FvH4_4g35270

polyamine transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
32621272 .. 32624074
2803 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g35270.t1

Sequence Viewer

Length: 1383 bp
ATGGAAGGCTTTATTGAAATGGGAGAGTACAACGATCCCCAATATGTTAGAGTTGGTGAAGCAAGTTCCCCTAGGGTAAATGACTTCAAGAAAGTCTCAGTCCTCCCCCTTGTCTTCCTCATCTTCTATGAGGTATCTGGCGGTCCAATTGGTGTTGAGGACATTGTCAGGGCTGCCGGTCCCCTTCTAGCACTAATCGGATTCTTGGTGTTTCCATTCATTTGGAGTGTTCCTGAGGCCTTGATTACTGCAGAGAATGGGTACCATGTTCCCTGTGAATGGGGTTATGTGGTTTGGGTTTCTTCAGCCCTGGGTCCATATTGGGGGTTCCAAGTAGGATGGGTGAAATGGTTAAGTGGAGTCATTGATAATGCTTTGTACCCTGTTCTGTTTTTGGACTACTTGAAGTCAGCCATACCAGCTTTAGGCTATGGAGTTCCAAGAATCGAAGCAGTGGTAGCTTTGACATTGCTTCTCACTTACTTAAACTATAGGGGTTTAACCATTGTCGGATGGGTTGCTATATTTTTAGGGATTTTCTCGTTCATTCCTTTTGTGGTTATGGGACTTGTGGCAATTCCTAAGTTGAAGCCTTCAAGATGGTTAGTGGTGAGTCTACACAATGTGAACTGGAATTTGTATTTGAACACTCTCTTTTGGAATTTGAACTATTGGGATTCGATAAGTACAATTGCTGGAGAGGTAGAGAACCCAAAGAAGACTCTCCCCAGGGCTCTCTTTTATGCTTTTTATTTGGTTGTTGTTGCATATTTCTTCCCCCTTTTAATTGGTACTGGCGCTGTTCAACTTGATCCTGAGTTGTGGACTGATGGCTACTTCTCTGATATTGCAAAAATTGTTGGGGGAGTTTGGTTGAGATGGTGGATCCAAGGGGCTGCAGCCATGTCAAATATGGGGATGTTTGTGGCTGAAATGAGTAGCGACTCTTTCCAACTTCTAGGGATGGCAGAAAGAGGGATGCTGCCTGAGTGTTTTGGTAAGCGGTCTCGTTATGGAACCCCAGTCATTGGCATTTTGTTCTCAGCTTCTGGAGTCCTTTTGTTATCTTGGCTAAGCTTTCTAGAGATTGTAGCTGCAGAAAACTTCTTGTACTGTGTTGGAATGATTTTGGAGTTCATAGCATTTATACGATTACGAATGAAATACCCAGCTGCGTCTCGGCCTTACAAGATTCCTATTGGAACAGTTGGAGCTGTTCTTTTGTGCACCCCACCAACCCTACTAATTGGAGTAGTGTTGGCTCTTTCTAAGCGCAAGGTTGTTGTTGTGAGCCTTATTGCTTTAGTGATTGGCCTTGTGATGCAGCCCTGTCTCAAATATGTTGAGAGAAAGAGGTGGATGAAGTTCTCCATCAAGCTCTGA

Protein Analysis

461

Amino Acids

51.36

Weight (kDa)

8.76

Isoelectric Point (pI)

32.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 34 - 411 1.4e-32 Amino acid permease
AA_permease PF00324 55 - 419 1.4e-12 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 261
AccB7I CCANNNNNTGG 1 cut(s) 1028
AccI GTMKAC 1 cut(s) 616
AciI CCGC 2 cut(s) 141, 1003
AclWI GGATC 4 cut(s) 29, 806, 880, 893
AcsI RAATTY 2 cut(s) 634, 661
AcuI CTGAAG 1 cut(s) 288
AdeI CACNNNGTG 1 cut(s) 625
AfaI GTAC 6 cut(s) 29, 263, 380, 688, 793, 1112
AfiI CCNNNNNNNGG 4 cut(s) 279, 323, 425, 1028
AgsI TTSAA 8 cut(s) 17, 88, 406, 589, 597, 646, 667, 806
AjnI CCWGG 2 cut(s) 309, 728
AluBI AGCT 8 cut(s) 422, 461, 1046, 1077, 1094, 1172, 1214, 1378
AluI AGCT 8 cut(s) 422, 461, 1046, 1077, 1094, 1172, 1214, 1378
Alw21I GWGCWC 1 cut(s) 1229
Alw26I GTCTC 4 cut(s) 100, 1011, 1182, 1337
Alw44I GTGCAC 1 cut(s) 1225
AlwI GGATC 4 cut(s) 29, 806, 880, 893
AlwNI CAGNNNCTG 1 cut(s) 1049
AoxI GGCC 3 cut(s) 237, 1181, 1312
ApaLI GTGCAC 1 cut(s) 1225
ApeKI GCWGC 7 cut(s) 173, 896, 899, 982, 1094, 1172, 1324
ApoI RAATTY 2 cut(s) 634, 661
Asp718I GGTACC 1 cut(s) 261
AspA2I CCTAGG 1 cut(s) 71
AspLEI GCGC 2 cut(s) 800, 1275
AspS9I GGNCC 3 cut(s) 143, 179, 314
AsuHPI GGTGA 3 cut(s) 68, 355, 622
AvaII GGWCC 3 cut(s) 143, 179, 314
AvrII CCTAGG 1 cut(s) 71
AxyI CCTNAGG 1 cut(s) 234
BaeGI GKGCMC 1 cut(s) 1229
BamHI GGATCC 1 cut(s) 885
BanI GGYRCC 1 cut(s) 261
BanII GRGCYC 1 cut(s) 736
BbsI GAAGAC 2 cut(s) 106, 725
Bbv12I GWGCWC 1 cut(s) 1229
BbvI GCAGC 7 cut(s) 160, 883, 911, 969, 1081, 1159, 1336
BccI CCATC 7 cut(s) 333, 507, 594, 824, 873, 958, 1379
BciT130I CCWGG 2 cut(s) 311, 730
BcoDI GTCTC 4 cut(s) 100, 1011, 1182, 1337
BfaI CTAG 4 cut(s) 72, 188, 959, 1082
BfmI CTRYAG 4 cut(s) 249, 490, 897, 1095
BfoI RGCGCY 1 cut(s) 801
BisI GCNGC 7 cut(s) 174, 897, 900, 983, 1095, 1173, 1325
BlnI CCTAGG 1 cut(s) 71
BlpI GCTNAGC 1 cut(s) 1073
BlsI GCNGC 7 cut(s) 175, 898, 901, 984, 1096, 1174, 1326
Bme1390I CCNGG 2 cut(s) 311, 730
Bme18I GGWCC 3 cut(s) 143, 179, 314
BmgT120I GGNCC 3 cut(s) 143, 179, 314
BmiI GGNNCC 6 cut(s) 181, 263, 315, 329, 887, 1018
BmrFI CCNGG 2 cut(s) 311, 730
BmrI ACTGGG 1 cut(s) 1016
BmsI GCATC 2 cut(s) 969, 1311
BmuI ACTGGG 1 cut(s) 1016
BpiI GAAGAC 2 cut(s) 106, 725
BpmI CTGGAG 2 cut(s) 717, 1071
Bpu1102I GCTNAGC 1 cut(s) 1073
BsaI GGTCTC 1 cut(s) 1011
BsaJI CCNNGG 6 cut(s) 71, 309, 310, 728, 729, 889
Bsc4I CCNNNNNNNGG 4 cut(s) 279, 323, 425, 1028
Bse118I RCCGGY 1 cut(s) 176
Bse1I ACTGG 3 cut(s) 635, 799, 1022
Bse21I CCTNAGG 1 cut(s) 234
Bse3DI GCAATG 1 cut(s) 467
BseBI CCWGG 2 cut(s) 311, 730
BseDI CCNNGG 6 cut(s) 71, 309, 310, 728, 729, 889
BseGI GGATG 6 cut(s) 344, 518, 924, 969, 984, 1365
BseLI CCNNNNNNNGG 4 cut(s) 279, 323, 425, 1028
BseMI GCAATG 1 cut(s) 467
BseMII CTCAG 5 cut(s) 111, 225, 807, 978, 1056
BseNI ACTGG 3 cut(s) 635, 799, 1022
BseSI GKGCMC 1 cut(s) 1229
BseXI GCAGC 7 cut(s) 160, 883, 911, 969, 1081, 1159, 1336
BseYI CCCAGC 1 cut(s) 1168
BshFI GGCC 3 cut(s) 239, 1183, 1314
BshNI GGYRCC 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 1229
BsiSI CCGG 1 cut(s) 177
BslFI GGGAC 2 cut(s) 165, 579
BslI CCNNNNNNNGG 4 cut(s) 279, 323, 425, 1028
BsmAI GTCTC 4 cut(s) 100, 1011, 1182, 1337
BsmBI CGTCTC 1 cut(s) 1182
BsmFI GGGAC 2 cut(s) 165, 579
BsnI GGCC 3 cut(s) 239, 1183, 1314
Bso31I GGTCTC 1 cut(s) 1011
Bsp1286I GDGCHC 2 cut(s) 736, 1229
Bsp143I GATC 3 cut(s) 34, 811, 885
Bsp1720I GCTNAGC 1 cut(s) 1073
BspACI CCGC 2 cut(s) 141, 1003
BspANI GGCC 3 cut(s) 239, 1183, 1314
BspCNI CTCAG 5 cut(s) 110, 226, 808, 979, 1055
BspLI GGNNCC 6 cut(s) 181, 263, 315, 329, 887, 1018
BspMAI CTGCAG 3 cut(s) 253, 901, 1099
BspPI GGATC 4 cut(s) 29, 806, 880, 893
BspT107I GGYRCC 1 cut(s) 261
BspTNI GGTCTC 1 cut(s) 1011
BsrDI GCAATG 1 cut(s) 467
BsrFI RCCGGY 1 cut(s) 176
BsrI ACTGG 3 cut(s) 635, 799, 1022
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 6 cut(s) 71, 309, 310, 728, 729, 889
BssMI GATC 3 cut(s) 34, 811, 885
BssT1I CCWWGG 2 cut(s) 71, 889
Bst2UI CCWGG 2 cut(s) 311, 730
Bst4CI ACNGT 2 cut(s) 1115, 1207
BstDEI CTNAG 8 cut(s) 97, 234, 582, 816, 987, 1042, 1073, 1269
BstF5I GGATG 6 cut(s) 344, 518, 924, 969, 984, 1365
BstH2I RGCGCY 1 cut(s) 801
BstHHI GCGC 2 cut(s) 800, 1275
BstKTI GATC 3 cut(s) 37, 814, 888
BstMAI GTCTC 4 cut(s) 100, 1011, 1182, 1337
BstMBI GATC 3 cut(s) 34, 811, 885
BstMWI GCNNNNNNNGC 2 cut(s) 419, 458
BstNI CCWGG 2 cut(s) 311, 730
BstSCI CCNGG 2 cut(s) 309, 728
BstSFI CTRYAG 4 cut(s) 249, 490, 897, 1095
BstSLI GKGCMC 1 cut(s) 1229
BstV1I GCAGC 7 cut(s) 160, 883, 911, 969, 1081, 1159, 1336
BstV2I GAAGAC 2 cut(s) 106, 725
BstX2I RGATCY 1 cut(s) 885
BstXI CCANNNNNNTGG 1 cut(s) 222
BstYI RGATCY 1 cut(s) 885
Bsu36I CCTNAGG 1 cut(s) 234
BsuRI GGCC 3 cut(s) 239, 1183, 1314
BtsCI GGATG 6 cut(s) 344, 518, 924, 969, 984, 1365
BtsI GCAGTG 1 cut(s) 459
BtsIMutI CAGTG 1 cut(s) 459
CaiI CAGNNNCTG 1 cut(s) 1049
CfoI GCGC 2 cut(s) 800, 1275
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 3 cut(s) 143, 179, 314
CseI GACGC 1 cut(s) 1164
Csp6I GTAC 6 cut(s) 28, 262, 379, 687, 792, 1111
CviAII CATG 2 cut(s) 266, 904
CviQI GTAC 6 cut(s) 28, 262, 379, 687, 792, 1111
DdeI CTNAG 8 cut(s) 97, 234, 582, 816, 987, 1042, 1073, 1269
DpnI GATC 3 cut(s) 36, 813, 887
DpnII GATC 3 cut(s) 34, 811, 885
DraIII CACNNNGTG 1 cut(s) 625
Eco130I CCWWGG 2 cut(s) 71, 889
Eco147I AGGCCT 1 cut(s) 239
Eco24I GRGCYC 1 cut(s) 736
Eco31I GGTCTC 1 cut(s) 1011
Eco47I GGWCC 3 cut(s) 143, 179, 314
Eco57I CTGAAG 1 cut(s) 288
Eco81I CCTNAGG 1 cut(s) 234
EcoRII CCWGG 2 cut(s) 309, 728
EcoT14I CCWWGG 2 cut(s) 71, 889
EcoT38I GRGCYC 1 cut(s) 736
ErhI CCWWGG 2 cut(s) 71, 889
Esp3I CGTCTC 1 cut(s) 1182
FaeI CATG 2 cut(s) 269, 907
FaqI GGGAC 2 cut(s) 165, 579
FatI CATG 2 cut(s) 265, 903
FblI GTMKAC 1 cut(s) 616
Fnu4HI GCNGC 7 cut(s) 174, 897, 900, 983, 1095, 1173, 1325
FokI GGATG 6 cut(s) 351, 525, 931, 976, 991, 1372
FriOI GRGCYC 1 cut(s) 736
Fsp4HI GCNGC 7 cut(s) 174, 897, 900, 983, 1095, 1173, 1325
FspBI CTAG 4 cut(s) 72, 188, 959, 1082
GlaI GCGC 2 cut(s) 799, 1274
GluI GCNGC 7 cut(s) 174, 897, 900, 983, 1095, 1173, 1325
GsaI CCCAGC 1 cut(s) 1172
GsuI CTGGAG 2 cut(s) 717, 1071
HaeII RGCGCY 1 cut(s) 801
HaeIII GGCC 3 cut(s) 239, 1183, 1314
HapII CCGG 1 cut(s) 177
HgaI GACGC 1 cut(s) 1164
HhaI GCGC 2 cut(s) 800, 1275
Hin1II CATG 2 cut(s) 269, 907
Hin6I GCGC 2 cut(s) 798, 1273
HinP1I GCGC 2 cut(s) 798, 1273
HindIII AAGCTT 1 cut(s) 1075
HinfI GANTC 9 cut(s) 201, 360, 444, 613, 677, 721, 944, 1053, 1192
HpaII CCGG 1 cut(s) 177
HphI GGTGA 3 cut(s) 68, 355, 622
Hpy166II GTNNAC 4 cut(s) 617, 628, 825, 1227
Hpy188I TCNGA 4 cut(s) 200, 512, 844, 1382
Hpy188III TCNNGA 6 cut(s) 88, 233, 597, 815, 1050, 1082
Hpy8I GTNNAC 4 cut(s) 617, 628, 825, 1227
HpyAV CCTTC 2 cut(s) 194, 603
HpyCH4III ACNGT 2 cut(s) 1115, 1207
HpyCH4V TGCA 7 cut(s) 251, 767, 851, 899, 1097, 1227, 1324
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 458
HpyF3I CTNAG 8 cut(s) 97, 234, 582, 816, 987, 1042, 1073, 1269
Hsp92II CATG 2 cut(s) 269, 907
HspAI GCGC 2 cut(s) 798, 1273
KpnI GGTACC 1 cut(s) 265
Kzo9I GATC 3 cut(s) 34, 811, 885
LmnI GCTCC 1 cut(s) 1211
Lsp1109I GCAGC 7 cut(s) 160, 883, 911, 969, 1081, 1159, 1336
LweI GCATC 2 cut(s) 969, 1311
MaeI CTAG 4 cut(s) 72, 188, 959, 1082
MalI GATC 3 cut(s) 36, 813, 887
MboI GATC 3 cut(s) 34, 811, 885
MboII GAAGA 5 cut(s) 106, 115, 294, 730, 766
MfeI CAATTG 2 cut(s) 147, 690
MflI RGATCY 1 cut(s) 885
MhlI GDGCHC 2 cut(s) 736, 1229
MluCI AATT 8 cut(s) 147, 576, 634, 661, 690, 786, 855, 1245
MlyI GAGTC 5 cut(s) 369, 622, 715, 938, 1062
MmeI TCCRAC 4 cut(s) 490, 976, 1099, 1189
MnlI CCTC 8 cut(s) 113, 124, 128, 151, 229, 694, 968, 1347
MseI TTAA 4 cut(s) 353, 485, 500, 785
MspA1I CMGCKG 1 cut(s) 1172
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 2 cut(s) 311, 730
MunI CAATTG 2 cut(s) 147, 690
MvaI CCWGG 2 cut(s) 311, 730
MwoI GCNNNNNNNGC 2 cut(s) 419, 458
NdeII GATC 3 cut(s) 34, 811, 885
NlaIII CATG 2 cut(s) 269, 907
NlaIV GGNNCC 6 cut(s) 181, 263, 315, 329, 887, 1018
NmeAIII GCCGAG 1 cut(s) 1159
PasI CCCWGGG 2 cut(s) 310, 729
PceI AGGCCT 1 cut(s) 239
PfeI GAWTC 4 cut(s) 201, 444, 677, 1192
PflFI GACNNNGTC 1 cut(s) 164
PflMI CCANNNNNTGG 1 cut(s) 1028
PkrI GCNGC 7 cut(s) 175, 898, 901, 984, 1096, 1174, 1326
PleI GAGTC 5 cut(s) 368, 621, 715, 938, 1061
PpsI GAGTC 5 cut(s) 368, 621, 715, 938, 1061
Psp6I CCWGG 2 cut(s) 309, 728
PspFI CCCAGC 1 cut(s) 1168
PspGI CCWGG 2 cut(s) 309, 728
PspN4I GGNNCC 6 cut(s) 181, 263, 315, 329, 887, 1018
PspPI GGNCC 3 cut(s) 143, 179, 314
PstI CTGCAG 3 cut(s) 253, 901, 1099
PstNI CAGNNNCTG 1 cut(s) 1049
PsuI RGATCY 1 cut(s) 885
PsyI GACNNNGTC 1 cut(s) 164
PvuII CAGCTG 1 cut(s) 1172
RsaI GTAC 6 cut(s) 29, 263, 380, 688, 793, 1112
RsaNI GTAC 6 cut(s) 28, 262, 379, 687, 792, 1111
SaqAI TTAA 4 cut(s) 353, 485, 500, 785
SatI GCNGC 7 cut(s) 174, 897, 900, 983, 1095, 1173, 1325
Sau3AI GATC 3 cut(s) 34, 811, 885
Sau96I GGNCC 3 cut(s) 143, 179, 314
SchI GAGTC 5 cut(s) 369, 622, 715, 938, 1062
ScrFI CCNGG 2 cut(s) 311, 730
SduI GDGCHC 2 cut(s) 736, 1229
SfaNI GCATC 2 cut(s) 969, 1311
SfcI CTRYAG 4 cut(s) 249, 490, 897, 1095
SinI GGWCC 3 cut(s) 143, 179, 314
Sse9I AATT 8 cut(s) 147, 576, 634, 661, 690, 786, 855, 1245
SseBI AGGCCT 1 cut(s) 239
SsiI CCGC 2 cut(s) 141, 1003
SspMI CTAG 4 cut(s) 72, 188, 959, 1082
StuI AGGCCT 1 cut(s) 239
StyD4I CCNGG 2 cut(s) 309, 728
StyI CCWWGG 2 cut(s) 71, 889
TaaI ACNGT 2 cut(s) 1115, 1207
TaqI TCGA 2 cut(s) 447, 680
TasI AATT 8 cut(s) 147, 576, 634, 661, 690, 786, 855, 1245
TatI WGTACW 3 cut(s) 27, 686, 1110
TfiI GAWTC 4 cut(s) 201, 444, 677, 1192
Tru1I TTAA 4 cut(s) 353, 485, 500, 785
Tru9I TTAA 4 cut(s) 353, 485, 500, 785
TscAI CASTG 1 cut(s) 459
TseI GCWGC 7 cut(s) 173, 896, 899, 982, 1094, 1172, 1324
TspDTI ATGAA 5 cut(s) 208, 535, 1126, 1175, 1376
TspRI CASTG 1 cut(s) 459
Tth111I GACNNNGTC 1 cut(s) 164
Van91I CCANNNNNTGG 1 cut(s) 1028
VneI GTGCAC 1 cut(s) 1225
VpaK11BI GGWCC 3 cut(s) 143, 179, 314
XapI RAATTY 2 cut(s) 634, 661
XbaI TCTAGA 1 cut(s) 1081
XcmI CCANNNNNNNNNTGG 1 cut(s) 910
XmaJI CCTAGG 1 cut(s) 71
XmiI GTMKAC 1 cut(s) 616
XspI CTAG 4 cut(s) 72, 188, 959, 1082
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.