AT5G05630

amino acid permease family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
1682301 .. 1684504
2204 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G05630.1

Sequence Viewer

Length: 1473 bp
ATGACTGAGCTTAGCTCTCCGAATCTTGACTCCGCCTCGCAGAAGCCAAGAATCTCCACCGAAAACCCTCCTCCTCCTCCTCCTCACATAAGCATTGGTGTCACCACCGGTGACCCTGCTACGTCTCCGGCGAGAACCGTCAACCAAATCAAGAAAATAACGGTACTGCCACTAGTTTTCCTGATATTCTACGAGGTCTCAGGCGGTCCGTTTGGGATTGAGGATAGTGTGAAAGCAGCAGGACCATTGTTAGCCATTGTTGGATTCATCGTCTTCCCTTTTATATGGAGTATCCCTGAAGCACTCATCACTGCTGAGATGGGAACAATGTTCCCGGAGAACGGTGGTTACGTCGTGTGGGTCACTTTAGCTATGGGACCTTATTGGGGGTTTCAACAAGGTTGGGTTAAATGGCTAAGTGGCGTTATAGACAACGCTCTTTATCCGATTCTCTTCCTTGACTATCTCAAATCAGGAATCCCGATACTCGGTAGTGGGATCCCTCGAGTCGCTGCGATTCTGGTGTTGACTGTAGCCTTGACTTACTTGAACTACAGGGGTTTAAGCATTGTTGGTGTAGCAGCTGTTCTTCTCGGCGTTTTCTCCATCCTTCCGTTTGTGGTGATGTCTTTCATGTCGATTCCAAAGCTTAAACCTTCGAGATGGCTTGTGGTTAGCAAGAAGATGAAAGGTGTTAACTGGAGCTTGTATCTCAATACACTCTTCTGGAATCTCAACTATTGGGATTCAGTTAGTACGCTTACGGGTGAAGTTGAAAACCCGAGTAAAACATTACCAAGAGCTCTGTTTTATGCTCTGCTTCTTGTTGTGTTTTCTTACATCTTCCCGGTTTTGACCGGGACAGGAGCTATAGCTCTTGATCAGAAGCTATGGACTGACGGGTATTTCGCTGATATCGGTAAAGTTATAGGAGGAGTTTGGTTGGGATGGTGGATTCAAGCTGCAGCTGCGACATCTAACATGGGAATGTTTTTGGCTGAAATGAGCAGTGATTCTTTTCAGCTACTTGGAATGGCTGAGAGGGGGATGCTTCCCGAGGTCTTTGCCAAGAGATCGCGCTACAGAACTCCATGGGTCGGGATACTGTTCTCGGCCTCTGGTGTGATTATCTTGTCATGGTTAAGCTTTCAAGAGATTGTGGCTGCAGAGAATCTGTTATACTGTTTTGGAATGGTTTTGGAATTTATTACGTTTGTGAGGTTAAGGATGAAATATCCAGCTGCCTCAAGACCGTTCAAGATACCTGTAGGGGTTTTGGGATCAGTCCTCATGTGCATTCCTCCAACAGTACTGATCGGTGTCATCATGGCATTTACTAACCTGAAAGTTGCGCTGGTGAGCCTTGCAGCTATAGTGATTGGGCTTGTGTTGCAACCTTGTCTTAAGCAAGTGGAGAAAAAGGGATGGCTCAAGTTCTCAACAAGTTCTCACCTACCAAACCTGATGGAGTAA

Protein Analysis

490

Amino Acids

53.69

Weight (kDa)

9.21

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 56 - 438 8.1e-33 Amino acid permease
AA_permease PF00324 75 - 447 2.3e-18 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1078
AciI CCGC 2 cut(s) 33, 204
AclWI GGATC 3 cut(s) 493, 506, 1288
AcsI RAATTY 1 cut(s) 1202
AcuI CTGAAG 1 cut(s) 318
AfaI GTAC 3 cut(s) 165, 757, 1311
AfiI CCNNNNNNNGG 4 cut(s) 341, 386, 488, 1097
AflII CTTAAG 1 cut(s) 1403
AgeI ACCGGT 1 cut(s) 107
AgsI TTSAA 6 cut(s) 395, 550, 776, 959, 1151, 1258
AhlI ACTAGT 1 cut(s) 172
Alw21I GWGCWC 1 cut(s) 805
Alw26I GTCTC 2 cut(s) 129, 202
AlwI GGATC 3 cut(s) 493, 506, 1288
Ama87I CYCGRG 3 cut(s) 504, 781, 1055
AoxI GGCC 1 cut(s) 1113
ApeKI GCWGC 9 cut(s) 236, 512, 581, 962, 965, 968, 1163, 1241, 1367
ApoI RAATTY 1 cut(s) 1202
ArsI GACNNNNNNTTYG 2 cut(s) 890, 922
AsiGI ACCGGT 1 cut(s) 107
AspLEI GCGC 2 cut(s) 1080, 1354
AspS9I GGNCC 3 cut(s) 206, 242, 377
AsuC2I CCSGG 3 cut(s) 335, 848, 859
AsuHPI GGTGA 6 cut(s) 94, 122, 634, 779, 1369, 1442
AvaI CYCGRG 3 cut(s) 504, 781, 1055
AvaII GGWCC 3 cut(s) 206, 242, 377
BamHI GGATCC 1 cut(s) 498
BanII GRGCYC 1 cut(s) 805
BbsI GAAGAC 1 cut(s) 265
Bbv12I GWGCWC 1 cut(s) 805
BbvI GCAGC 9 cut(s) 248, 499, 593, 949, 955, 977, 1150, 1228, 1379
BccI CCATC 6 cut(s) 313, 614, 657, 942, 1419, 1459
BcgI CGANNNNNNTGC 2 cut(s) 1046, 1080
BciVI GTATCC 2 cut(s) 302, 1095
BclI TGATCA 1 cut(s) 880
BcnI CCSGG 3 cut(s) 335, 848, 859
BcoDI GTCTC 2 cut(s) 129, 202
BcuI ACTAGT 1 cut(s) 172
BfaI CTAG 1 cut(s) 173
BfmI CTRYAG 8 cut(s) 531, 553, 870, 963, 1081, 1164, 1266, 1371
BfrI CTTAAG 1 cut(s) 1403
BfuI GTATCC 2 cut(s) 302, 1095
BisI GCNGC 9 cut(s) 237, 513, 582, 963, 966, 969, 1164, 1242, 1368
BlpI GCTNAGC 1 cut(s) 11
BlsI GCNGC 9 cut(s) 238, 514, 583, 964, 967, 970, 1165, 1243, 1369
BmcAI AGTACT 1 cut(s) 1311
Bme1390I CCNGG 3 cut(s) 335, 848, 859
Bme18I GGWCC 3 cut(s) 206, 242, 377
BmeT110I CYCGRG 3 cut(s) 504, 781, 1055
BmgT120I GGNCC 3 cut(s) 206, 242, 377
BmiI GGNNCC 2 cut(s) 378, 500
BmrFI CCNGG 3 cut(s) 335, 848, 859
BmsI GCATC 1 cut(s) 1038
BpiI GAAGAC 1 cut(s) 265
BplI GAGNNNNNCTC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 721
Bpu1102I GCTNAGC 1 cut(s) 11
BpuEI CTTGAG 2 cut(s) 1231, 1415
BpuMI CCSGG 3 cut(s) 335, 848, 859
BsaI GGTCTC 1 cut(s) 202
BsaJI CCNNGG 2 cut(s) 1056, 1091
BsaWI WCCGGW 1 cut(s) 107
Bsc4I CCNNNNNNNGG 4 cut(s) 341, 386, 488, 1097
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 704
BseDI CCNNGG 2 cut(s) 1056, 1091
BseGI GGATG 5 cut(s) 606, 953, 1053, 1233, 1430
BseLI CCNNNNNNNGG 4 cut(s) 341, 386, 488, 1097
BseMII CTCAG 3 cut(s) 213, 306, 1029
BseNI ACTGG 1 cut(s) 704
BseRI GAGGAG 6 cut(s) 60, 63, 66, 69, 72, 948
BseXI GCAGC 9 cut(s) 248, 499, 593, 949, 955, 977, 1150, 1228, 1379
Bsh1236I CGCG 1 cut(s) 1078
BshFI GGCC 1 cut(s) 1115
BshTI ACCGGT 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 805
BsiHKCI CYCGRG 3 cut(s) 504, 781, 1055
BsiSI CCGG 5 cut(s) 108, 128, 335, 848, 858
BslFI GGGAC 2 cut(s) 390, 874
BslI CCNNNNNNNGG 4 cut(s) 341, 386, 488, 1097
BsmAI GTCTC 2 cut(s) 129, 202
BsmBI CGTCTC 1 cut(s) 129
BsmFI GGGAC 2 cut(s) 390, 874
BsmI GAATGC 1 cut(s) 1296
BsnI GGCC 1 cut(s) 1115
Bso31I GGTCTC 1 cut(s) 202
BsoBI CYCGRG 3 cut(s) 504, 781, 1055
Bsp1286I GDGCHC 1 cut(s) 805
Bsp143I GATC 5 cut(s) 498, 880, 1073, 1280, 1314
Bsp1720I GCTNAGC 1 cut(s) 11
Bsp19I CCATGG 1 cut(s) 1091
BspACI CCGC 2 cut(s) 33, 204
BspANI GGCC 1 cut(s) 1115
BspCNI CTCAG 3 cut(s) 212, 307, 1030
BspFNI CGCG 1 cut(s) 1078
BspLI GGNNCC 2 cut(s) 378, 500
BspMAI CTGCAG 2 cut(s) 967, 1168
BspPI GGATC 3 cut(s) 493, 506, 1288
BspTI CTTAAG 1 cut(s) 1403
BspTNI GGTCTC 1 cut(s) 202
BsrFI RCCGGY 1 cut(s) 107
BsrI ACTGG 1 cut(s) 704
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 2 cut(s) 1056, 1091
BssMI GATC 5 cut(s) 498, 880, 1073, 1280, 1314
BssT1I CCWWGG 1 cut(s) 1091
Bst4CI ACNGT 8 cut(s) 139, 163, 344, 532, 1107, 1184, 1254, 1309
Bst6I CTCTTC 2 cut(s) 458, 728
BstAFI CTTAAG 1 cut(s) 1403
BstDEI CTNAG 6 cut(s) 6, 11, 199, 315, 416, 1038
BstDSI CCRYGG 1 cut(s) 1091
BstEII GGTNACC 1 cut(s) 110
BstF5I GGATG 5 cut(s) 606, 953, 1053, 1233, 1430
BstFNI CGCG 1 cut(s) 1078
BstHHI GCGC 2 cut(s) 1080, 1354
BstKTI GATC 5 cut(s) 501, 883, 1076, 1283, 1317
BstMAI GTCTC 2 cut(s) 129, 202
BstMBI GATC 5 cut(s) 498, 880, 1073, 1280, 1314
BstMWI GCNNNNNNNGC 2 cut(s) 968, 1390
BstPI GGTNACC 1 cut(s) 110
BstSCI CCNGG 3 cut(s) 333, 846, 857
BstSFI CTRYAG 8 cut(s) 531, 553, 870, 963, 1081, 1164, 1266, 1371
BstUI CGCG 1 cut(s) 1078
BstV1I GCAGC 9 cut(s) 248, 499, 593, 949, 955, 977, 1150, 1228, 1379
BstV2I GAAGAC 1 cut(s) 265
BstX2I RGATCY 1 cut(s) 498
BstYI RGATCY 1 cut(s) 498
BsuI GTATCC 2 cut(s) 302, 1095
BsuRI GGCC 1 cut(s) 1115
BtgI CCRYGG 1 cut(s) 1091
BtsCI GGATG 5 cut(s) 606, 953, 1053, 1233, 1430
BtsI GCAGTG 2 cut(s) 309, 1015
BtsIMutI CAGTG 2 cut(s) 309, 1015
CfoI GCGC 2 cut(s) 1080, 1354
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 3 cut(s) 206, 242, 377
CpoI CGGWCCG 1 cut(s) 206
Csp6I GTAC 3 cut(s) 164, 756, 1310
CspAI ACCGGT 1 cut(s) 107
CspI CGGWCCG 1 cut(s) 206
CviAII CATG 6 cut(s) 634, 982, 1092, 1137, 1291, 1327
CviQI GTAC 3 cut(s) 164, 756, 1310
DdeI CTNAG 6 cut(s) 6, 11, 199, 315, 416, 1038
DpnI GATC 5 cut(s) 500, 882, 1075, 1282, 1316
DpnII GATC 5 cut(s) 498, 880, 1073, 1280, 1314
Eam1104I CTCTTC 2 cut(s) 458, 728
EarI CTCTTC 2 cut(s) 458, 728
EciI GGCGGA 1 cut(s) 22
Ecl136II GAGCTC 1 cut(s) 803
Eco130I CCWWGG 1 cut(s) 1091
Eco24I GRGCYC 1 cut(s) 805
Eco31I GGTCTC 1 cut(s) 202
Eco32I GATATC 1 cut(s) 916
Eco47I GGWCC 3 cut(s) 206, 242, 377
Eco53kI GAGCTC 1 cut(s) 803
Eco57I CTGAAG 1 cut(s) 318
Eco88I CYCGRG 3 cut(s) 504, 781, 1055
Eco91I GGTNACC 1 cut(s) 110
EcoICRI GAGCTC 1 cut(s) 803
EcoO109I RGGNCCY 1 cut(s) 377
EcoO65I GGTNACC 1 cut(s) 110
EcoRV GATATC 1 cut(s) 916
EcoT14I CCWWGG 1 cut(s) 1091
EcoT38I GRGCYC 1 cut(s) 805
ErhI CCWWGG 1 cut(s) 1091
Esp3I CGTCTC 1 cut(s) 129
FaeI CATG 6 cut(s) 637, 985, 1095, 1140, 1294, 1330
FaqI GGGAC 2 cut(s) 390, 874
FatI CATG 6 cut(s) 633, 981, 1091, 1136, 1290, 1326
FbaI TGATCA 1 cut(s) 880
Fnu4HI GCNGC 9 cut(s) 237, 513, 582, 963, 966, 969, 1164, 1242, 1368
FokI GGATG 5 cut(s) 593, 960, 1060, 1240, 1437
FriOI GRGCYC 1 cut(s) 805
Fsp4HI GCNGC 9 cut(s) 237, 513, 582, 963, 966, 969, 1164, 1242, 1368
FspBI CTAG 1 cut(s) 173
GlaI GCGC 2 cut(s) 1079, 1353
GluI GCNGC 9 cut(s) 237, 513, 582, 963, 966, 969, 1164, 1242, 1368
GsuI CTGGAG 1 cut(s) 721
HaeIII GGCC 1 cut(s) 1115
HapII CCGG 5 cut(s) 108, 128, 335, 848, 858
HhaI GCGC 2 cut(s) 1080, 1354
Hin1II CATG 6 cut(s) 637, 985, 1095, 1140, 1294, 1330
Hin6I GCGC 2 cut(s) 1078, 1352
HinP1I GCGC 2 cut(s) 1078, 1352
HincII GTYRAC 3 cut(s) 142, 528, 697
HindII GTYRAC 3 cut(s) 142, 528, 697
HindIII AAGCTT 2 cut(s) 647, 1144
HpaI GTTAAC 1 cut(s) 697
HpaII CCGG 5 cut(s) 108, 128, 335, 848, 858
HphI GGTGA 6 cut(s) 94, 122, 634, 779, 1369, 1442
Hpy166II GTNNAC 3 cut(s) 142, 528, 697
Hpy188I TCNGA 3 cut(s) 21, 447, 885
Hpy8I GTNNAC 3 cut(s) 142, 528, 697
Hpy99I CGWCG 1 cut(s) 356
HpyAV CCTTC 2 cut(s) 620, 666
HpyCH4III ACNGT 8 cut(s) 139, 163, 344, 532, 1107, 1184, 1254, 1309
HpyCH4IV ACGT 3 cut(s) 122, 351, 1211
HpyCH4V TGCA 5 cut(s) 965, 1166, 1296, 1367, 1393
HpyF10VI GCNNNNNNNGC 2 cut(s) 968, 1390
HpyF3I CTNAG 6 cut(s) 6, 11, 199, 315, 416, 1038
HpySE526I ACGT 3 cut(s) 122, 351, 1211
Hsp92II CATG 6 cut(s) 637, 985, 1095, 1140, 1294, 1330
HspAI GCGC 2 cut(s) 1078, 1352
Ksp22I TGATCA 1 cut(s) 880
KspAI GTTAAC 1 cut(s) 697
Kzo9I GATC 5 cut(s) 498, 880, 1073, 1280, 1314
LmnI GCTCC 2 cut(s) 702, 866
Lsp1109I GCAGC 9 cut(s) 248, 499, 593, 949, 955, 977, 1150, 1228, 1379
LweI GCATC 1 cut(s) 1038
MaeI CTAG 1 cut(s) 173
MaeII ACGT 3 cut(s) 122, 351, 1211
MaeIII GTNAC 4 cut(s) 100, 110, 347, 361
MalI GATC 5 cut(s) 500, 882, 1075, 1282, 1316
MboI GATC 5 cut(s) 498, 880, 1073, 1280, 1314
MboII GAAGA 6 cut(s) 265, 445, 581, 694, 715, 835
MflI RGATCY 1 cut(s) 498
MhlI GDGCHC 1 cut(s) 805
MluCI AATT 1 cut(s) 1202
MlyI GAGTC 2 cut(s) 23, 516
MmeI TCCRAC 2 cut(s) 241, 1328
MseI TTAA 7 cut(s) 408, 563, 651, 696, 1142, 1223, 1404
MslI CAYNNNNRTG 1 cut(s) 986
MspA1I CMGCKG 3 cut(s) 584, 968, 1241
MspCI CTTAAG 1 cut(s) 1403
MspI CCGG 5 cut(s) 108, 128, 335, 848, 858
MspR9I CCNGG 3 cut(s) 335, 848, 859
Mva1269I GAATGC 1 cut(s) 1296
MvnI CGCG 1 cut(s) 1078
MwoI GCNNNNNNNGC 2 cut(s) 968, 1390
NciI CCSGG 3 cut(s) 335, 848, 859
NcoI CCATGG 1 cut(s) 1091
NdeII GATC 5 cut(s) 498, 880, 1073, 1280, 1314
NlaIII CATG 6 cut(s) 637, 985, 1095, 1140, 1294, 1330
NlaIV GGNNCC 2 cut(s) 378, 500
NmeAIII GCCGAG 2 cut(s) 573, 1091
NmuCI GTSAC 3 cut(s) 100, 110, 361
PaeR7I CTCGAG 1 cut(s) 504
PcsI WCGNNNNNNNCGW 2 cut(s) 128, 348
PctI GAATGC 1 cut(s) 1296
PfoI TCCNGGA 1 cut(s) 333
PinAI ACCGGT 1 cut(s) 107
PkrI GCNGC 9 cut(s) 238, 514, 583, 964, 967, 970, 1165, 1243, 1369
PleI GAGTC 2 cut(s) 23, 515
PpsI GAGTC 2 cut(s) 23, 515
PpuMI RGGWCCY 1 cut(s) 377
Psp124BI GAGCTC 1 cut(s) 805
Psp5II RGGWCCY 1 cut(s) 377
PspEI GGTNACC 1 cut(s) 110
PspN4I GGNNCC 2 cut(s) 378, 500
PspPI GGNCC 3 cut(s) 206, 242, 377
PspPPI RGGWCCY 1 cut(s) 377
PspXI VCTCGAGB 1 cut(s) 504
PsrI GAACNNNNNNTAC 4 cut(s) 332, 364, 570, 602
PstI CTGCAG 2 cut(s) 967, 1168
PsuI RGATCY 1 cut(s) 498
PvuII CAGCTG 3 cut(s) 584, 968, 1241
RsaI GTAC 3 cut(s) 165, 757, 1311
RsaNI GTAC 3 cut(s) 164, 756, 1310
RseI CAYNNNNRTG 1 cut(s) 986
Rsr2I CGGWCCG 1 cut(s) 206
RsrII CGGWCCG 1 cut(s) 206
SacI GAGCTC 1 cut(s) 805
SaqAI TTAA 7 cut(s) 408, 563, 651, 696, 1142, 1223, 1404
SatI GCNGC 9 cut(s) 237, 513, 582, 963, 966, 969, 1164, 1242, 1368
Sau3AI GATC 5 cut(s) 498, 880, 1073, 1280, 1314
Sau96I GGNCC 3 cut(s) 206, 242, 377
ScaI AGTACT 1 cut(s) 1311
SchI GAGTC 2 cut(s) 23, 516
ScrFI CCNGG 3 cut(s) 335, 848, 859
SduI GDGCHC 1 cut(s) 805
SfaNI GCATC 1 cut(s) 1038
SfcI CTRYAG 8 cut(s) 531, 553, 870, 963, 1081, 1164, 1266, 1371
Sfr274I CTCGAG 1 cut(s) 504
SgrAI CRCCGGYG 1 cut(s) 107
SinI GGWCC 3 cut(s) 206, 242, 377
SlaI CTCGAG 1 cut(s) 504
SmiMI CAYNNNNRTG 1 cut(s) 986
SmlI CTYRAG 4 cut(s) 504, 1246, 1403, 1430
SmoI CTYRAG 4 cut(s) 504, 1246, 1403, 1430
SpeI ACTAGT 1 cut(s) 172
Sse9I AATT 1 cut(s) 1202
SsiI CCGC 2 cut(s) 33, 204
SspMI CTAG 1 cut(s) 173
SstI GAGCTC 1 cut(s) 805
StyD4I CCNGG 3 cut(s) 333, 846, 857
StyI CCWWGG 1 cut(s) 1091
TaaI ACNGT 8 cut(s) 139, 163, 344, 532, 1107, 1184, 1254, 1309
TaiI ACGT 3 cut(s) 125, 354, 1214
TaqI TCGA 3 cut(s) 505, 638, 659
TasI AATT 1 cut(s) 1202
TatI WGTACW 1 cut(s) 1309
Tru1I TTAA 7 cut(s) 408, 563, 651, 696, 1142, 1223, 1404
Tru9I TTAA 7 cut(s) 408, 563, 651, 696, 1142, 1223, 1404
TscAI CASTG 2 cut(s) 316, 1015
TseFI GTSAC 3 cut(s) 100, 110, 361
TseI GCWGC 9 cut(s) 236, 512, 581, 962, 965, 968, 1163, 1241, 1367
Tsp45I GTSAC 3 cut(s) 100, 110, 361
TspDTI ATGAA 4 cut(s) 256, 622, 701, 1244
TspGWI ACGGA 2 cut(s) 198, 603
TspRI CASTG 2 cut(s) 316, 1015
Vha464I CTTAAG 1 cut(s) 1403
VpaK11BI GGWCC 3 cut(s) 206, 242, 377
XapI RAATTY 1 cut(s) 1202
XhoI CTCGAG 1 cut(s) 504
XspI CTAG 1 cut(s) 173
ZrmI AGTACT 1 cut(s) 1311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.