FvH4_5g24050

polyamine transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
15303680 .. 15306459
2780 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24050.t1

Sequence Viewer

Length: 1419 bp
ATGGGAGAGTACAACAATCCCGAATATGTTGGAGTTAGTGAAGCAAATTCCCCTAGGGTAAATGACTTCAAGAAAGTCTCAGTCCTCCCCCTTGTCTTCCTCATCTTTTATGAGGTATCTGGCGGTCCATTTGGTGTTGAGGAAAGTGTCCAGGCTGCCGGTCCCCTTCTAGCACTAATCGGATTCTTGGTGTTTCCATTCATTTGGAGTGTTCCTGAGGCCTTGATTACTGCAGAAATGGGTACCATGTTCCCTGTGAATGGGGGTTATGTGGTTTGGGTTTCTTCAGCCCTGGGTCCATATTGGGGGTTCCAACAAGGATGGGTGAAATGGTTAAGTGGAGTCATTGATAATGCTTTGTACCCTGTTCTGTTTCTGGACTACTTGAAGTCAGCCATACCAGCTTTAGGCGGTGGAGTTCCAAGAACCGCAGCAGTGTTAGCTTTGACATTGCTTCTCACTTACTTAAACTATAGGGGTTTAACCATTGTCGGATGGGTTGCTATACTTTTAGGGATTTTCTCGTTCATTCCTTTTGTGGTTATGGGACTTGTGGCAATTCCTAAGTTTAAGCCTTCAAGATGGTTAGTGGTGAGTCTACACAATGTGGACTGGAATTTGTATTTGAACACTCTCTTTTGGAATTTGAACTATTGGGATTCAATAAGTACACTTGCTGGAGAGGTAAAGAACCCAAAGAAGACTCTCCCCAAGGCGCTCTTTTATGCTTTGATTTTGGTTGTTGTTGGATATTTCTTCCCCCTTTTATTTGGTACTGGCGCTGTTCCACTTGATCGTGAGTTGTGGACTGATGGCTACTTCTCTGATATTGCAAAAATTGTTGGGGGAGTTTGGTTGAGATGGTGGATCCAAGGGGCTGCAGCCATGTCAAATATGGGGATGTTTGTGGCTGAAATGAATAGCGACTCTTTCCAACTTCTAGGGATGGCAGAAAGAGGGATGTTGCCTGAGTGTTTTGGTAAGCGGTCTCGTTATGGAACCCCAGTCATTGGCATTTTGTTCTCAGCTTCTGGAGTCCTTTTGCTATCTTGGCTAAGCTTTCAAGAGATTGTAGCTGCAGAAAACTTCTTGTACTGTGTTGGAATGATTTTGGAGTTCATAGCATTTATACGATTACGAATGAAGTACCCAGCTGCGTCTCGGCCTTACAAGATTCCTATTGGAACAGTTGGAGCTGTTCTTTTGTGCACCCCACCAACCCTACTAATTGGTGTAGTGTTGGCTCTTTCTCAGCTCAAGGTTGTTGTTGTGAGCCTTATTGCTATAGTGATTGGCCTTGTGATGCAGCCCTGTCTCAAATATGTTGAGAGAAAGAGGTGGATAAAGTTCTCCATCAGCTTTGATCTCCCAGATCTTCAGGGTGCTAATCAGGAGAGTGTCAACTCCTTAACAGATTAG

Protein Analysis

473

Amino Acids

52.13

Weight (kDa)

8.18

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 30 - 404 2.1e-39 Amino acid permease
AA_permease PF00324 49 - 418 4.7e-19 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 242
AccB7I CCANNNNNTGG 1 cut(s) 1010
AccI GTMKAC 1 cut(s) 598
AciI CCGC 4 cut(s) 123, 411, 429, 985
AclWI GGATC 2 cut(s) 862, 875
AcsI RAATTY 3 cut(s) 46, 616, 643
AcuI CTGAAG 2 cut(s) 270, 1361
AdeI CACNNNGTG 1 cut(s) 607
AfaI GTAC 7 cut(s) 11, 244, 362, 670, 775, 1094, 1148
AfiI CCNNNNNNNGG 4 cut(s) 260, 305, 407, 1010
AgsI TTSAA 7 cut(s) 70, 388, 579, 628, 649, 663, 1064
AjnI CCWGG 2 cut(s) 150, 291
AluBI AGCT 9 cut(s) 404, 443, 1028, 1059, 1076, 1154, 1196, 1255, 1359
AluI AGCT 9 cut(s) 404, 443, 1028, 1059, 1076, 1154, 1196, 1255, 1359
Alw21I GWGCWC 1 cut(s) 1211
Alw26I GTCTC 4 cut(s) 82, 993, 1164, 1319
Alw44I GTGCAC 1 cut(s) 1207
AlwI GGATC 2 cut(s) 862, 875
AlwNI CAGNNNCTG 1 cut(s) 1031
AoxI GGCC 3 cut(s) 219, 1163, 1294
ApaLI GTGCAC 1 cut(s) 1207
ApeKI GCWGC 7 cut(s) 155, 431, 878, 881, 1076, 1154, 1306
ApoI RAATTY 3 cut(s) 46, 616, 643
Asp718I GGTACC 1 cut(s) 242
AspA2I CCTAGG 1 cut(s) 53
AspLEI GCGC 2 cut(s) 718, 782
AspS9I GGNCC 3 cut(s) 125, 161, 296
AsuHPI GGTGA 2 cut(s) 337, 604
AvaII GGWCC 3 cut(s) 125, 161, 296
AvrII CCTAGG 1 cut(s) 53
AxyI CCTNAGG 1 cut(s) 216
BaeGI GKGCMC 1 cut(s) 1211
BamHI GGATCC 1 cut(s) 867
BanI GGYRCC 1 cut(s) 242
BbsI GAAGAC 2 cut(s) 88, 707
Bbv12I GWGCWC 1 cut(s) 1211
BbvI GCAGC 7 cut(s) 142, 443, 865, 893, 1063, 1141, 1318
BccI CCATC 7 cut(s) 315, 489, 576, 806, 855, 940, 1361
BciT130I CCWGG 2 cut(s) 152, 293
BcoDI GTCTC 4 cut(s) 82, 993, 1164, 1319
BfaI CTAG 3 cut(s) 54, 170, 941
BfmI CTRYAG 5 cut(s) 231, 472, 879, 1077, 1284
BfoI RGCGCY 2 cut(s) 719, 783
BglII AGATCT 1 cut(s) 1372
BisI GCNGC 7 cut(s) 156, 432, 879, 882, 1077, 1155, 1307
BlnI CCTAGG 1 cut(s) 53
BlpI GCTNAGC 1 cut(s) 1055
BlsI GCNGC 7 cut(s) 157, 433, 880, 883, 1078, 1156, 1308
Bme1390I CCNGG 2 cut(s) 152, 293
Bme18I GGWCC 3 cut(s) 125, 161, 296
BmgT120I GGNCC 3 cut(s) 125, 161, 296
BmiI GGNNCC 6 cut(s) 163, 244, 297, 311, 869, 1000
BmrFI CCNGG 2 cut(s) 152, 293
BmrI ACTGGG 1 cut(s) 998
BmsI GCATC 1 cut(s) 1293
BmuI ACTGGG 1 cut(s) 998
BpiI GAAGAC 2 cut(s) 88, 707
BpmI CTGGAG 2 cut(s) 699, 1053
Bpu1102I GCTNAGC 1 cut(s) 1055
BpuEI CTTGAG 1 cut(s) 1241
BsaI GGTCTC 1 cut(s) 993
BsaJI CCNNGG 5 cut(s) 53, 291, 292, 711, 871
Bsc4I CCNNNNNNNGG 4 cut(s) 260, 305, 407, 1010
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 3 cut(s) 617, 781, 1004
Bse21I CCTNAGG 1 cut(s) 216
Bse3DI GCAATG 1 cut(s) 449
BseBI CCWGG 2 cut(s) 152, 293
BseDI CCNNGG 5 cut(s) 53, 291, 292, 711, 871
BseGI GGATG 5 cut(s) 326, 500, 906, 951, 966
BseLI CCNNNNNNNGG 4 cut(s) 260, 305, 407, 1010
BseMI GCAATG 1 cut(s) 449
BseMII CTCAG 5 cut(s) 93, 207, 960, 1038, 1265
BseNI ACTGG 3 cut(s) 617, 781, 1004
BseSI GKGCMC 1 cut(s) 1211
BseXI GCAGC 7 cut(s) 142, 443, 865, 893, 1063, 1141, 1318
BseYI CCCAGC 1 cut(s) 1150
BshFI GGCC 3 cut(s) 221, 1165, 1296
BshNI GGYRCC 1 cut(s) 242
BsiHKAI GWGCWC 1 cut(s) 1211
BsiSI CCGG 1 cut(s) 159
BslFI GGGAC 2 cut(s) 147, 561
BslI CCNNNNNNNGG 4 cut(s) 260, 305, 407, 1010
BsmAI GTCTC 4 cut(s) 82, 993, 1164, 1319
BsmBI CGTCTC 1 cut(s) 1164
BsmFI GGGAC 2 cut(s) 147, 561
BsnI GGCC 3 cut(s) 221, 1165, 1296
Bso31I GGTCTC 1 cut(s) 993
Bsp1286I GDGCHC 1 cut(s) 1211
Bsp143I GATC 4 cut(s) 793, 867, 1363, 1372
Bsp1720I GCTNAGC 1 cut(s) 1055
BspACI CCGC 4 cut(s) 123, 411, 429, 985
BspANI GGCC 3 cut(s) 221, 1165, 1296
BspCNI CTCAG 5 cut(s) 92, 208, 961, 1037, 1264
BspLI GGNNCC 6 cut(s) 163, 244, 297, 311, 869, 1000
BspMAI CTGCAG 3 cut(s) 235, 883, 1081
BspPI GGATC 2 cut(s) 862, 875
BspT107I GGYRCC 1 cut(s) 242
BspTNI GGTCTC 1 cut(s) 993
BsrDI GCAATG 1 cut(s) 449
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 3 cut(s) 617, 781, 1004
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 5 cut(s) 53, 291, 292, 711, 871
BssMI GATC 4 cut(s) 793, 867, 1363, 1372
BssT1I CCWWGG 3 cut(s) 53, 711, 871
Bst2UI CCWGG 2 cut(s) 152, 293
Bst4CI ACNGT 2 cut(s) 1097, 1189
BstDEI CTNAG 7 cut(s) 79, 216, 564, 969, 1024, 1055, 1251
BstF5I GGATG 5 cut(s) 326, 500, 906, 951, 966
BstH2I RGCGCY 2 cut(s) 719, 783
BstHHI GCGC 2 cut(s) 718, 782
BstKTI GATC 4 cut(s) 796, 870, 1366, 1375
BstMAI GTCTC 4 cut(s) 82, 993, 1164, 1319
BstMBI GATC 4 cut(s) 793, 867, 1363, 1372
BstMWI GCNNNNNNNGC 3 cut(s) 401, 440, 1051
BstNI CCWGG 2 cut(s) 152, 293
BstSCI CCNGG 2 cut(s) 150, 291
BstSFI CTRYAG 5 cut(s) 231, 472, 879, 1077, 1284
BstSLI GKGCMC 1 cut(s) 1211
BstV1I GCAGC 7 cut(s) 142, 443, 865, 893, 1063, 1141, 1318
BstV2I GAAGAC 2 cut(s) 88, 707
BstX2I RGATCY 2 cut(s) 867, 1372
BstXI CCANNNNNNTGG 1 cut(s) 204
BstYI RGATCY 2 cut(s) 867, 1372
Bsu36I CCTNAGG 1 cut(s) 216
BsuRI GGCC 3 cut(s) 221, 1165, 1296
BtsCI GGATG 5 cut(s) 326, 500, 906, 951, 966
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 1 cut(s) 441
CaiI CAGNNNCTG 1 cut(s) 1031
CfoI GCGC 2 cut(s) 718, 782
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 3 cut(s) 125, 161, 296
CseI GACGC 1 cut(s) 1146
Csp6I GTAC 7 cut(s) 10, 243, 361, 669, 774, 1093, 1147
CviAII CATG 2 cut(s) 247, 886
CviQI GTAC 7 cut(s) 10, 243, 361, 669, 774, 1093, 1147
DdeI CTNAG 7 cut(s) 79, 216, 564, 969, 1024, 1055, 1251
DpnI GATC 4 cut(s) 795, 869, 1365, 1374
DpnII GATC 4 cut(s) 793, 867, 1363, 1372
DraIII CACNNNGTG 1 cut(s) 607
Eco130I CCWWGG 3 cut(s) 53, 711, 871
Eco147I AGGCCT 1 cut(s) 221
Eco31I GGTCTC 1 cut(s) 993
Eco47I GGWCC 3 cut(s) 125, 161, 296
Eco57I CTGAAG 2 cut(s) 270, 1361
Eco81I CCTNAGG 1 cut(s) 216
EcoRII CCWGG 2 cut(s) 150, 291
EcoT14I CCWWGG 3 cut(s) 53, 711, 871
ErhI CCWWGG 3 cut(s) 53, 711, 871
Esp3I CGTCTC 1 cut(s) 1164
FaeI CATG 2 cut(s) 250, 889
FalI AAGNNNNNCTT 2 cut(s) 704, 736
FaqI GGGAC 2 cut(s) 147, 561
FatI CATG 2 cut(s) 246, 885
FblI GTMKAC 1 cut(s) 598
Fnu4HI GCNGC 7 cut(s) 156, 432, 879, 882, 1077, 1155, 1307
FokI GGATG 5 cut(s) 333, 507, 913, 958, 973
Fsp4HI GCNGC 7 cut(s) 156, 432, 879, 882, 1077, 1155, 1307
FspBI CTAG 3 cut(s) 54, 170, 941
GlaI GCGC 2 cut(s) 717, 781
GluI GCNGC 7 cut(s) 156, 432, 879, 882, 1077, 1155, 1307
GsaI CCCAGC 1 cut(s) 1154
GsuI CTGGAG 2 cut(s) 699, 1053
HaeII RGCGCY 2 cut(s) 719, 783
HaeIII GGCC 3 cut(s) 221, 1165, 1296
HapII CCGG 1 cut(s) 159
HgaI GACGC 1 cut(s) 1146
HhaI GCGC 2 cut(s) 718, 782
Hin1II CATG 2 cut(s) 250, 889
Hin6I GCGC 2 cut(s) 716, 780
HinP1I GCGC 2 cut(s) 716, 780
HincII GTYRAC 1 cut(s) 1402
HindII GTYRAC 1 cut(s) 1402
HindIII AAGCTT 1 cut(s) 1057
HinfI GANTC 8 cut(s) 183, 342, 595, 659, 703, 926, 1035, 1174
HpaII CCGG 1 cut(s) 159
HphI GGTGA 2 cut(s) 337, 604
Hpy166II GTNNAC 6 cut(s) 599, 610, 671, 807, 1209, 1402
Hpy188I TCNGA 3 cut(s) 182, 494, 826
Hpy188III TCNNGA 9 cut(s) 20, 70, 215, 377, 579, 797, 1032, 1064, 1391
Hpy8I GTNNAC 6 cut(s) 599, 610, 671, 807, 1209, 1402
HpyAV CCTTC 2 cut(s) 176, 585
HpyCH4III ACNGT 2 cut(s) 1097, 1189
HpyCH4V TGCA 6 cut(s) 233, 833, 881, 1079, 1209, 1306
HpyF10VI GCNNNNNNNGC 3 cut(s) 401, 440, 1051
HpyF3I CTNAG 7 cut(s) 79, 216, 564, 969, 1024, 1055, 1251
Hsp92II CATG 2 cut(s) 250, 889
HspAI GCGC 2 cut(s) 716, 780
KpnI GGTACC 1 cut(s) 246
Kzo9I GATC 4 cut(s) 793, 867, 1363, 1372
LmnI GCTCC 1 cut(s) 1193
Lsp1109I GCAGC 7 cut(s) 142, 443, 865, 893, 1063, 1141, 1318
LweI GCATC 1 cut(s) 1293
MaeI CTAG 3 cut(s) 54, 170, 941
MalI GATC 4 cut(s) 795, 869, 1365, 1374
MboI GATC 4 cut(s) 793, 867, 1363, 1372
MboII GAAGA 5 cut(s) 88, 276, 712, 748, 1367
MflI RGATCY 2 cut(s) 867, 1372
MhlI GDGCHC 1 cut(s) 1211
MluCI AATT 6 cut(s) 46, 558, 616, 643, 837, 1227
MlyI GAGTC 5 cut(s) 351, 604, 697, 920, 1044
MmeI TCCRAC 7 cut(s) 10, 337, 472, 727, 958, 1081, 1171
MnlI CCTC 8 cut(s) 95, 106, 110, 133, 211, 676, 950, 1329
MseI TTAA 5 cut(s) 335, 467, 482, 570, 1409
MspA1I CMGCKG 1 cut(s) 1154
MspI CCGG 1 cut(s) 159
MspR9I CCNGG 2 cut(s) 152, 293
MvaI CCWGG 2 cut(s) 152, 293
MwoI GCNNNNNNNGC 3 cut(s) 401, 440, 1051
NdeII GATC 4 cut(s) 793, 867, 1363, 1372
NlaIII CATG 2 cut(s) 250, 889
NlaIV GGNNCC 6 cut(s) 163, 244, 297, 311, 869, 1000
NmeAIII GCCGAG 1 cut(s) 1141
PasI CCCWGGG 1 cut(s) 292
PceI AGGCCT 1 cut(s) 221
PfeI GAWTC 3 cut(s) 183, 659, 1174
PflMI CCANNNNNTGG 1 cut(s) 1010
PkrI GCNGC 7 cut(s) 157, 433, 880, 883, 1078, 1156, 1308
PleI GAGTC 5 cut(s) 350, 603, 697, 920, 1043
PpsI GAGTC 5 cut(s) 350, 603, 697, 920, 1043
Psp6I CCWGG 2 cut(s) 150, 291
PspFI CCCAGC 1 cut(s) 1150
PspGI CCWGG 2 cut(s) 150, 291
PspN4I GGNNCC 6 cut(s) 163, 244, 297, 311, 869, 1000
PspPI GGNCC 3 cut(s) 125, 161, 296
PstI CTGCAG 3 cut(s) 235, 883, 1081
PstNI CAGNNNCTG 1 cut(s) 1031
PsuI RGATCY 2 cut(s) 867, 1372
PvuII CAGCTG 1 cut(s) 1154
RsaI GTAC 7 cut(s) 11, 244, 362, 670, 775, 1094, 1148
RsaNI GTAC 7 cut(s) 10, 243, 361, 669, 774, 1093, 1147
SaqAI TTAA 5 cut(s) 335, 467, 482, 570, 1409
SatI GCNGC 7 cut(s) 156, 432, 879, 882, 1077, 1155, 1307
Sau3AI GATC 4 cut(s) 793, 867, 1363, 1372
Sau96I GGNCC 3 cut(s) 125, 161, 296
SchI GAGTC 5 cut(s) 351, 604, 697, 920, 1044
ScrFI CCNGG 2 cut(s) 152, 293
SduI GDGCHC 1 cut(s) 1211
SfaNI GCATC 1 cut(s) 1293
SfcI CTRYAG 5 cut(s) 231, 472, 879, 1077, 1284
SinI GGWCC 3 cut(s) 125, 161, 296
SmlI CTYRAG 1 cut(s) 1256
SmoI CTYRAG 1 cut(s) 1256
Sse9I AATT 6 cut(s) 46, 558, 616, 643, 837, 1227
SseBI AGGCCT 1 cut(s) 221
SsiI CCGC 4 cut(s) 123, 411, 429, 985
SspMI CTAG 3 cut(s) 54, 170, 941
StuI AGGCCT 1 cut(s) 221
StyD4I CCNGG 2 cut(s) 150, 291
StyI CCWWGG 3 cut(s) 53, 711, 871
TaaI ACNGT 2 cut(s) 1097, 1189
TasI AATT 6 cut(s) 46, 558, 616, 643, 837, 1227
TatI WGTACW 3 cut(s) 9, 668, 1092
TfiI GAWTC 3 cut(s) 183, 659, 1174
Tru1I TTAA 5 cut(s) 335, 467, 482, 570, 1409
Tru9I TTAA 5 cut(s) 335, 467, 482, 570, 1409
TscAI CASTG 1 cut(s) 441
TseI GCWGC 7 cut(s) 155, 431, 878, 881, 1076, 1154, 1306
TspDTI ATGAA 5 cut(s) 190, 517, 932, 1108, 1157
TspRI CASTG 1 cut(s) 441
Van91I CCANNNNNTGG 1 cut(s) 1010
VneI GTGCAC 1 cut(s) 1207
VpaK11BI GGWCC 3 cut(s) 125, 161, 296
XapI RAATTY 3 cut(s) 46, 616, 643
XcmI CCANNNNNNNNNTGG 1 cut(s) 892
XmaJI CCTAGG 1 cut(s) 53
XmiI GTMKAC 1 cut(s) 598
XspI CTAG 3 cut(s) 54, 170, 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.