MD17G1241900.v1.1

polyamine transporter At1g31830 isoform X1

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
29128963 .. 29131470
2508 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1241900.v1.1.491

Sequence Viewer

Length: 1443 bp
ATGAAACATAGAAACTCACCTATTAGGCAAATGTTGGACAACAATATTGCTGAGTATGCTCGTTTGGGGGAAGGATCCTCTCACGACTTACATAAGTATCAAAAGGTTTCAATTATACCTCTTGTGTTCTTGATCTTCTACGAGGTCTCAGGAGGTCCATTTGGTGTCGAAGATAGTGTCCAGGCAGCCGGTCCCCTTTTAGCCCTTCTTGGTTTTCTAGTTTTTGCAATCATATGGAGTGTTCCAGAGGCCTTGATAACTGCAGAAATGGGTACTATGTTCCCTGAGAATGGGGGATATGTCGTTTGGGTCTCATCGGCTTTGGGACCGTACTGGGGCTTTCAGCAAGGATGGGTAAAATGGCTTAGTGGGGTGATTGATAACGCTCTATACCCTGTTCTGTTTCTTGACTATCTCAAATCAGCAATTCCGGCTTTAGAAAGCGGTCTCCCAAGGACAGTTGCCGTGTTGGTTTTGACAGCAATGCTCACTTACATGAACTACAGGGGTTTGACAATAGTGGGTTGGGCTGCTATCTTACTGGGGGTGTTTTCACTTCTTCCTTTCATATTCATGGGATTTATAGCAATCCCCAAACTAAATCCTTCAAATTGGTTTGTGGTAAACCTGGAGACTGTGAATTGGACTTTGTACTTGAACACGCTGTTTTGGAATCTTAATTACTGGGATTCAATTAGTACTCTTGCAGGGGAGGTGGAAAACCCTGGTACAACTCTTCCGAAATCTCTCTTTTATGCCCTTATCTTGGTTGTGGTTGGATACATTTTCCCTCTTCTGATTGGTACCGGAGCTGTTCCAGTTGAACGTGATCTATGGTCAGATGGGTATTTTGCAGATATTGCTAAAATGCTTGGAGGTGTATGGTTAAGAACCTGGGTCCTAGCAGCTTCTGCTTTGTCAAACATGGGTATGTTTGTGGCTGAAATGAGCAGCGACTCGTTTCAACTTTTGGGTATGGCAGAACGTGGGATGCTTCCTTCAATCTTTGCCAAAAGATCTCGTTACGGCACACCGCTTACCGGAATCTTATTCTCTGCGTCCGGTGTAATCTTGCTTTCCTGGTTGAGCTTCCAAGAGATTGTAGCTGCTGAGAACTACTTGTATTGCTTCGGAATGATAATGGAATTCATTGCGTTTGTGAAATTGAGGATGAAACACCCAGCTGCATCGCGGCCTTTTAAGATACCGGTGGGTACAGTGGGAGCAATTTTGATCTGCATTCCTCCGACGGTGTTAATCTTTGTAGTTTTAGCTCTTGCTACTCCAAAGGTAATGGCTGTTAGCATCGCTGCGGTGATCATCGGGCTGCTTCTGCATCCTTGCATCGAGCACACGAAACAAAAGAGGTGGTTTAATTTCTCCACGAATTCTAACCTTCCAGACATCCACAATGCATATGATCAGTATAGTATTGTGGCATGA

Protein Analysis

481

Amino Acids

53.05

Weight (kDa)

6.39

Isoelectric Point (pI)

32.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 42 - 440 6.7e-38 Amino acid permease
AA_permease PF00324 59 - 445 2e-22 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 803
AccB1I GGYRCC 1 cut(s) 803
AccII CGCG 1 cut(s) 1192
AciI CCGC 4 cut(s) 444, 1034, 1192, 1313
AclWI GGATC 2 cut(s) 69, 82
AcsI RAATTY 2 cut(s) 1145, 1387
AfaI GTAC 7 cut(s) 274, 332, 653, 700, 730, 805, 1216
AfiI CCNNNNNNNGG 4 cut(s) 290, 335, 766, 1040
AgeI ACCGGT 1 cut(s) 1207
AgsI TTSAA 7 cut(s) 111, 609, 658, 693, 824, 965, 1002
AjnI CCWGG 5 cut(s) 180, 627, 724, 893, 1079
AluBI AGCT 6 cut(s) 812, 908, 1089, 1106, 1184, 1274
AluI AGCT 6 cut(s) 812, 908, 1089, 1106, 1184, 1274
Alw21I GWGCWC 1 cut(s) 1353
Alw26I GTCTC 4 cut(s) 151, 316, 452, 626
AlwI GGATC 2 cut(s) 69, 82
AlwNI CAGNNNCTG 1 cut(s) 911
AoxI GGCC 2 cut(s) 249, 1193
ApeKI GCWGC 8 cut(s) 185, 530, 905, 951, 1106, 1184, 1310, 1327
ApoI RAATTY 2 cut(s) 1145, 1387
ArsI GACNNNNNNTTYG 2 cut(s) 162, 194
AsiGI ACCGGT 1 cut(s) 1207
Asp718I GGTACC 1 cut(s) 803
AspS9I GGNCC 4 cut(s) 155, 191, 326, 898
AsuHPI GGTGA 3 cut(s) 9, 385, 1327
AvaII GGWCC 4 cut(s) 155, 191, 326, 898
BaeI ACNNNNGTAYC 2 cut(s) 80, 113
BamHI GGATCC 1 cut(s) 74
BanI GGYRCC 1 cut(s) 803
Bbv12I GWGCWC 1 cut(s) 1353
BbvI GCAGC 8 cut(s) 197, 517, 917, 963, 1093, 1171, 1297, 1314
BccI CCATC 2 cut(s) 345, 836
BceAI ACGGC 2 cut(s) 449, 1042
BciT130I CCWGG 5 cut(s) 182, 629, 726, 895, 1081
BciVI GTATCC 1 cut(s) 773
BclI TGATCA 2 cut(s) 1317, 1420
BcoDI GTCTC 4 cut(s) 151, 316, 452, 626
BfaI CTAG 2 cut(s) 218, 902
BfmI CTRYAG 2 cut(s) 261, 502
BfuI GTATCC 1 cut(s) 773
BglII AGATCT 1 cut(s) 1016
BisI GCNGC 9 cut(s) 186, 531, 906, 952, 1107, 1185, 1193, 1311, 1328
BlsI GCNGC 9 cut(s) 187, 532, 907, 953, 1108, 1186, 1194, 1312, 1329
BmcAI AGTACT 1 cut(s) 700
Bme1390I CCNGG 5 cut(s) 182, 629, 726, 895, 1081
Bme18I GGWCC 4 cut(s) 155, 191, 326, 898
BmgT120I GGNCC 4 cut(s) 155, 191, 326, 898
BmiI GGNNCC 5 cut(s) 76, 193, 327, 805, 899
BmrFI CCNGG 5 cut(s) 182, 629, 726, 895, 1081
BmrI ACTGGG 3 cut(s) 343, 551, 694
BmsI GCATC 5 cut(s) 981, 1196, 1314, 1345, 1353
BmuI ACTGGG 3 cut(s) 343, 551, 694
BpmI CTGGAG 1 cut(s) 650
BsaI GGTCTC 3 cut(s) 151, 316, 452
BsaJI CCNNGG 3 cut(s) 452, 724, 894
BsaWI WCCGGW 4 cut(s) 806, 1040, 1061, 1207
Bsc4I CCNNNNNNNGG 4 cut(s) 290, 335, 766, 1040
Bse118I RCCGGY 2 cut(s) 188, 1207
Bse1I ACTGG 4 cut(s) 338, 546, 689, 818
Bse3DI GCAATG 2 cut(s) 489, 1149
BseBI CCWGG 5 cut(s) 182, 629, 726, 895, 1081
BseDI CCNNGG 3 cut(s) 452, 724, 894
BseGI GGATG 5 cut(s) 356, 996, 1176, 1336, 1404
BseLI CCNNNNNNNGG 4 cut(s) 290, 335, 766, 1040
BseMI GCAATG 2 cut(s) 489, 1149
BseMII CTCAG 4 cut(s) 42, 162, 276, 1101
BseNI ACTGG 4 cut(s) 338, 546, 689, 818
BseXI GCAGC 8 cut(s) 197, 517, 917, 963, 1093, 1171, 1297, 1314
BseYI CCCAGC 1 cut(s) 1180
Bsh1236I CGCG 1 cut(s) 1192
BshFI GGCC 2 cut(s) 251, 1195
BshNI GGYRCC 1 cut(s) 803
BshTI ACCGGT 1 cut(s) 1207
BsiHKAI GWGCWC 1 cut(s) 1353
BsiSI CCGG 6 cut(s) 189, 431, 807, 1041, 1062, 1208
BslFI GGGAC 2 cut(s) 177, 339
BslI CCNNNNNNNGG 4 cut(s) 290, 335, 766, 1040
BsmAI GTCTC 4 cut(s) 151, 316, 452, 626
BsmFI GGGAC 2 cut(s) 177, 339
BsmI GAATGC 1 cut(s) 1239
BsnI GGCC 2 cut(s) 251, 1195
Bso31I GGTCTC 3 cut(s) 151, 316, 452
Bsp1286I GDGCHC 1 cut(s) 1353
Bsp143I GATC 7 cut(s) 74, 132, 829, 1016, 1233, 1317, 1420
BspACI CCGC 4 cut(s) 444, 1034, 1192, 1313
BspANI GGCC 2 cut(s) 251, 1195
BspCNI CTCAG 4 cut(s) 43, 161, 277, 1102
BspFNI CGCG 1 cut(s) 1192
BspLI GGNNCC 5 cut(s) 76, 193, 327, 805, 899
BspMAI CTGCAG 1 cut(s) 265
BspPI GGATC 2 cut(s) 69, 82
BspT107I GGYRCC 1 cut(s) 803
BspTNI GGTCTC 3 cut(s) 151, 316, 452
BsrDI GCAATG 2 cut(s) 489, 1149
BsrFI RCCGGY 2 cut(s) 188, 1207
BsrI ACTGG 4 cut(s) 338, 546, 689, 818
BssAI RCCGGY 2 cut(s) 188, 1207
BssECI CCNNGG 3 cut(s) 452, 724, 894
BssMI GATC 7 cut(s) 74, 132, 829, 1016, 1233, 1317, 1420
BssT1I CCWWGG 1 cut(s) 452
Bst2UI CCWGG 5 cut(s) 182, 629, 726, 895, 1081
Bst4CI ACNGT 5 cut(s) 330, 460, 637, 1219, 1252
Bst6I CTCTTC 2 cut(s) 741, 798
BstAPI GCANNNNNTGC 2 cut(s) 860, 911
BstDEI CTNAG 5 cut(s) 51, 148, 285, 365, 1110
BstF5I GGATG 5 cut(s) 356, 996, 1176, 1336, 1404
BstFNI CGCG 1 cut(s) 1192
BstKTI GATC 7 cut(s) 77, 135, 832, 1019, 1236, 1320, 1423
BstMAI GTCTC 4 cut(s) 151, 316, 452, 626
BstMBI GATC 7 cut(s) 74, 132, 829, 1016, 1233, 1317, 1420
BstMWI GCNNNNNNNGC 5 cut(s) 56, 431, 860, 911, 1333
BstNI CCWGG 5 cut(s) 182, 629, 726, 895, 1081
BstSCI CCNGG 5 cut(s) 180, 627, 724, 893, 1079
BstSFI CTRYAG 2 cut(s) 261, 502
BstUI CGCG 1 cut(s) 1192
BstV1I GCAGC 8 cut(s) 197, 517, 917, 963, 1093, 1171, 1297, 1314
BstX2I RGATCY 2 cut(s) 74, 1016
BstYI RGATCY 2 cut(s) 74, 1016
BsuI GTATCC 1 cut(s) 773
BsuRI GGCC 2 cut(s) 251, 1195
BtgZI GCGATG 2 cut(s) 1173, 1291
BtsCI GGATG 5 cut(s) 356, 996, 1176, 1336, 1404
BtsIMutI CAGTG 1 cut(s) 1224
CaiI CAGNNNCTG 1 cut(s) 911
Cfr10I RCCGGY 2 cut(s) 188, 1207
Cfr13I GGNCC 4 cut(s) 155, 191, 326, 898
CseI GACGC 1 cut(s) 1047
Csp6I GTAC 7 cut(s) 273, 331, 652, 699, 729, 804, 1215
CspAI ACCGGT 1 cut(s) 1207
CspCI CAANNNNNGTGG 2 cut(s) 1349, 1384
CviAII CATG 4 cut(s) 496, 574, 925, 1440
CviQI GTAC 7 cut(s) 273, 331, 652, 699, 729, 804, 1215
DdeI CTNAG 5 cut(s) 51, 148, 285, 365, 1110
DpnI GATC 7 cut(s) 76, 134, 831, 1018, 1235, 1319, 1422
DpnII GATC 7 cut(s) 74, 132, 829, 1016, 1233, 1317, 1420
Eam1104I CTCTTC 2 cut(s) 741, 798
EarI CTCTTC 2 cut(s) 741, 798
Eco130I CCWWGG 1 cut(s) 452
Eco147I AGGCCT 1 cut(s) 251
Eco31I GGTCTC 3 cut(s) 151, 316, 452
Eco47I GGWCC 4 cut(s) 155, 191, 326, 898
EcoO109I RGGNCCY 1 cut(s) 898
EcoRI GAATTC 2 cut(s) 1145, 1387
EcoRII CCWGG 5 cut(s) 180, 627, 724, 893, 1079
EcoT14I CCWWGG 1 cut(s) 452
EcoT22I ATGCAT 1 cut(s) 1417
ErhI CCWWGG 1 cut(s) 452
FaeI CATG 4 cut(s) 499, 577, 928, 1443
FaqI GGGAC 2 cut(s) 177, 339
FatI CATG 4 cut(s) 495, 573, 924, 1439
FauNDI CATATG 2 cut(s) 233, 1417
FbaI TGATCA 2 cut(s) 1317, 1420
Fnu4HI GCNGC 9 cut(s) 186, 531, 906, 952, 1107, 1185, 1193, 1311, 1328
FokI GGATG 5 cut(s) 363, 1003, 1183, 1323, 1391
Fsp4HI GCNGC 9 cut(s) 186, 531, 906, 952, 1107, 1185, 1193, 1311, 1328
FspBI CTAG 2 cut(s) 218, 902
GluI GCNGC 9 cut(s) 186, 531, 906, 952, 1107, 1185, 1193, 1311, 1328
GsaI CCCAGC 1 cut(s) 1184
GsuI CTGGAG 1 cut(s) 650
HaeIII GGCC 2 cut(s) 251, 1195
HapII CCGG 6 cut(s) 189, 431, 807, 1041, 1062, 1208
HgaI GACGC 1 cut(s) 1047
Hin1II CATG 4 cut(s) 499, 577, 928, 1443
HinfI GANTC 4 cut(s) 673, 689, 956, 1044
HpaII CCGG 6 cut(s) 189, 431, 807, 1041, 1062, 1208
HphI GGTGA 3 cut(s) 9, 385, 1327
Hpy166II GTNNAC 1 cut(s) 625
Hpy188I TCNGA 5 cut(s) 741, 798, 841, 1133, 1248
Hpy188III TCNNGA 6 cut(s) 83, 130, 150, 245, 407, 1400
Hpy8I GTNNAC 1 cut(s) 625
Hpy99I CGWCG 1 cut(s) 1252
HpyAV CCTTC 5 cut(s) 65, 215, 615, 1008, 1406
HpyCH4III ACNGT 5 cut(s) 330, 460, 637, 1219, 1252
HpyCH4IV ACGT 2 cut(s) 826, 985
HpyCH4V TGCA 9 cut(s) 227, 263, 707, 854, 1187, 1239, 1336, 1344, 1415
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 431, 860, 911, 1333
HpyF3I CTNAG 5 cut(s) 51, 148, 285, 365, 1110
HpySE526I ACGT 2 cut(s) 826, 985
Hsp92II CATG 4 cut(s) 499, 577, 928, 1443
KpnI GGTACC 1 cut(s) 807
Ksp22I TGATCA 2 cut(s) 1317, 1420
Kzo9I GATC 7 cut(s) 74, 132, 829, 1016, 1233, 1317, 1420
LmnI GCTCC 2 cut(s) 809, 1223
Lsp1109I GCAGC 8 cut(s) 197, 517, 917, 963, 1093, 1171, 1297, 1314
LweI GCATC 5 cut(s) 981, 1196, 1314, 1345, 1353
MaeI CTAG 2 cut(s) 218, 902
MaeII ACGT 2 cut(s) 826, 985
MaeIII GTNAC 1 cut(s) 1022
MalI GATC 7 cut(s) 76, 134, 831, 1018, 1235, 1319, 1422
MboI GATC 7 cut(s) 74, 132, 829, 1016, 1233, 1317, 1420
MboII GAAGA 5 cut(s) 127, 182, 551, 728, 785
MflI RGATCY 2 cut(s) 74, 1016
MhlI GDGCHC 1 cut(s) 1353
MlyI GAGTC 1 cut(s) 950
MmeI TCCRAC 3 cut(s) 15, 757, 1271
Mph1103I ATGCAT 1 cut(s) 1417
MseI TTAA 5 cut(s) 678, 887, 1200, 1256, 1374
MslI CAYNNNNRTG 3 cut(s) 494, 572, 929
MspA1I CMGCKG 1 cut(s) 1184
MspI CCGG 6 cut(s) 189, 431, 807, 1041, 1062, 1208
MspR9I CCNGG 5 cut(s) 182, 629, 726, 895, 1081
Mva1269I GAATGC 1 cut(s) 1239
MvaI CCWGG 5 cut(s) 182, 629, 726, 895, 1081
MvnI CGCG 1 cut(s) 1192
MwoI GCNNNNNNNGC 5 cut(s) 56, 431, 860, 911, 1333
NdeI CATATG 2 cut(s) 233, 1417
NdeII GATC 7 cut(s) 74, 132, 829, 1016, 1233, 1317, 1420
NlaIII CATG 4 cut(s) 499, 577, 928, 1443
NlaIV GGNNCC 5 cut(s) 76, 193, 327, 805, 899
NsiI ATGCAT 1 cut(s) 1417
PceI AGGCCT 1 cut(s) 251
PctI GAATGC 1 cut(s) 1239
PfeI GAWTC 3 cut(s) 673, 689, 1044
PinAI ACCGGT 1 cut(s) 1207
PkrI GCNGC 9 cut(s) 187, 532, 907, 953, 1108, 1186, 1194, 1312, 1329
PleI GAGTC 1 cut(s) 950
PpsI GAGTC 1 cut(s) 950
PpuMI RGGWCCY 1 cut(s) 898
Psp5II RGGWCCY 1 cut(s) 898
Psp6I CCWGG 5 cut(s) 180, 627, 724, 893, 1079
PspFI CCCAGC 1 cut(s) 1180
PspGI CCWGG 5 cut(s) 180, 627, 724, 893, 1079
PspN4I GGNNCC 5 cut(s) 76, 193, 327, 805, 899
PspPI GGNCC 4 cut(s) 155, 191, 326, 898
PspPPI RGGWCCY 1 cut(s) 898
PstI CTGCAG 1 cut(s) 265
PstNI CAGNNNCTG 1 cut(s) 911
PsuI RGATCY 2 cut(s) 74, 1016
PvuII CAGCTG 1 cut(s) 1184
RsaI GTAC 7 cut(s) 274, 332, 653, 700, 730, 805, 1216
RsaNI GTAC 7 cut(s) 273, 331, 652, 699, 729, 804, 1215
RseI CAYNNNNRTG 3 cut(s) 494, 572, 929
SaqAI TTAA 5 cut(s) 678, 887, 1200, 1256, 1374
SatI GCNGC 9 cut(s) 186, 531, 906, 952, 1107, 1185, 1193, 1311, 1328
Sau3AI GATC 7 cut(s) 74, 132, 829, 1016, 1233, 1317, 1420
Sau96I GGNCC 4 cut(s) 155, 191, 326, 898
ScaI AGTACT 1 cut(s) 700
SchI GAGTC 1 cut(s) 950
ScrFI CCNGG 5 cut(s) 182, 629, 726, 895, 1081
SduI GDGCHC 1 cut(s) 1353
SfaNI GCATC 5 cut(s) 981, 1196, 1314, 1345, 1353
SfcI CTRYAG 2 cut(s) 261, 502
SinI GGWCC 4 cut(s) 155, 191, 326, 898
SmiMI CAYNNNNRTG 3 cut(s) 494, 572, 929
SseBI AGGCCT 1 cut(s) 251
SsiI CCGC 4 cut(s) 444, 1034, 1192, 1313
SspI AATATT 1 cut(s) 46
SspMI CTAG 2 cut(s) 218, 902
StuI AGGCCT 1 cut(s) 251
StyD4I CCNGG 5 cut(s) 180, 627, 724, 893, 1079
StyI CCWWGG 1 cut(s) 452
TaaI ACNGT 5 cut(s) 330, 460, 637, 1219, 1252
TaiI ACGT 2 cut(s) 829, 988
TaqI TCGA 2 cut(s) 168, 1347
TatI WGTACW 2 cut(s) 651, 698
TauI GCSGC 1 cut(s) 1195
TfiI GAWTC 3 cut(s) 673, 689, 1044
Tru1I TTAA 5 cut(s) 678, 887, 1200, 1256, 1374
Tru9I TTAA 5 cut(s) 678, 887, 1200, 1256, 1374
TscAI CASTG 1 cut(s) 1224
TseI GCWGC 8 cut(s) 185, 530, 905, 951, 1106, 1184, 1310, 1327
TspDTI ATGAA 6 cut(s) 17, 512, 556, 562, 1138, 1187
TspRI CASTG 1 cut(s) 1224
VpaK11BI GGWCC 4 cut(s) 155, 191, 326, 898
XapI RAATTY 2 cut(s) 1145, 1387
XspI CTAG 2 cut(s) 218, 902
ZrmI AGTACT 1 cut(s) 700
Zsp2I ATGCAT 1 cut(s) 1417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.