pycom05g11950

polyamine transporter At1g31830 isoform X1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
15457217 .. 15459340
2124 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g11950.1

Sequence Viewer

Length: 1455 bp
ATGAAACATAGAAACTTACCTATTAGGCAAAGTAATCCTAAAATGTCGGACAACAATGTTGCTGAGTATGTTGGTTTGGGGGAAGGATCCTCGCACGACTTAAATAAGTATCAAAAGGTTTCAATTATACCTCTTGTCTTCTTGATCTTCTACGAGGTTTCGGGAGGTCCATTTGGTGTCGAAGACAGTGTCCAGGCAGCTGGTCCCCTTTTAGCCCTCCTTGGTTTTCTGGTTTTTGCCATCATATGGAGTATTCCAGAGGCATTGATAACTGCAGAAATGGGTACTATGTTCCCCGAGAATGGGGGATATGTTGTTTGGGTCTCATCAGCTTTGGGTCCGTACTGGGGCTTTCAGCAAGGATGGGTAAAATGGCTTAGTGGGGTGATTGATAACGCTCTATACCCTGTTCTGTTTCTTGACTATCTCAAATCAGCAATTCCGGCTTTAGAGAGCGGTCTCCCAAGGACAATTGCTGTGTTGGTTTTGACAGCAATGCTCACTTACATGAACTACAGGGGTATGACAATAGTGGGTTGGGCTGCTACCTTACTGGGGGTGTTTTCACTTCTTCCCTTCATATTCATGGGATTTATAGCAATCCCCGAACTAAATCCTTCAAATTGGTTTGTGGTAAATCTGGAGACTGTGAATTGGACTATGTACTTGAACACACTGTTTTGGAATCTTAATTACTGGGATTCAATTAGTACTCTTGCAGGGGAGGTGGAAAACCCTGGTACAACTCTTCCTAAATCTCTCTTTTATGCTCTTATCTTGGTTGTGGTTGGATACATTTTCCCTCTTCTGATTGGTACCGGGGCTGTTCCAGTAGAACGTGAACTATGGTCAGACGGGTATTTCGCAGATATTGCTAAAATGCTTGGAGGTGTATGGTTAAGAACCTGGGTCCTGTCAGCTTCTGCTTTGTCAAACATGGGTATGTTTGTGGCTGAAATGAGCAGCGACTCCTTTCAACTTTTGGGTATGGCAGAACGTGGGATGCTTCCTTCAATCTTTGCCAAACGATCTCGTTATGGCACTCCACTTACCGGAATCTTATTCTCTGCATCCGGTGTAATCTTGCTTTCCTTTTTGAGCTTCCAAGAGATCGTAGCTGCTGAGAACTACTTGTATTGCTTTGGAATGATTATGGAATTCATCGCGTTTGTGAAGTTGAGGATGAAACACCCGGCTGCATCGCGGCCTTTTAAGATACCGGTTGGTACAGTGGGAGCAATTTTGATCTGCATTCCTCCGACGCTGTTAATCTTTGTAGTTTTAGCTCTTGCTACTCCAAAGGTAATGGTTATTAGCATCGCTGGCATGATCATCGGGCTTCTTCTGCAGCCTTGTATCGAGTACACGAAAAACAAGAGGTGGTTTAATTTCTCCACGAAATCTGACCTTCCAGATTTCCACAATGCATATGATCAGTGTAGTATTGTAGCATGA

Protein Analysis

485

Amino Acids

53.48

Weight (kDa)

5.68

Isoelectric Point (pI)

33.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 46 - 444 4.8e-39 Amino acid permease
AA_permease PF00324 63 - 431 2.2e-21 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 815
AccB1I GGYRCC 1 cut(s) 815
AccB7I CCANNNNNTGG 1 cut(s) 246
AccBSI CCGCTC 1 cut(s) 456
AccII CGCG 2 cut(s) 1166, 1204
AciI CCGC 2 cut(s) 456, 1204
AclWI GGATC 2 cut(s) 81, 94
AcsI RAATTY 1 cut(s) 1157
AfaI GTAC 8 cut(s) 286, 344, 665, 712, 742, 817, 1228, 1364
AfiI CCNNNNNNNGG 6 cut(s) 246, 302, 303, 347, 555, 1052
AgeI ACCGGT 1 cut(s) 1219
AgsI TTSAA 6 cut(s) 123, 621, 670, 705, 977, 1014
AjnI CCWGG 3 cut(s) 192, 736, 905
AluBI AGCT 6 cut(s) 200, 332, 920, 1101, 1118, 1286
AluI AGCT 6 cut(s) 200, 332, 920, 1101, 1118, 1286
Alw26I GTCTC 3 cut(s) 328, 464, 638
AlwI GGATC 2 cut(s) 81, 94
AlwNI CAGNNNCTG 1 cut(s) 923
Ama87I CYCGRG 1 cut(s) 296
AoxI GGCC 1 cut(s) 1205
ApeKI GCWGC 6 cut(s) 197, 542, 963, 1118, 1196, 1348
ApoI RAATTY 1 cut(s) 1157
ArsI GACNNNNNNTTYG 4 cut(s) 174, 206, 845, 877
AsiGI ACCGGT 1 cut(s) 1219
Asp718I GGTACC 1 cut(s) 815
AspS9I GGNCC 4 cut(s) 167, 203, 338, 910
AsuC2I CCSGG 2 cut(s) 820, 1193
AsuHPI GGTGA 1 cut(s) 397
AvaI CYCGRG 1 cut(s) 296
AvaII GGWCC 4 cut(s) 167, 203, 338, 910
BamHI GGATCC 1 cut(s) 86
BanI GGYRCC 1 cut(s) 815
BbsI GAAGAC 2 cut(s) 130, 189
BbvI GCAGC 6 cut(s) 209, 529, 975, 1105, 1183, 1360
BccI CCATC 2 cut(s) 248, 357
BcgI CGANNNNNNTGC 2 cut(s) 1315, 1349
BciT130I CCWGG 3 cut(s) 194, 738, 907
BciVI GTATCC 1 cut(s) 785
BclI TGATCA 2 cut(s) 1329, 1432
BcnI CCSGG 2 cut(s) 820, 1193
BcoDI GTCTC 3 cut(s) 328, 464, 638
BfmI CTRYAG 3 cut(s) 273, 514, 1346
BfuI GTATCC 1 cut(s) 785
BisI GCNGC 7 cut(s) 198, 543, 964, 1119, 1197, 1205, 1349
BlsI GCNGC 7 cut(s) 199, 544, 965, 1120, 1198, 1206, 1350
BmcAI AGTACT 1 cut(s) 712
Bme1390I CCNGG 5 cut(s) 194, 738, 820, 907, 1193
Bme18I GGWCC 4 cut(s) 167, 203, 338, 910
BmeT110I CYCGRG 1 cut(s) 296
BmgT120I GGNCC 4 cut(s) 167, 203, 338, 910
BmiI GGNNCC 5 cut(s) 88, 205, 339, 817, 911
BmrFI CCNGG 5 cut(s) 194, 738, 820, 907, 1193
BmrI ACTGGG 3 cut(s) 355, 563, 706
BmsI GCATC 4 cut(s) 993, 1079, 1208, 1326
BmuI ACTGGG 3 cut(s) 355, 563, 706
BpiI GAAGAC 2 cut(s) 130, 189
BpmI CTGGAG 1 cut(s) 662
BpuMI CCSGG 2 cut(s) 820, 1193
BsaI GGTCTC 2 cut(s) 328, 464
BsaJI CCNNGG 5 cut(s) 220, 464, 736, 819, 906
BsaWI WCCGGW 3 cut(s) 1052, 1073, 1219
Bsc4I CCNNNNNNNGG 6 cut(s) 246, 302, 303, 347, 555, 1052
Bse118I RCCGGY 1 cut(s) 1219
Bse1I ACTGG 4 cut(s) 350, 558, 701, 830
Bse3DI GCAATG 1 cut(s) 501
BseBI CCWGG 3 cut(s) 194, 738, 907
BseDI CCNNGG 5 cut(s) 220, 464, 736, 819, 906
BseGI GGATG 4 cut(s) 368, 1008, 1070, 1188
BseLI CCNNNNNNNGG 6 cut(s) 246, 302, 303, 347, 555, 1052
BseMI GCAATG 1 cut(s) 501
BseMII CTCAG 2 cut(s) 54, 1113
BseNI ACTGG 4 cut(s) 350, 558, 701, 830
BseXI GCAGC 6 cut(s) 209, 529, 975, 1105, 1183, 1360
Bsh1236I CGCG 2 cut(s) 1166, 1204
BshFI GGCC 1 cut(s) 1207
BshNI GGYRCC 1 cut(s) 815
BshTI ACCGGT 1 cut(s) 1219
BsiHKCI CYCGRG 1 cut(s) 296
BsiSI CCGG 6 cut(s) 443, 819, 1053, 1074, 1193, 1220
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 6 cut(s) 246, 302, 303, 347, 555, 1052
BsmAI GTCTC 3 cut(s) 328, 464, 638
BsmFI GGGAC 1 cut(s) 189
BsmI GAATGC 1 cut(s) 1251
BsnI GGCC 1 cut(s) 1207
Bso31I GGTCTC 2 cut(s) 328, 464
BsoBI CYCGRG 1 cut(s) 296
Bsp143I GATC 7 cut(s) 86, 144, 1028, 1110, 1245, 1329, 1432
BspACI CCGC 2 cut(s) 456, 1204
BspANI GGCC 1 cut(s) 1207
BspCNI CTCAG 2 cut(s) 55, 1114
BspFNI CGCG 2 cut(s) 1166, 1204
BspLI GGNNCC 5 cut(s) 88, 205, 339, 817, 911
BspMAI CTGCAG 2 cut(s) 277, 1350
BspPI GGATC 2 cut(s) 81, 94
BspT107I GGYRCC 1 cut(s) 815
BspTNI GGTCTC 2 cut(s) 328, 464
BsrBI CCGCTC 1 cut(s) 456
BsrDI GCAATG 1 cut(s) 501
BsrFI RCCGGY 1 cut(s) 1219
BsrI ACTGG 4 cut(s) 350, 558, 701, 830
BssAI RCCGGY 1 cut(s) 1219
BssECI CCNNGG 5 cut(s) 220, 464, 736, 819, 906
BssMI GATC 7 cut(s) 86, 144, 1028, 1110, 1245, 1329, 1432
BssT1I CCWWGG 2 cut(s) 220, 464
Bst2UI CCWGG 3 cut(s) 194, 738, 907
Bst4CI ACNGT 4 cut(s) 188, 649, 678, 1231
Bst6I CTCTTC 2 cut(s) 753, 810
BstAPI GCANNNNNTGC 1 cut(s) 872
BstC8I GCNNGC 1 cut(s) 1324
BstDEI CTNAG 3 cut(s) 63, 377, 1122
BstF5I GGATG 4 cut(s) 368, 1008, 1070, 1188
BstFNI CGCG 2 cut(s) 1166, 1204
BstKTI GATC 7 cut(s) 89, 147, 1031, 1113, 1248, 1332, 1435
BstMAI GTCTC 3 cut(s) 328, 464, 638
BstMBI GATC 7 cut(s) 86, 144, 1028, 1110, 1245, 1329, 1432
BstMWI GCNNNNNNNGC 4 cut(s) 443, 872, 1323, 1345
BstNI CCWGG 3 cut(s) 194, 738, 907
BstSCI CCNGG 5 cut(s) 192, 736, 818, 905, 1191
BstSFI CTRYAG 3 cut(s) 273, 514, 1346
BstUI CGCG 2 cut(s) 1166, 1204
BstV1I GCAGC 6 cut(s) 209, 529, 975, 1105, 1183, 1360
BstV2I GAAGAC 2 cut(s) 130, 189
BstX2I RGATCY 1 cut(s) 86
BstXI CCANNNNNNTGG 1 cut(s) 200
BstYI RGATCY 1 cut(s) 86
BsuI GTATCC 1 cut(s) 785
BsuRI GGCC 1 cut(s) 1207
BtgZI GCGATG 3 cut(s) 1147, 1185, 1303
BtsCI GGATG 4 cut(s) 368, 1008, 1070, 1188
BtsIMutI CAGTG 4 cut(s) 193, 674, 1236, 1442
Cac8I GCNNGC 1 cut(s) 1324
CaiI CAGNNNCTG 1 cut(s) 923
Cfr10I RCCGGY 1 cut(s) 1219
Cfr13I GGNCC 4 cut(s) 167, 203, 338, 910
CseI GACGC 1 cut(s) 1270
Csp6I GTAC 8 cut(s) 285, 343, 664, 711, 741, 816, 1227, 1363
CspAI ACCGGT 1 cut(s) 1219
CviAII CATG 5 cut(s) 508, 586, 937, 1327, 1452
CviQI GTAC 8 cut(s) 285, 343, 664, 711, 741, 816, 1227, 1363
DdeI CTNAG 3 cut(s) 63, 377, 1122
DpnI GATC 7 cut(s) 88, 146, 1030, 1112, 1247, 1331, 1434
DpnII GATC 7 cut(s) 86, 144, 1028, 1110, 1245, 1329, 1432
Eam1104I CTCTTC 2 cut(s) 753, 810
EarI CTCTTC 2 cut(s) 753, 810
Eco130I CCWWGG 2 cut(s) 220, 464
Eco31I GGTCTC 2 cut(s) 328, 464
Eco47I GGWCC 4 cut(s) 167, 203, 338, 910
Eco88I CYCGRG 1 cut(s) 296
EcoO109I RGGNCCY 1 cut(s) 910
EcoRI GAATTC 1 cut(s) 1157
EcoRII CCWGG 3 cut(s) 192, 736, 905
EcoT14I CCWWGG 2 cut(s) 220, 464
EcoT22I ATGCAT 1 cut(s) 1429
ErhI CCWWGG 2 cut(s) 220, 464
FaeI CATG 5 cut(s) 511, 589, 940, 1330, 1455
FaqI GGGAC 1 cut(s) 189
FatI CATG 5 cut(s) 507, 585, 936, 1326, 1451
FauNDI CATATG 2 cut(s) 245, 1429
FbaI TGATCA 2 cut(s) 1329, 1432
Fnu4HI GCNGC 7 cut(s) 198, 543, 964, 1119, 1197, 1205, 1349
FokI GGATG 4 cut(s) 375, 1015, 1057, 1195
Fsp4HI GCNGC 7 cut(s) 198, 543, 964, 1119, 1197, 1205, 1349
GluI GCNGC 7 cut(s) 198, 543, 964, 1119, 1197, 1205, 1349
GsuI CTGGAG 1 cut(s) 662
HaeIII GGCC 1 cut(s) 1207
HapII CCGG 6 cut(s) 443, 819, 1053, 1074, 1193, 1220
HgaI GACGC 1 cut(s) 1270
Hin1II CATG 5 cut(s) 511, 589, 940, 1330, 1455
HinfI GANTC 4 cut(s) 685, 701, 968, 1056
HpaII CCGG 6 cut(s) 443, 819, 1053, 1074, 1193, 1220
HphI GGTGA 1 cut(s) 397
Hpy166II GTNNAC 2 cut(s) 842, 1365
Hpy188I TCNGA 5 cut(s) 49, 810, 853, 1260, 1405
Hpy188III TCNNGA 6 cut(s) 142, 162, 257, 419, 641, 1412
Hpy8I GTNNAC 2 cut(s) 842, 1365
Hpy99I CGWCG 1 cut(s) 1264
HpyAV CCTTC 5 cut(s) 77, 586, 627, 1020, 1418
HpyCH4III ACNGT 4 cut(s) 188, 649, 678, 1231
HpyCH4IV ACGT 2 cut(s) 838, 997
HpyCH4V TGCA 7 cut(s) 275, 719, 1070, 1199, 1251, 1348, 1427
HpyF10VI GCNNNNNNNGC 4 cut(s) 443, 872, 1323, 1345
HpyF3I CTNAG 3 cut(s) 63, 377, 1122
HpySE526I ACGT 2 cut(s) 838, 997
Hsp92II CATG 5 cut(s) 511, 589, 940, 1330, 1455
KpnI GGTACC 1 cut(s) 819
Ksp22I TGATCA 2 cut(s) 1329, 1432
Kzo9I GATC 7 cut(s) 86, 144, 1028, 1110, 1245, 1329, 1432
LmnI GCTCC 1 cut(s) 1235
Lsp1109I GCAGC 6 cut(s) 209, 529, 975, 1105, 1183, 1360
LweI GCATC 4 cut(s) 993, 1079, 1208, 1326
MaeII ACGT 2 cut(s) 838, 997
MalI GATC 7 cut(s) 88, 146, 1030, 1112, 1247, 1331, 1434
MbiI CCGCTC 1 cut(s) 456
MboI GATC 7 cut(s) 86, 144, 1028, 1110, 1245, 1329, 1432
MboII GAAGA 7 cut(s) 130, 139, 194, 563, 740, 797, 1334
MfeI CAATTG 1 cut(s) 471
MflI RGATCY 1 cut(s) 86
MlyI GAGTC 1 cut(s) 962
MmeI TCCRAC 3 cut(s) 27, 769, 1283
Mph1103I ATGCAT 1 cut(s) 1429
MseI TTAA 6 cut(s) 101, 690, 899, 1212, 1268, 1386
MslI CAYNNNNRTG 3 cut(s) 506, 584, 941
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 6 cut(s) 443, 819, 1053, 1074, 1193, 1220
MspR9I CCNGG 5 cut(s) 194, 738, 820, 907, 1193
MunI CAATTG 1 cut(s) 471
Mva1269I GAATGC 1 cut(s) 1251
MvaI CCWGG 3 cut(s) 194, 738, 907
MvnI CGCG 2 cut(s) 1166, 1204
MwoI GCNNNNNNNGC 4 cut(s) 443, 872, 1323, 1345
NciI CCSGG 2 cut(s) 820, 1193
NdeI CATATG 2 cut(s) 245, 1429
NdeII GATC 7 cut(s) 86, 144, 1028, 1110, 1245, 1329, 1432
NlaIII CATG 5 cut(s) 511, 589, 940, 1330, 1455
NlaIV GGNNCC 5 cut(s) 88, 205, 339, 817, 911
NsiI ATGCAT 1 cut(s) 1429
PctI GAATGC 1 cut(s) 1251
PfeI GAWTC 3 cut(s) 685, 701, 1056
PflFI GACNNNGTC 1 cut(s) 188
PflMI CCANNNNNTGG 1 cut(s) 246
PinAI ACCGGT 1 cut(s) 1219
PkrI GCNGC 7 cut(s) 199, 544, 965, 1120, 1198, 1206, 1350
PleI GAGTC 1 cut(s) 962
PpsI GAGTC 1 cut(s) 962
PpuMI RGGWCCY 1 cut(s) 910
Psp5II RGGWCCY 1 cut(s) 910
Psp6I CCWGG 3 cut(s) 192, 736, 905
PspGI CCWGG 3 cut(s) 192, 736, 905
PspN4I GGNNCC 5 cut(s) 88, 205, 339, 817, 911
PspPI GGNCC 4 cut(s) 167, 203, 338, 910
PspPPI RGGWCCY 1 cut(s) 910
PstI CTGCAG 2 cut(s) 277, 1350
PstNI CAGNNNCTG 1 cut(s) 923
PsuI RGATCY 1 cut(s) 86
PsyI GACNNNGTC 1 cut(s) 188
PvuII CAGCTG 1 cut(s) 200
RsaI GTAC 8 cut(s) 286, 344, 665, 712, 742, 817, 1228, 1364
RsaNI GTAC 8 cut(s) 285, 343, 664, 711, 741, 816, 1227, 1363
RseI CAYNNNNRTG 3 cut(s) 506, 584, 941
SaqAI TTAA 6 cut(s) 101, 690, 899, 1212, 1268, 1386
SatI GCNGC 7 cut(s) 198, 543, 964, 1119, 1197, 1205, 1349
Sau3AI GATC 7 cut(s) 86, 144, 1028, 1110, 1245, 1329, 1432
Sau96I GGNCC 4 cut(s) 167, 203, 338, 910
ScaI AGTACT 1 cut(s) 712
SchI GAGTC 1 cut(s) 962
ScrFI CCNGG 5 cut(s) 194, 738, 820, 907, 1193
SfaNI GCATC 4 cut(s) 993, 1079, 1208, 1326
SfcI CTRYAG 3 cut(s) 273, 514, 1346
SinI GGWCC 4 cut(s) 167, 203, 338, 910
SmiMI CAYNNNNRTG 3 cut(s) 506, 584, 941
SsiI CCGC 2 cut(s) 456, 1204
StyD4I CCNGG 5 cut(s) 192, 736, 818, 905, 1191
StyI CCWWGG 2 cut(s) 220, 464
TaaI ACNGT 4 cut(s) 188, 649, 678, 1231
TaiI ACGT 2 cut(s) 841, 1000
TaqI TCGA 2 cut(s) 180, 1359
TatI WGTACW 3 cut(s) 663, 710, 1362
TauI GCSGC 1 cut(s) 1207
TfiI GAWTC 3 cut(s) 685, 701, 1056
Tru1I TTAA 6 cut(s) 101, 690, 899, 1212, 1268, 1386
Tru9I TTAA 6 cut(s) 101, 690, 899, 1212, 1268, 1386
TscAI CASTG 4 cut(s) 193, 681, 1236, 1442
TseI GCWGC 6 cut(s) 197, 542, 963, 1118, 1196, 1348
TspDTI ATGAA 6 cut(s) 17, 524, 568, 574, 1150, 1199
TspGWI ACGGA 1 cut(s) 330
TspRI CASTG 4 cut(s) 193, 681, 1236, 1442
Tth111I GACNNNGTC 1 cut(s) 188
Van91I CCANNNNNTGG 1 cut(s) 246
VpaK11BI GGWCC 4 cut(s) 167, 203, 338, 910
XapI RAATTY 1 cut(s) 1157
ZrmI AGTACT 1 cut(s) 712
Zsp2I ATGCAT 1 cut(s) 1429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.