroxscaffold_7G00189290
rosa_rugosa	Rorug06G0120600 Rorug07G0142700 Rorug07G0142800 Rorug07G0319500
rosa_samantha	Rh6AG229300 Rh6BG234500 Rh6CG236700 Rh6DG228300 Rh7AG276000 Rh7BG270400 Rh7BG445400 Rh7CG294900 Rh7DG282600
rosa_wichuraiana	Rw0G023490 Rw6G020080 Rw7G023850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	986
AccB1I	GGYRCC	1 cut(s)	986
AccIII	TCCGGA	1 cut(s)	550
AciI	CCGC	4 cut(s)	111, 863, 1064, 1274
AcsI	RAATTY	3 cut(s)	825, 1103, 1141
AcuI	CTGAAG	1 cut(s)	395
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	9 cut(s)	56, 75, 350, 611, 658, 763, 988, 1082, 1310
AfiI	CCNNNNNNNGG	5 cut(s)	168, 248, 293, 997, 998
AgsI	TTSAA	5 cut(s)	69, 457, 616, 651, 923
AjnI	CCWGG	2 cut(s)	138, 851
AjuI	GAANNNNNNNTTGG	1 cut(s)	32
AluBI	AGCT	6 cut(s)	278, 392, 704, 770, 869, 1047
AluI	AGCT	6 cut(s)	278, 392, 704, 770, 869, 1047
Alw26I	GTCTC	1 cut(s)	109
Aor13HI	TCCGGA	1 cut(s)	550
AoxI	GGCC	3 cut(s)	112, 207, 1151
ApeKI	GCWGC	7 cut(s)	143, 866, 869, 909, 1268, 1271, 1294
ApoI	RAATTY	3 cut(s)	825, 1103, 1141
ArsI	GACNNNNNNTTYG	4 cut(s)	120, 152, 692, 724
Asp718I	GGTACC	1 cut(s)	986
AspS9I	GGNCC	4 cut(s)	113, 149, 284, 795
AsuC2I	CCSGG	1 cut(s)	1342
AsuHPI	GGTGA	2 cut(s)	325, 343
AvaII	GGWCC	3 cut(s)	149, 284, 795
AxyI	CCTNAGG	1 cut(s)	204
BaeGI	GKGCMC	2 cut(s)	233, 593
BanI	GGYRCC	1 cut(s)	986
BauI	CACGAG	1 cut(s)	1036
BbsI	GAAGAC	1 cut(s)	135
BbvI	GCAGC	7 cut(s)	130, 856, 878, 921, 1255, 1258, 1306
BccI	CCATC	2 cut(s)	794, 1320
BceAI	ACGGC	1 cut(s)	234
BciT130I	CCWGG	2 cut(s)	140, 853
BciVI	GTATCC	1 cut(s)	731
BcnI	CCSGG	1 cut(s)	1342
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	3 cut(s)	500, 684, 1286
BfmI	CTRYAG	1 cut(s)	460
BfuI	GTATCC	1 cut(s)	731
BglI	GCCNNNNNGGC	1 cut(s)	120
BglII	AGATCT	1 cut(s)	583
Bme1390I	CCNGG	3 cut(s)	140, 853, 1342
Bme18I	GGWCC	3 cut(s)	149, 284, 795
BmgT120I	GGNCC	4 cut(s)	113, 149, 284, 795
BmiI	GGNNCC	3 cut(s)	151, 285, 988
BmrFI	CCNGG	3 cut(s)	140, 853, 1342
BmrI	ACTGGG	1 cut(s)	652
BmsI	GCATC	2 cut(s)	939, 1025
BmuI	ACTGGG	1 cut(s)	652
BpiI	GAAGAC	1 cut(s)	135
BpmI	CTGGAG	1 cut(s)	786
BpuMI	CCSGG	1 cut(s)	1342
BsaHI	GRCGYC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	109
BsaJI	CCNNGG	3 cut(s)	410, 852, 1148
BsaWI	WCCGGW	1 cut(s)	550
Bsc4I	CCNNNNNNNGG	5 cut(s)	168, 248, 293, 997, 998
Bse118I	RCCGGY	1 cut(s)	146
Bse1I	ACTGG	4 cut(s)	647, 763, 769, 776
Bse21I	CCTNAGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	1263
BseAI	TCCGGA	1 cut(s)	550
BseBI	CCWGG	2 cut(s)	140, 853
BseDI	CCNNGG	3 cut(s)	410, 852, 1148
BseGI	GGATG	2 cut(s)	954, 1098
BseLI	CCNNNNNNNGG	5 cut(s)	168, 248, 293, 997, 998
BseMI	GCAATG	1 cut(s)	1263
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	4 cut(s)	647, 763, 769, 776
BseSI	GKGCMC	2 cut(s)	233, 593
BseXI	GCAGC	7 cut(s)	130, 856, 878, 921, 1255, 1258, 1306
BseYI	CCCAGC	2 cut(s)	309, 483
BshFI	GGCC	3 cut(s)	114, 209, 1153
BshNI	GGYRCC	1 cut(s)	986
BsiSI	CCGG	3 cut(s)	147, 551, 1341
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	5 cut(s)	168, 248, 293, 997, 998
BsmAI	GTCTC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	135
BsmI	GAATGC	1 cut(s)	1112
BsnI	GGCC	3 cut(s)	114, 209, 1153
Bso31I	GGTCTC	1 cut(s)	109
Bsp1286I	GDGCHC	2 cut(s)	233, 593
Bsp13I	TCCGGA	1 cut(s)	550
Bsp143I	GATC	4 cut(s)	583, 781, 974, 1248
BspACI	CCGC	4 cut(s)	111, 863, 1064, 1274
BspANI	GGCC	3 cut(s)	114, 209, 1153
BspCNI	CTCAG	1 cut(s)	196
BspEI	TCCGGA	1 cut(s)	550
BspLI	GGNNCC	3 cut(s)	151, 285, 988
BspT107I	GGYRCC	1 cut(s)	986
BspTNI	GGTCTC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	1263
BsrFI	RCCGGY	1 cut(s)	146
BsrI	ACTGG	4 cut(s)	647, 763, 769, 776
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	3 cut(s)	410, 852, 1148
BssMI	GATC	4 cut(s)	583, 781, 974, 1248
BssNI	GRCGYC	1 cut(s)	123
BssSI	CACGAG	1 cut(s)	1036
BssT1I	CCWWGG	2 cut(s)	410, 1148
Bst2BI	CACGAG	1 cut(s)	1036
Bst2UI	CCWGG	2 cut(s)	140, 853
Bst4CI	ACNGT	5 cut(s)	59, 134, 595, 1085, 1210
Bst6I	CTCTTC	3 cut(s)	699, 756, 1316
BstACI	GRCGYC	1 cut(s)	123
BstDEI	CTNAG	2 cut(s)	204, 323
BstF5I	GGATG	2 cut(s)	954, 1098
BstKTI	GATC	4 cut(s)	586, 784, 977, 1251
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	4 cut(s)	583, 781, 974, 1248
BstMWI	GCNNNNNNNGC	5 cut(s)	120, 389, 818, 869, 1291
BstNI	CCWGG	2 cut(s)	140, 853
BstSCI	CCNGG	3 cut(s)	138, 851, 1340
BstSFI	CTRYAG	1 cut(s)	460
BstSLI	GKGCMC	2 cut(s)	233, 593
BstV1I	GCAGC	7 cut(s)	130, 856, 878, 921, 1255, 1258, 1306
BstV2I	GAAGAC	1 cut(s)	135
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
Bsu36I	CCTNAGG	1 cut(s)	204
BsuI	GTATCC	1 cut(s)	731
BsuRI	GGCC	3 cut(s)	114, 209, 1153
BtsCI	GGATG	2 cut(s)	954, 1098
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	5 cut(s)	139, 429, 591, 1215, 1383
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	4 cut(s)	113, 149, 284, 795
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	9 cut(s)	55, 74, 349, 610, 657, 762, 987, 1081, 1309
CviAII	CATG	5 cut(s)	532, 724, 883, 1252, 1312
CviQI	GTAC	9 cut(s)	55, 74, 349, 610, 657, 762, 987, 1081, 1309
DdeI	CTNAG	2 cut(s)	204, 323
DpnI	GATC	4 cut(s)	585, 783, 976, 1250
DpnII	GATC	4 cut(s)	583, 781, 974, 1248
Eam1104I	CTCTTC	3 cut(s)	699, 756, 1316
EarI	CTCTTC	3 cut(s)	699, 756, 1316
Eco130I	CCWWGG	2 cut(s)	410, 1148
Eco147I	AGGCCT	2 cut(s)	209, 1153
Eco31I	GGTCTC	1 cut(s)	109
Eco47I	GGWCC	3 cut(s)	149, 284, 795
Eco57I	CTGAAG	1 cut(s)	395
Eco81I	CCTNAGG	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	1103
EcoRII	CCWGG	2 cut(s)	138, 851
EcoT14I	CCWWGG	2 cut(s)	410, 1148
EcoT22I	ATGCAT	1 cut(s)	1375
ErhI	CCWWGG	2 cut(s)	410, 1148
FaeI	CATG	5 cut(s)	535, 727, 886, 1255, 1315
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	5 cut(s)	531, 723, 882, 1251, 1311
FauNDI	CATATG	1 cut(s)	191
FokI	GGATG	2 cut(s)	961, 1105
FspBI	CTAG	3 cut(s)	500, 684, 1286
GsaI	CCCAGC	2 cut(s)	313, 487
GsuI	CTGGAG	1 cut(s)	786
HaeIII	GGCC	3 cut(s)	114, 209, 1153
HapII	CCGG	3 cut(s)	147, 551, 1341
HgaI	GACGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	5 cut(s)	535, 727, 886, 1255, 1315
HinfI	GANTC	5 cut(s)	32, 631, 647, 914, 1002
HpaII	CCGG	3 cut(s)	147, 551, 1341
HphI	GGTGA	2 cut(s)	325, 343
Hpy166II	GTNNAC	1 cut(s)	659
Hpy188I	TCNGA	3 cut(s)	375, 756, 799
Hpy8I	GTNNAC	1 cut(s)	659
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	3 cut(s)	173, 573, 966
HpyCH4III	ACNGT	5 cut(s)	59, 134, 595, 1085, 1210
HpyCH4V	TGCA	6 cut(s)	185, 422, 440, 1016, 1294, 1373
HpyF10VI	GCNNNNNNNGC	5 cut(s)	120, 389, 818, 869, 1291
HpyF3I	CTNAG	2 cut(s)	204, 323
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	5 cut(s)	535, 727, 886, 1255, 1315
Kpn2I	TCCGGA	1 cut(s)	550
KpnI	GGTACC	1 cut(s)	990
Kzo9I	GATC	4 cut(s)	583, 781, 974, 1248
LmnI	GCTCC	2 cut(s)	767, 1181
Lsp1109I	GCAGC	7 cut(s)	130, 856, 878, 921, 1255, 1258, 1306
LweI	GCATC	2 cut(s)	939, 1025
MaeI	CTAG	3 cut(s)	500, 684, 1286
MalI	GATC	4 cut(s)	585, 783, 976, 1250
MboI	GATC	4 cut(s)	583, 781, 974, 1248
MboII	GAAGA	7 cut(s)	41, 140, 509, 686, 722, 743, 1333
MfeI	CAATTG	2 cut(s)	69, 417
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	2 cut(s)	233, 593
MlyI	GAGTC	1 cut(s)	908
MmeI	TCCRAC	1 cut(s)	1229
MnlI	CCTC	9 cut(s)	46, 87, 94, 199, 561, 759, 827, 1002, 1212
Mph1103I	ATGCAT	1 cut(s)	1375
MroI	TCCGGA	1 cut(s)	550
MseI	TTAA	5 cut(s)	470, 597, 636, 845, 1124
MslI	CAYNNNNRTG	2 cut(s)	190, 887
MspA1I	CMGCKG	1 cut(s)	869
MspI	CCGG	3 cut(s)	147, 551, 1341
MspR9I	CCNGG	3 cut(s)	140, 853, 1342
MunI	CAATTG	2 cut(s)	69, 417
Mva1269I	GAATGC	1 cut(s)	1112
MvaI	CCWGG	2 cut(s)	140, 853
MwoI	GCNNNNNNNGC	5 cut(s)	120, 389, 818, 869, 1291
NciI	CCSGG	1 cut(s)	1342
NdeI	CATATG	1 cut(s)	191
NdeII	GATC	4 cut(s)	583, 781, 974, 1248
NlaIII	CATG	5 cut(s)	535, 727, 886, 1255, 1315
NlaIV	GGNNCC	3 cut(s)	151, 285, 988
NsiI	ATGCAT	1 cut(s)	1375
PceI	AGGCCT	2 cut(s)	209, 1153
PctI	GAATGC	1 cut(s)	1112
PfeI	GAWTC	4 cut(s)	32, 631, 647, 1002
PflFI	GACNNNGTC	1 cut(s)	134
PfoI	TCCNGGA	1 cut(s)	1340
PleI	GAGTC	1 cut(s)	908
PpsI	GAGTC	1 cut(s)	908
Psp6I	CCWGG	2 cut(s)	138, 851
PspFI	CCCAGC	2 cut(s)	309, 483
PspGI	CCWGG	2 cut(s)	138, 851
PspN4I	GGNNCC	3 cut(s)	151, 285, 988
PspPI	GGNCC	4 cut(s)	113, 149, 284, 795
PsuI	RGATCY	1 cut(s)	583
PsyI	GACNNNGTC	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	869
RsaI	GTAC	9 cut(s)	56, 75, 350, 611, 658, 763, 988, 1082, 1310
RsaNI	GTAC	9 cut(s)	55, 74, 349, 610, 657, 762, 987, 1081, 1309
RseI	CAYNNNNRTG	2 cut(s)	190, 887
SaqAI	TTAA	5 cut(s)	470, 597, 636, 845, 1124
Sau3AI	GATC	4 cut(s)	583, 781, 974, 1248
Sau96I	GGNCC	4 cut(s)	113, 149, 284, 795
SchI	GAGTC	1 cut(s)	908
ScrFI	CCNGG	3 cut(s)	140, 853, 1342
SduI	GDGCHC	2 cut(s)	233, 593
SfaNI	GCATC	2 cut(s)	939, 1025
SfcI	CTRYAG	1 cut(s)	460
SinI	GGWCC	3 cut(s)	149, 284, 795
SmiMI	CAYNNNNRTG	2 cut(s)	190, 887
SseBI	AGGCCT	2 cut(s)	209, 1153
SsiI	CCGC	4 cut(s)	111, 863, 1064, 1274
SspI	AATATT	1 cut(s)	1177
SspMI	CTAG	3 cut(s)	500, 684, 1286
StuI	AGGCCT	2 cut(s)	209, 1153
StyD4I	CCNGG	3 cut(s)	138, 851, 1340
StyI	CCWWGG	2 cut(s)	410, 1148
TaaI	ACNGT	5 cut(s)	59, 134, 595, 1085, 1210
TaqI	TCGA	2 cut(s)	126, 566
TatI	WGTACW	5 cut(s)	54, 609, 656, 1080, 1308
TauI	GCSGC	3 cut(s)	114, 866, 1067
TfiI	GAWTC	4 cut(s)	32, 631, 647, 1002
Tru1I	TTAA	5 cut(s)	470, 597, 636, 845, 1124
Tru9I	TTAA	5 cut(s)	470, 597, 636, 845, 1124
TscAI	CASTG	5 cut(s)	139, 429, 598, 1215, 1383
TseI	GCWGC	7 cut(s)	143, 866, 869, 909, 1268, 1271, 1294
TspDTI	ATGAA	4 cut(s)	261, 948, 1096, 1328
TspRI	CASTG	5 cut(s)	139, 429, 598, 1215, 1383
Tth111I	GACNNNGTC	1 cut(s)	134
VpaK11BI	GGWCC	3 cut(s)	149, 284, 795
XapI	RAATTY	3 cut(s)	825, 1103, 1141
XspI	CTAG	3 cut(s)	500, 684, 1286
Zsp2I	ATGCAT	1 cut(s)	1375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.