RLG00000013178

polyamine transporter At1g31830 isoform X1

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
27108412 .. 27110866
2455 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013178

Sequence Viewer

Length: 1455 bp
ATGACACTATGGTACTTGCAGAAACATAGAACCTCACCTGCAAGAGAAAGTAGTGCGAAAATGTTGGACAACAATATTGGCGGGTATGTTGGTATGGGGGAAGGATCCTCTCACAACTTACACAAGTACAATAAGGTTTCAATTGTACCTCTTGTATTCTTGATCTTCTATGAGGTCTCTGGGGGGCCATTTGGCGTCGAAGACAGTGTCCAGGCAGCCGGTCCCTTGTTAGCCCTTCTCGGTTTTCTGGTTTTTGCAATCATATGGAGTGTTCCGGAGGCCTTGATAACTGCAGAAATGGGCACTATGTTCCCTGAAAATGGGGGATATGTTGTTTGGGTTTCATCGGCTTTGGGTCCATTTTGGGGATTTCAGCAAGGTTGGGTGAAATGGCTTAGTGGGGTGATTGATAATGCTCTGTACCCTGTTCTATTTCTGGACTATCTGAAGTCAGCAATTCCGGCTTTAGAAAGTGGTTTGCCAAGGACAATTGCAGTGTTGGTTTTGACTGCAATTCTCACTTATCTGAACTATAGGGGTTTAACCATAGTGGGCTGGGTAGCTATTTTACTAGGGGTGTTTTCACTTCTTCCTTTTATAGTCATGGGGCTGATAGCTATTCCCAAGATAGAGCCTTCGAGGTGGCTTATCGTAGATGTGGGCACTGTTAATTGGAGTTTGTACTTGAATACACTTTTCTGGAATCTTAATTACTGGGATTCAATCAGTACTCTTTCAGGAGAAGTGGAAAACCCTAGTAAAACTCTTCCAAAAGCTCTGTTTTATGCTCTAATCTTGGTTGTTGTTGGATACATTTTCCCTCTTCTGACTGGTACTGGAGCTATTCCAGTTGATCGTGAAGTGTGGTCCGATGGCTATTTTGCTGATATTGCTAAAATGCTGGGAGGCACATGGTTAAGAACCTGGGTTCTAGCGGCAGCTGCTTTGTCAAACATGGGAATGTTTGTGGCTGAAATGAGCAGCGACTCATTTCAACTTCTGGGTATGGCAGAAATTGGGATGCTTCCTGCATTCTTTGCCAAACGATCTCATTATGGTACCCCTCTTACGGGAATCTTGTTCTCTGCTTCCGGTGTAATTCTGCTATCGTGGTTGAGTTTCCAAGAGATTGTAGCGGCAGAGAACTACTTGTACTGTTTTGGGATGATTATGGAATTCATAGCATTCGTGAAGTTAAGAATTCAGCACCCAAACCTACCGCGGCCTTACAAGATACCATTTGGGACTATTGGAGCTATTTTGATGTGTATTCCTCCGACAGTGTTGATTTTTGTGGTTATAGCTCTTGCTTCTCTCAAGATCATGGCTATAAGCATTGCTGCTGTGATAGTCGGGTTTGTTTTGCAGCCTTGTGTTGAGCACATTAAAAAGAAGAGATGGTATGATTTCTGCAGGAATTCTGACCTTCCAGATTTCCAATATGCATCAGTGTAA

Protein Analysis

485

Amino Acids

53.45

Weight (kDa)

6.32

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 52 - 440 2.5e-41 Amino acid permease
AA_permease PF00324 69 - 446 1.1e-20 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 46
Acc36I ACCTGC 1 cut(s) 46
Acc65I GGTACC 1 cut(s) 1058
AccB1I GGYRCC 1 cut(s) 1058
AccII CGCG 1 cut(s) 1222
AccIII TCCGGA 1 cut(s) 274
AciI CCGC 5 cut(s) 81, 935, 1136, 1220, 1222
AclWI GGATC 2 cut(s) 99, 112
AcsI RAATTY 3 cut(s) 1175, 1200, 1417
AcuI CTGAAG 1 cut(s) 467
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 9 cut(s) 14, 128, 147, 422, 683, 730, 835, 1060, 1154
AfiI CCNNNNNNNGG 4 cut(s) 320, 365, 1069, 1070
AgsI TTSAA 4 cut(s) 141, 688, 723, 995
AjnI CCWGG 2 cut(s) 210, 923
AluBI AGCT 7 cut(s) 563, 617, 776, 842, 941, 1256, 1304
AluI AGCT 7 cut(s) 563, 617, 776, 842, 941, 1256, 1304
Alw21I GWGCWC 1 cut(s) 1383
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 2 cut(s) 99, 112
Aor13HI TCCGGA 1 cut(s) 274
AoxI GGCC 3 cut(s) 185, 279, 1223
ApeKI GCWGC 6 cut(s) 215, 938, 941, 981, 1340, 1366
ApoI RAATTY 3 cut(s) 1175, 1200, 1417
ArsI GACNNNNNNTTYG 2 cut(s) 192, 224
Asp718I GGTACC 1 cut(s) 1058
AspS9I GGNCC 4 cut(s) 185, 221, 356, 867
AsuHPI GGTGA 3 cut(s) 27, 397, 415
AvaII GGWCC 3 cut(s) 221, 356, 867
BaeGI GKGCMC 2 cut(s) 305, 665
BamHI GGATCC 1 cut(s) 104
BanI GGYRCC 1 cut(s) 1058
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 1383
BbvI GCAGC 6 cut(s) 227, 928, 950, 993, 1327, 1378
BccI CCATC 2 cut(s) 866, 1392
BciT130I CCWGG 2 cut(s) 212, 925
BciVI GTATCC 1 cut(s) 803
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 3 cut(s) 572, 756, 932
BfmI CTRYAG 3 cut(s) 291, 532, 1411
BfuAI ACCTGC 1 cut(s) 46
BfuI GTATCC 1 cut(s) 803
BisI GCNGC 9 cut(s) 216, 936, 939, 942, 982, 1137, 1223, 1341, 1367
BlsI GCNGC 9 cut(s) 217, 937, 940, 943, 983, 1138, 1224, 1342, 1368
BmcAI AGTACT 1 cut(s) 730
Bme1390I CCNGG 2 cut(s) 212, 925
Bme18I GGWCC 3 cut(s) 221, 356, 867
BmgT120I GGNCC 4 cut(s) 185, 221, 356, 867
BmiI GGNNCC 5 cut(s) 106, 186, 223, 357, 1060
BmrFI CCNGG 2 cut(s) 212, 925
BmrI ACTGGG 1 cut(s) 724
BmsI GCATC 1 cut(s) 1011
BmuI ACTGGG 1 cut(s) 724
BpiI GAAGAC 1 cut(s) 207
BpmI CTGGAG 1 cut(s) 858
BpuEI CTTGAG 1 cut(s) 1301
BsaHI GRCGYC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 3 cut(s) 482, 924, 1220
BsaWI WCCGGW 2 cut(s) 274, 1091
Bsc4I CCNNNNNNNGG 4 cut(s) 320, 365, 1069, 1070
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 4 cut(s) 719, 835, 841, 848
Bse3DI GCAATG 1 cut(s) 1335
BseAI TCCGGA 1 cut(s) 274
BseBI CCWGG 2 cut(s) 212, 925
BseDI CCNNGG 3 cut(s) 482, 924, 1220
BseGI GGATG 2 cut(s) 1026, 1170
BseLI CCNNNNNNNGG 4 cut(s) 320, 365, 1069, 1070
BseMI GCAATG 1 cut(s) 1335
BseNI ACTGG 4 cut(s) 719, 835, 841, 848
BseSI GKGCMC 2 cut(s) 305, 665
BseXI GCAGC 6 cut(s) 227, 928, 950, 993, 1327, 1378
BseYI CCCAGC 2 cut(s) 555, 901
Bsh1236I CGCG 1 cut(s) 1222
BshFI GGCC 3 cut(s) 187, 281, 1225
BshNI GGYRCC 1 cut(s) 1058
BsiHKAI GWGCWC 1 cut(s) 1383
BsiSI CCGG 4 cut(s) 219, 275, 461, 1092
BslFI GGGAC 2 cut(s) 207, 1258
BslI CCNNNNNNNGG 4 cut(s) 320, 365, 1069, 1070
BsmAI GTCTC 1 cut(s) 181
BsmFI GGGAC 2 cut(s) 207, 1258
BsmI GAATGC 2 cut(s) 1031, 1184
BsnI GGCC 3 cut(s) 187, 281, 1225
Bso31I GGTCTC 1 cut(s) 181
Bsp1286I GDGCHC 3 cut(s) 305, 665, 1383
Bsp13I TCCGGA 1 cut(s) 274
Bsp143I GATC 5 cut(s) 104, 162, 853, 1046, 1320
BspACI CCGC 5 cut(s) 81, 935, 1136, 1220, 1222
BspANI GGCC 3 cut(s) 187, 281, 1225
BspEI TCCGGA 1 cut(s) 274
BspFNI CGCG 1 cut(s) 1222
BspLI GGNNCC 5 cut(s) 106, 186, 223, 357, 1060
BspMAI CTGCAG 2 cut(s) 295, 1415
BspMI ACCTGC 1 cut(s) 46
BspPI GGATC 2 cut(s) 99, 112
BspT107I GGYRCC 1 cut(s) 1058
BspTNI GGTCTC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 1335
BsrFI RCCGGY 1 cut(s) 218
BsrI ACTGG 4 cut(s) 719, 835, 841, 848
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 3 cut(s) 482, 924, 1220
BssMI GATC 5 cut(s) 104, 162, 853, 1046, 1320
BssNI GRCGYC 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 482
Bst2UI CCWGG 2 cut(s) 212, 925
Bst4CI ACNGT 4 cut(s) 206, 667, 1157, 1282
Bst6I CTCTTC 3 cut(s) 771, 828, 1388
BstACI GRCGYC 1 cut(s) 195
BstAPI GCANNNNNTGC 1 cut(s) 1037
BstDEI CTNAG 1 cut(s) 395
BstDSI CCRYGG 1 cut(s) 1220
BstF5I GGATG 2 cut(s) 1026, 1170
BstFNI CGCG 1 cut(s) 1222
BstKTI GATC 5 cut(s) 107, 165, 856, 1049, 1323
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 5 cut(s) 104, 162, 853, 1046, 1320
BstMWI GCNNNNNNNGC 4 cut(s) 461, 890, 941, 1037
BstNI CCWGG 2 cut(s) 212, 925
BstSCI CCNGG 2 cut(s) 210, 923
BstSFI CTRYAG 3 cut(s) 291, 532, 1411
BstSLI GKGCMC 2 cut(s) 305, 665
BstUI CGCG 1 cut(s) 1222
BstV1I GCAGC 6 cut(s) 227, 928, 950, 993, 1327, 1378
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
BsuI GTATCC 1 cut(s) 803
BsuRI GGCC 3 cut(s) 187, 281, 1225
BtgI CCRYGG 1 cut(s) 1220
BtsCI GGATG 2 cut(s) 1026, 1170
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 5 cut(s) 211, 501, 663, 1287, 1455
BveI ACCTGC 1 cut(s) 46
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 4 cut(s) 185, 221, 356, 867
Cfr42I CCGCGG 1 cut(s) 1223
CseI GACGC 1 cut(s) 184
Csp6I GTAC 9 cut(s) 13, 127, 146, 421, 682, 729, 834, 1059, 1153
CviAII CATG 4 cut(s) 604, 912, 955, 1324
CviQI GTAC 9 cut(s) 13, 127, 146, 421, 682, 729, 834, 1059, 1153
DdeI CTNAG 1 cut(s) 395
DpnI GATC 5 cut(s) 106, 164, 855, 1048, 1322
DpnII GATC 5 cut(s) 104, 162, 853, 1046, 1320
Eam1104I CTCTTC 3 cut(s) 771, 828, 1388
EarI CTCTTC 3 cut(s) 771, 828, 1388
Eco130I CCWWGG 1 cut(s) 482
Eco147I AGGCCT 1 cut(s) 281
Eco31I GGTCTC 1 cut(s) 181
Eco47I GGWCC 3 cut(s) 221, 356, 867
Eco57I CTGAAG 1 cut(s) 467
EcoRI GAATTC 3 cut(s) 1175, 1200, 1417
EcoRII CCWGG 2 cut(s) 210, 923
EcoT14I CCWWGG 1 cut(s) 482
EcoT22I ATGCAT 1 cut(s) 1447
ErhI CCWWGG 1 cut(s) 482
FaeI CATG 4 cut(s) 607, 915, 958, 1327
FaqI GGGAC 2 cut(s) 207, 1258
FatI CATG 4 cut(s) 603, 911, 954, 1323
FauI CCCGC 1 cut(s) 74
FauNDI CATATG 1 cut(s) 263
Fnu4HI GCNGC 9 cut(s) 216, 936, 939, 942, 982, 1137, 1223, 1341, 1367
FokI GGATG 2 cut(s) 1033, 1177
Fsp4HI GCNGC 9 cut(s) 216, 936, 939, 942, 982, 1137, 1223, 1341, 1367
FspBI CTAG 3 cut(s) 572, 756, 932
GluI GCNGC 9 cut(s) 216, 936, 939, 942, 982, 1137, 1223, 1341, 1367
GsaI CCCAGC 2 cut(s) 559, 905
GsuI CTGGAG 1 cut(s) 858
HaeIII GGCC 3 cut(s) 187, 281, 1225
HapII CCGG 4 cut(s) 219, 275, 461, 1092
HgaI GACGC 1 cut(s) 184
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 4 cut(s) 607, 915, 958, 1327
HinfI GANTC 4 cut(s) 703, 719, 986, 1074
HpaII CCGG 4 cut(s) 219, 275, 461, 1092
HphI GGTGA 3 cut(s) 27, 397, 415
Hpy188I TCNGA 6 cut(s) 447, 528, 828, 871, 1278, 1423
Hpy188III TCNNGA 9 cut(s) 160, 275, 437, 700, 738, 857, 1189, 1318, 1430
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 4 cut(s) 95, 245, 645, 1436
HpyCH4III ACNGT 4 cut(s) 206, 667, 1157, 1282
HpyF10VI GCNNNNNNNGC 4 cut(s) 461, 890, 941, 1037
HpyF3I CTNAG 1 cut(s) 395
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 4 cut(s) 607, 915, 958, 1327
Kpn2I TCCGGA 1 cut(s) 274
KpnI GGTACC 1 cut(s) 1062
KspI CCGCGG 1 cut(s) 1223
Kzo9I GATC 5 cut(s) 104, 162, 853, 1046, 1320
LmnI GCTCC 2 cut(s) 839, 1253
Lsp1109I GCAGC 6 cut(s) 227, 928, 950, 993, 1327, 1378
LweI GCATC 1 cut(s) 1011
MaeI CTAG 3 cut(s) 572, 756, 932
MalI GATC 5 cut(s) 106, 164, 855, 1048, 1322
MboI GATC 5 cut(s) 104, 162, 853, 1046, 1320
MboII GAAGA 6 cut(s) 157, 212, 581, 758, 815, 1405
MfeI CAATTG 2 cut(s) 141, 489
MflI RGATCY 1 cut(s) 104
MhlI GDGCHC 3 cut(s) 305, 665, 1383
MlyI GAGTC 1 cut(s) 980
MmeI TCCRAC 3 cut(s) 45, 787, 1301
Mph1103I ATGCAT 1 cut(s) 1447
MroI TCCGGA 1 cut(s) 274
MseI TTAA 6 cut(s) 542, 669, 708, 917, 1196, 1386
MslI CAYNNNNRTG 1 cut(s) 959
MspA1I CMGCKG 2 cut(s) 941, 1222
MspI CCGG 4 cut(s) 219, 275, 461, 1092
MspR9I CCNGG 2 cut(s) 212, 925
MunI CAATTG 2 cut(s) 141, 489
Mva1269I GAATGC 2 cut(s) 1031, 1184
MvaI CCWGG 2 cut(s) 212, 925
MvnI CGCG 1 cut(s) 1222
MwoI GCNNNNNNNGC 4 cut(s) 461, 890, 941, 1037
NdeI CATATG 1 cut(s) 263
NdeII GATC 5 cut(s) 104, 162, 853, 1046, 1320
NlaIII CATG 4 cut(s) 607, 915, 958, 1327
NlaIV GGNNCC 5 cut(s) 106, 186, 223, 357, 1060
NsiI ATGCAT 1 cut(s) 1447
PaqCI CACCTGC 1 cut(s) 46
PceI AGGCCT 1 cut(s) 281
PctI GAATGC 2 cut(s) 1031, 1184
PfeI GAWTC 3 cut(s) 703, 719, 1074
PflFI GACNNNGTC 1 cut(s) 206
PkrI GCNGC 9 cut(s) 217, 937, 940, 943, 983, 1138, 1224, 1342, 1368
PleI GAGTC 1 cut(s) 980
PpsI GAGTC 1 cut(s) 980
Psp6I CCWGG 2 cut(s) 210, 923
PspFI CCCAGC 2 cut(s) 555, 901
PspGI CCWGG 2 cut(s) 210, 923
PspN4I GGNNCC 5 cut(s) 106, 186, 223, 357, 1060
PspPI GGNCC 4 cut(s) 185, 221, 356, 867
PsrI GAACNNNNNNTAC 2 cut(s) 1136, 1168
PstI CTGCAG 2 cut(s) 295, 1415
PsuI RGATCY 1 cut(s) 104
PsyI GACNNNGTC 1 cut(s) 206
PvuII CAGCTG 1 cut(s) 941
RsaI GTAC 9 cut(s) 14, 128, 147, 422, 683, 730, 835, 1060, 1154
RsaNI GTAC 9 cut(s) 13, 127, 146, 421, 682, 729, 834, 1059, 1153
RseI CAYNNNNRTG 1 cut(s) 959
SacII CCGCGG 1 cut(s) 1223
SaqAI TTAA 6 cut(s) 542, 669, 708, 917, 1196, 1386
SatI GCNGC 9 cut(s) 216, 936, 939, 942, 982, 1137, 1223, 1341, 1367
Sau3AI GATC 5 cut(s) 104, 162, 853, 1046, 1320
Sau96I GGNCC 4 cut(s) 185, 221, 356, 867
ScaI AGTACT 1 cut(s) 730
SchI GAGTC 1 cut(s) 980
ScrFI CCNGG 2 cut(s) 212, 925
SduI GDGCHC 3 cut(s) 305, 665, 1383
SfaNI GCATC 1 cut(s) 1011
SfcI CTRYAG 3 cut(s) 291, 532, 1411
Sfr303I CCGCGG 1 cut(s) 1223
SgrBI CCGCGG 1 cut(s) 1223
SinI GGWCC 3 cut(s) 221, 356, 867
SmiMI CAYNNNNRTG 1 cut(s) 959
SmlI CTYRAG 1 cut(s) 1316
SmoI CTYRAG 1 cut(s) 1316
SseBI AGGCCT 1 cut(s) 281
SsiI CCGC 5 cut(s) 81, 935, 1136, 1220, 1222
SspI AATATT 1 cut(s) 76
SspMI CTAG 3 cut(s) 572, 756, 932
StuI AGGCCT 1 cut(s) 281
StyD4I CCNGG 2 cut(s) 210, 923
StyI CCWWGG 1 cut(s) 482
TaaI ACNGT 4 cut(s) 206, 667, 1157, 1282
TaqI TCGA 2 cut(s) 198, 638
TatI WGTACW 4 cut(s) 126, 681, 728, 1152
TauI GCSGC 3 cut(s) 938, 1139, 1225
TfiI GAWTC 3 cut(s) 703, 719, 1074
Tru1I TTAA 6 cut(s) 542, 669, 708, 917, 1196, 1386
Tru9I TTAA 6 cut(s) 542, 669, 708, 917, 1196, 1386
TscAI CASTG 5 cut(s) 211, 501, 670, 1287, 1455
TseI GCWGC 6 cut(s) 215, 938, 941, 981, 1340, 1366
TspDTI ATGAA 2 cut(s) 333, 1168
TspRI CASTG 5 cut(s) 211, 501, 670, 1287, 1455
Tth111I GACNNNGTC 1 cut(s) 206
VpaK11BI GGWCC 3 cut(s) 221, 356, 867
XapI RAATTY 3 cut(s) 1175, 1200, 1417
XspI CTAG 3 cut(s) 572, 756, 932
ZrmI AGTACT 1 cut(s) 730
Zsp2I ATGCAT 1 cut(s) 1447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.