Rh7BG445400

polyamine transporter

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
51943786 .. 51946092
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG445400.1

Sequence Viewer

Length: 1263 bp
ATGGGAGAGCACAACAATCCCGAATGTGTTGCAGTTAGTGAAGCACAATCCCCTAGGGTAAATAACTTCAAGAAAGTCTCAGTTCTGCCCCTTGTCTTCCTCATTTTCTATGAGGTATCTGGGGGTCCATTTGGTATGGAGGAAAGTGTTCAGGCTGCCGGTCCCCTTCTAGCGCTTCTCGGGTTCTTGGTCTTTCCATTCATTTGGAGCGTTCCTGAGGCCTTGATTACTGCAGAGATGGGTACCATGTTCCCTGTGAATGGGGGTTACGTGGTTTGGGTTTCTTCGGCCCTGGGTCCATTTTGGGGGTTTCAACAAGGATGGCTGAAATGGTTAAGTGGAGTCATTGATAATGCTTTGTACCCAGTTCTGTTTTTGGACTACTTGAAGTCAGCAATACCAGCTTTAGGCGGTGGACTTCCAAGAATCGTGGCAGTGTTAGCTCTGACATTGTTCCTCACTTACTTAAACTATAGGGGTTTAACCATTGTGGGATGGGTTGCTGTACTTTTAGGGATTTGCTCAATCATTCCTTTTGTGGTTATGGGACTTGTGGCAATTCCCAAGTTGGAGCCTTCAAGATGGTTAGTGGTGAGTCTACATAATGTGGACTGGAATTTGTATTTGAACACTCTCTTTTGGAATTTGAACTATTGGGATTCTGTAAGTACACTTGCCGGAGAGGTGGAGAACCAAAAGAAAACTCTCCCCAAGGCTCTTTTTTATGCGTTCATTTTGGTTGTTGTTGGATATTTCTTCCCCCTTTTAATTGGTACTGGGGCTGTTCCACTTGATCGTGAGTTGTGGACTGATGGTTACTTCTCTGATATTGCAAAAATTGTTGGGGGAGTTTGGTTGAGATGTTGGATCCAAGGGGCTGCAGCGATGTCAAATATGGGGATGTTTGTGGCTGAAATGAGCAGCGACTCTTTTCAACTTCTTGGGATGGCAGAAAGAGGGATGTTGCCTGAGTTCTTTGGTAAGCGGTCTCGTTATGGAACCCCAGTCATTGGCATTATGTTCTCAGCTTCCGGAGTCCTTTTGCTATCTTGGCTAAGCTTTCAAGAGATTGTAGCTGCAGAAAACTTCTTGTACTGTGTTGGAATGATTTTGGAGTTCATAGCATTTATACTATTACGGGTGAAGCATCCAGCTGCATCTCGGCCATTCAAGATTCCTGTTGGAACAGTTGGAACCATTCTTTTGTGCATTCCGCCTACCCTGCTAATTGGTGTTTTGTTGGCTCTTTCTGAATGGTTGTGA

Protein Analysis

420

Amino Acids

46.21

Weight (kDa)

5.51

Isoelectric Point (pI)

35.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 29 - 404 4.8e-40 Amino acid permease
AA_permease PF00324 45 - 389 1.2e-21 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 242
AccB7I CCANNNNNTGG 1 cut(s) 1010
AccI GTMKAC 1 cut(s) 598
AccIII TCCGGA 1 cut(s) 1031
AciI CCGC 3 cut(s) 411, 985, 1214
AclWI GGATC 2 cut(s) 862, 875
AcoI YGGCCR 1 cut(s) 1163
AcsI RAATTY 2 cut(s) 616, 643
AfaI GTAC 6 cut(s) 244, 362, 507, 670, 775, 1094
AfeI AGCGCT 1 cut(s) 174
AfiI CCNNNNNNNGG 4 cut(s) 260, 305, 407, 1010
AgsI TTSAA 9 cut(s) 70, 314, 388, 579, 628, 649, 935, 1064, 1171
AjnI CCWGG 1 cut(s) 291
AluBI AGCT 6 cut(s) 404, 443, 1028, 1059, 1076, 1154
AluI AGCT 6 cut(s) 404, 443, 1028, 1059, 1076, 1154
Alw21I GWGCWC 1 cut(s) 12
Alw26I GTCTC 2 cut(s) 82, 993
AlwI GGATC 2 cut(s) 862, 875
Ama87I CYCGRG 1 cut(s) 179
Aor13HI TCCGGA 1 cut(s) 1031
Aor51HI AGCGCT 1 cut(s) 174
AoxI GGCC 3 cut(s) 219, 288, 1163
ApeKI GCWGC 6 cut(s) 155, 878, 881, 921, 1076, 1154
ApoI RAATTY 2 cut(s) 616, 643
Asp700I GAANNNNTTC 1 cut(s) 147
Asp718I GGTACC 1 cut(s) 242
AspA2I CCTAGG 1 cut(s) 53
AspLEI GCGC 1 cut(s) 175
AspS9I GGNCC 4 cut(s) 125, 161, 289, 296
AsuHPI GGTGA 2 cut(s) 604, 1153
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 3 cut(s) 125, 161, 296
AvrII CCTAGG 1 cut(s) 53
AxyI CCTNAGG 1 cut(s) 216
BamHI GGATCC 1 cut(s) 867
BanI GGYRCC 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 12
BbvI GCAGC 6 cut(s) 142, 865, 893, 933, 1063, 1141
BccI CCATC 6 cut(s) 232, 315, 489, 576, 806, 940
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BciT130I CCWGG 1 cut(s) 293
BcoDI GTCTC 2 cut(s) 82, 993
BfaI CTAG 2 cut(s) 54, 170
BfmI CTRYAG 4 cut(s) 231, 472, 879, 1077
BfoI RGCGCY 1 cut(s) 176
BisI GCNGC 6 cut(s) 156, 879, 882, 922, 1077, 1155
BlnI CCTAGG 1 cut(s) 53
BlpI GCTNAGC 1 cut(s) 1055
BlsI GCNGC 6 cut(s) 157, 880, 883, 923, 1078, 1156
Bme1390I CCNGG 1 cut(s) 293
Bme18I GGWCC 3 cut(s) 125, 161, 296
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 4 cut(s) 125, 161, 289, 296
BmiI GGNNCC 8 cut(s) 126, 163, 244, 297, 573, 869, 1000, 1195
BmrFI CCNGG 1 cut(s) 293
BmrI ACTGGG 3 cut(s) 359, 786, 998
BmsI GCATC 2 cut(s) 1156, 1166
BmuI ACTGGG 3 cut(s) 359, 786, 998
BpiI GAAGAC 1 cut(s) 88
Bpu1102I GCTNAGC 1 cut(s) 1055
BsaAI YACGTR 1 cut(s) 271
BsaI GGTCTC 1 cut(s) 993
BsaJI CCNNGG 5 cut(s) 53, 291, 292, 711, 871
BsaWI WCCGGW 1 cut(s) 1031
Bsc4I CCNNNNNNNGG 4 cut(s) 260, 305, 407, 1010
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 4 cut(s) 365, 617, 781, 1004
Bse21I CCTNAGG 1 cut(s) 216
BseAI TCCGGA 1 cut(s) 1031
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 5 cut(s) 53, 291, 292, 711, 871
BseGI GGATG 6 cut(s) 326, 500, 906, 951, 966, 1147
BseLI CCNNNNNNNGG 4 cut(s) 260, 305, 407, 1010
BseMII CTCAG 4 cut(s) 93, 207, 960, 1038
BseNI ACTGG 4 cut(s) 365, 617, 781, 1004
BseXI GCAGC 6 cut(s) 142, 865, 893, 933, 1063, 1141
BshFI GGCC 3 cut(s) 221, 290, 1165
BshNI GGYRCC 1 cut(s) 242
BsiHKAI GWGCWC 1 cut(s) 12
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 3 cut(s) 159, 678, 1032
BslFI GGGAC 2 cut(s) 147, 561
BslI CCNNNNNNNGG 4 cut(s) 260, 305, 407, 1010
BsmAI GTCTC 2 cut(s) 82, 993
BsmFI GGGAC 2 cut(s) 147, 561
BsmI GAATGC 1 cut(s) 1209
BsnI GGCC 3 cut(s) 221, 290, 1165
Bso31I GGTCTC 1 cut(s) 993
BsoBI CYCGRG 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 12
Bsp13I TCCGGA 1 cut(s) 1031
Bsp143I GATC 2 cut(s) 793, 867
Bsp1720I GCTNAGC 1 cut(s) 1055
BspACI CCGC 3 cut(s) 411, 985, 1214
BspANI GGCC 3 cut(s) 221, 290, 1165
BspCNI CTCAG 4 cut(s) 92, 208, 961, 1037
BspEI TCCGGA 1 cut(s) 1031
BspLI GGNNCC 8 cut(s) 126, 163, 244, 297, 573, 869, 1000, 1195
BspMAI CTGCAG 3 cut(s) 235, 883, 1081
BspPI GGATC 2 cut(s) 862, 875
BspT107I GGYRCC 1 cut(s) 242
BspTNI GGTCTC 1 cut(s) 993
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 4 cut(s) 365, 617, 781, 1004
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 5 cut(s) 53, 291, 292, 711, 871
BssMI GATC 2 cut(s) 793, 867
BssT1I CCWWGG 3 cut(s) 53, 711, 871
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 2 cut(s) 1097, 1189
BstBAI YACGTR 1 cut(s) 271
BstDEI CTNAG 5 cut(s) 79, 216, 969, 1024, 1055
BstF5I GGATG 6 cut(s) 326, 500, 906, 951, 966, 1147
BstH2I RGCGCY 1 cut(s) 176
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 2 cut(s) 796, 870
BstMAI GTCTC 2 cut(s) 82, 993
BstMBI GATC 2 cut(s) 793, 867
BstMWI GCNNNNNNNGC 4 cut(s) 401, 440, 1051, 1222
BstNI CCWGG 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 291
BstSFI CTRYAG 4 cut(s) 231, 472, 879, 1077
BstV1I GCAGC 6 cut(s) 142, 865, 893, 933, 1063, 1141
BstV2I GAAGAC 1 cut(s) 88
BstX2I RGATCY 1 cut(s) 867
BstXI CCANNNNNNTGG 1 cut(s) 204
BstYI RGATCY 1 cut(s) 867
Bsu36I CCTNAGG 1 cut(s) 216
BsuRI GGCC 3 cut(s) 221, 290, 1165
BtgZI GCGATG 1 cut(s) 899
BtsCI GGATG 6 cut(s) 326, 500, 906, 951, 966, 1147
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 1 cut(s) 441
CfoI GCGC 1 cut(s) 175
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 4 cut(s) 125, 161, 289, 296
Csp6I GTAC 6 cut(s) 243, 361, 506, 669, 774, 1093
CspCI CAANNNNNGTGG 2 cut(s) 411, 446
CviAII CATG 1 cut(s) 247
CviQI GTAC 6 cut(s) 243, 361, 506, 669, 774, 1093
DdeI CTNAG 5 cut(s) 79, 216, 969, 1024, 1055
DpnI GATC 2 cut(s) 795, 869
DpnII GATC 2 cut(s) 793, 867
EaeI YGGCCR 1 cut(s) 1163
EciI GGCGGA 1 cut(s) 1203
Eco130I CCWWGG 3 cut(s) 53, 711, 871
Eco147I AGGCCT 1 cut(s) 221
Eco31I GGTCTC 1 cut(s) 993
Eco47I GGWCC 3 cut(s) 125, 161, 296
Eco47III AGCGCT 1 cut(s) 174
Eco81I CCTNAGG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 291
EcoT14I CCWWGG 3 cut(s) 53, 711, 871
ErhI CCWWGG 3 cut(s) 53, 711, 871
FaeI CATG 1 cut(s) 250
FaqI GGGAC 2 cut(s) 147, 561
FatI CATG 1 cut(s) 246
FblI GTMKAC 1 cut(s) 598
Fnu4HI GCNGC 6 cut(s) 156, 879, 882, 922, 1077, 1155
FokI GGATG 6 cut(s) 333, 507, 913, 958, 973, 1134
Fsp4HI GCNGC 6 cut(s) 156, 879, 882, 922, 1077, 1155
FspBI CTAG 2 cut(s) 54, 170
GlaI GCGC 1 cut(s) 174
GluI GCNGC 6 cut(s) 156, 879, 882, 922, 1077, 1155
HaeII RGCGCY 1 cut(s) 176
HaeIII GGCC 3 cut(s) 221, 290, 1165
HapII CCGG 3 cut(s) 159, 678, 1032
HhaI GCGC 1 cut(s) 175
Hin1II CATG 1 cut(s) 250
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HindIII AAGCTT 1 cut(s) 1057
HinfI GANTC 7 cut(s) 342, 426, 595, 659, 926, 1035, 1174
HpaII CCGG 3 cut(s) 159, 678, 1032
HphI GGTGA 2 cut(s) 604, 1153
Hpy166II GTNNAC 5 cut(s) 416, 599, 610, 671, 807
Hpy188I TCNGA 3 cut(s) 447, 826, 1252
Hpy188III TCNNGA 8 cut(s) 20, 70, 215, 579, 797, 1032, 1064, 1171
Hpy8I GTNNAC 5 cut(s) 416, 599, 610, 671, 807
HpyAV CCTTC 2 cut(s) 176, 585
HpyCH4III ACNGT 2 cut(s) 1097, 1189
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 7 cut(s) 32, 233, 833, 881, 1079, 1157, 1209
HpyF10VI GCNNNNNNNGC 4 cut(s) 401, 440, 1051, 1222
HpyF3I CTNAG 5 cut(s) 79, 216, 969, 1024, 1055
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 1 cut(s) 250
HspAI GCGC 1 cut(s) 173
Kpn2I TCCGGA 1 cut(s) 1031
KpnI GGTACC 1 cut(s) 246
Kzo9I GATC 2 cut(s) 793, 867
LmnI GCTCC 2 cut(s) 207, 571
Lsp1109I GCAGC 6 cut(s) 142, 865, 893, 933, 1063, 1141
LweI GCATC 2 cut(s) 1156, 1166
MaeI CTAG 2 cut(s) 54, 170
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 2 cut(s) 266, 815
MalI GATC 2 cut(s) 795, 869
MboI GATC 2 cut(s) 793, 867
MboII GAAGA 3 cut(s) 88, 276, 748
MflI RGATCY 1 cut(s) 867
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 6 cut(s) 558, 616, 643, 768, 837, 1227
MlyI GAGTC 4 cut(s) 351, 604, 920, 1044
MmeI TCCRAC 6 cut(s) 549, 727, 845, 1081, 1162, 1171
MnlI CCTC 7 cut(s) 106, 110, 133, 211, 467, 676, 950
MroI TCCGGA 1 cut(s) 1031
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 4 cut(s) 335, 467, 482, 767
MspA1I CMGCKG 1 cut(s) 1154
MspI CCGG 3 cut(s) 159, 678, 1032
MspR9I CCNGG 1 cut(s) 293
Mva1269I GAATGC 1 cut(s) 1209
MvaI CCWGG 1 cut(s) 293
MwoI GCNNNNNNNGC 4 cut(s) 401, 440, 1051, 1222
NdeII GATC 2 cut(s) 793, 867
NlaIII CATG 1 cut(s) 250
NlaIV GGNNCC 8 cut(s) 126, 163, 244, 297, 573, 869, 1000, 1195
NmeAIII GCCGAG 1 cut(s) 1141
PasI CCCWGGG 1 cut(s) 292
PceI AGGCCT 1 cut(s) 221
PctI GAATGC 1 cut(s) 1209
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 3 cut(s) 426, 659, 1174
PflMI CCANNNNNTGG 1 cut(s) 1010
PkrI GCNGC 6 cut(s) 157, 880, 883, 923, 1078, 1156
PleI GAGTC 4 cut(s) 350, 603, 920, 1043
PpsI GAGTC 4 cut(s) 350, 603, 920, 1043
Ppu21I YACGTR 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 8 cut(s) 126, 163, 244, 297, 573, 869, 1000, 1195
PspPI GGNCC 4 cut(s) 125, 161, 289, 296
PstI CTGCAG 3 cut(s) 235, 883, 1081
PsuI RGATCY 1 cut(s) 867
PvuII CAGCTG 1 cut(s) 1154
RsaI GTAC 6 cut(s) 244, 362, 507, 670, 775, 1094
RsaNI GTAC 6 cut(s) 243, 361, 506, 669, 774, 1093
SaqAI TTAA 4 cut(s) 335, 467, 482, 767
SatI GCNGC 6 cut(s) 156, 879, 882, 922, 1077, 1155
Sau3AI GATC 2 cut(s) 793, 867
Sau96I GGNCC 4 cut(s) 125, 161, 289, 296
SchI GAGTC 4 cut(s) 351, 604, 920, 1044
ScrFI CCNGG 1 cut(s) 293
SduI GDGCHC 1 cut(s) 12
SetI ASST 9 cut(s) 117, 273, 406, 445, 687, 1030, 1061, 1078, 1156
SfaNI GCATC 2 cut(s) 1156, 1166
SfcI CTRYAG 4 cut(s) 231, 472, 879, 1077
SinI GGWCC 3 cut(s) 125, 161, 296
Sse9I AATT 6 cut(s) 558, 616, 643, 768, 837, 1227
SseBI AGGCCT 1 cut(s) 221
SsiI CCGC 3 cut(s) 411, 985, 1214
SspMI CTAG 2 cut(s) 54, 170
StuI AGGCCT 1 cut(s) 221
StyD4I CCNGG 1 cut(s) 291
StyI CCWWGG 3 cut(s) 53, 711, 871
TaaI ACNGT 2 cut(s) 1097, 1189
TaiI ACGT 1 cut(s) 273
TasI AATT 6 cut(s) 558, 616, 643, 768, 837, 1227
TatI WGTACW 3 cut(s) 505, 668, 1092
TfiI GAWTC 3 cut(s) 426, 659, 1174
Tru1I TTAA 4 cut(s) 335, 467, 482, 767
Tru9I TTAA 4 cut(s) 335, 467, 482, 767
TscAI CASTG 1 cut(s) 441
TseI GCWGC 6 cut(s) 155, 878, 881, 921, 1076, 1154
TspDTI ATGAA 3 cut(s) 190, 721, 1108
TspRI CASTG 1 cut(s) 441
Van91I CCANNNNNTGG 1 cut(s) 1010
VpaK11BI GGWCC 3 cut(s) 125, 161, 296
XapI RAATTY 2 cut(s) 616, 643
XmaJI CCTAGG 1 cut(s) 53
XmiI GTMKAC 1 cut(s) 598
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 2 cut(s) 54, 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.