Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005646

Physical Location & Seq

Genomic Coordinates Forward (+)

14014796 .. 14015508

Gene Structure 713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G36960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGACTCGTTTGTTGCCTTACAAAGGTGGAGATTTTTTGGGACCGGATTTTCTCACTTTTATTGATCTATGCGTCCAAGTCCGAGGTATACCTCTACCTTATCTTTCTGAATTAACTGTGAGCTTCATAGCTGGAACGTTGGGGCCTATTCTTGAGATGGAATTTAATCAAGATACTTCAACTTATGTTGCCTTTATCCGTGTTAAGATCAGACTTGTATTCATAGACCGTCTTCGGTTTTTTCGGAGAGAGGAAGCTGCTGCTTCTAATACTATCACTGATCAAACTCATATGACTAGCTCAAACAGTTCAGACATATCCCCGGCATCACCAATATCACAGCCTCCTCTTCCGGCATCTTTACCTTCTCATGACTCTTACTTTGATGCGGGAATTCAGGCTTCCAGACTTGTTAATCCAAGAGCTATATCTCAGCATCACTTTTCTAGCTCTTATTCTGACTTTAAGGGCAAAGAAAAAGCAAAAATTAAGATTGGTGAATGCTCAAAACGTAAAAAGGATAAGCAAGTTGATTCTGGTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005227 GO:0005253 GO:0005261 GO:0005267 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006820 GO:0008150 GO:0008324 GO:0008509 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015103 GO:0015267 GO:0015269 GO:0015318 GO:0015672 GO:0015698 GO:0022803 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0022890 GO:0030001 GO:0032991 GO:0034220 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046873 GO:0051082 GO:0051179 GO:0051234 GO:0055085 GO:0061077 GO:0071804 GO:0071805 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

181

Amino Acids

20.13

Weight (kDa)

8.89

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36960 AT1G43680 AT1G48095 AT2G02103 AT2G13450 AT2G13500 AT2G13510 AT2G16676 AT2G17905 AT2G17920 AT2G31590 AT2G41590 AT3G24070 AT3G31430 AT3G42140 AT3G47920 AT3G57587 AT4G02000 AT4G04730 AT5G18636 AT5G25200 AT5G25600 AT5G35737 AT5G36225 AT5G36228 AT5G40595 AT5G51195
rosa_multiflora	Rmu_sc0003512.1_g000014

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	88
AciI	CCGC	1 cut(s)	389
AclI	AACGTT	1 cut(s)	137
AcsI	RAATTY	2 cut(s)	161, 393
AfaI	GTAC	1 cut(s)	541
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	180
AluBI	AGCT	6 cut(s)	123, 131, 257, 300, 425, 450
AluI	AGCT	6 cut(s)	123, 131, 257, 300, 425, 450
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	257, 260
ApoI	RAATTY	2 cut(s)	161, 393
ArsI	GACNNNNNNTTYG	2 cut(s)	365, 397
AspS9I	GGNCC	2 cut(s)	41, 143
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	2 cut(s)	321, 509
AvaII	GGWCC	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	224
BbvI	GCAGC	2 cut(s)	244, 247
BccI	CCATC	1 cut(s)	151
BclI	TGATCA	1 cut(s)	280
BcnI	CCSGG	1 cut(s)	323
BfaI	CTAG	2 cut(s)	297, 447
BisI	GCNGC	2 cut(s)	258, 261
BlsI	GCNGC	2 cut(s)	259, 262
Bme1390I	CCNGG	1 cut(s)	323
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	2 cut(s)	41, 143
BmiI	GGNNCC	2 cut(s)	42, 144
BmrFI	CCNGG	1 cut(s)	323
BmsI	GCATC	4 cut(s)	335, 365, 376, 445
BpiI	GAAGAC	1 cut(s)	224
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	323
BsaJI	CCNNGG	2 cut(s)	82, 321
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
BseDI	CCNNGG	2 cut(s)	82, 321
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	446
BseRI	GAGGAG	1 cut(s)	336
BseXI	GCAGC	2 cut(s)	244, 247
BshFI	GGCC	1 cut(s)	145
BsiSI	CCGG	3 cut(s)	44, 323, 353
BslFI	GGGAC	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	54
BsmI	GAATGC	1 cut(s)	506
BsnI	GGCC	1 cut(s)	145
Bsp143I	GATC	3 cut(s)	64, 207, 280
BspACI	CCGC	1 cut(s)	389
BspANI	GGCC	1 cut(s)	145
BspCNI	CTCAG	1 cut(s)	445
BspHI	TCATGA	1 cut(s)	370
BspLI	GGNNCC	2 cut(s)	42, 144
BssECI	CCNNGG	2 cut(s)	82, 321
BssMI	GATC	3 cut(s)	64, 207, 280
BssNAI	GTATAC	1 cut(s)	89
Bst1107I	GTATAC	1 cut(s)	89
Bst4CI	ACNGT	3 cut(s)	118, 230, 308
Bst6I	CTCTTC	1 cut(s)	354
BstDEI	CTNAG	1 cut(s)	432
BstENI	CCTNNNNNAGG	1 cut(s)	21
BstKTI	GATC	3 cut(s)	67, 210, 283
BstMBI	GATC	3 cut(s)	64, 207, 280
BstSCI	CCNGG	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	244, 247
BstV2I	GAAGAC	1 cut(s)	224
BstZ17I	GTATAC	1 cut(s)	89
BsuRI	GGCC	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	276
CciI	TCATGA	1 cut(s)	370
Cfr13I	GGNCC	2 cut(s)	41, 143
CseI	GACGC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	540
CviAII	CATG	1 cut(s)	371
CviJI	RGCY	9 cut(s)	123, 131, 145, 257, 300, 343, 401, 425, 450
CviKI_1	RGCY	9 cut(s)	123, 131, 145, 257, 300, 343, 401, 425, 450
CviQI	GTAC	1 cut(s)	540
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	3 cut(s)	66, 209, 282
DpnII	GATC	3 cut(s)	64, 207, 280
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	41
EcoNI	CCTNNNNNAGG	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	143
EcoRI	GAATTC	1 cut(s)	393
FaeI	CATG	1 cut(s)	374
FaqI	GGGAC	1 cut(s)	54
FatI	CATG	1 cut(s)	370
FauI	CCCGC	1 cut(s)	382
FauNDI	CATATG	1 cut(s)	291
FbaI	TGATCA	1 cut(s)	280
FblI	GTMKAC	1 cut(s)	88
Fnu4HI	GCNGC	2 cut(s)	258, 261
Fsp4HI	GCNGC	2 cut(s)	258, 261
FspBI	CTAG	2 cut(s)	297, 447
GluI	GCNGC	2 cut(s)	258, 261
HaeIII	GGCC	1 cut(s)	145
HapII	CCGG	3 cut(s)	44, 323, 353
HgaI	GACGC	1 cut(s)	61
Hin1II	CATG	1 cut(s)	374
HinfI	GANTC	3 cut(s)	4, 374, 533
HpaII	CCGG	3 cut(s)	44, 323, 353
HphI	GGTGA	2 cut(s)	321, 509
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	6 cut(s)	83, 109, 212, 246, 313, 460
Hpy188III	TCNNGA	4 cut(s)	152, 170, 371, 405
Hpy8I	GTNNAC	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	375
HpyCH4III	ACNGT	3 cut(s)	118, 230, 308
HpyCH4IV	ACGT	2 cut(s)	137, 511
HpyF3I	CTNAG	1 cut(s)	432
HpySE526I	ACGT	2 cut(s)	137, 511
Hsp92II	CATG	1 cut(s)	374
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	3 cut(s)	64, 207, 280
LpnPI	CCDG	7 cut(s)	57, 117, 336, 366, 383, 418, 522
Lsp1109I	GCAGC	2 cut(s)	244, 247
LweI	GCATC	4 cut(s)	335, 365, 376, 445
MaeI	CTAG	2 cut(s)	297, 447
MaeII	ACGT	2 cut(s)	137, 511
MalI	GATC	3 cut(s)	66, 209, 282
MboI	GATC	3 cut(s)	64, 207, 280
MboII	GAAGA	2 cut(s)	224, 341
MluCI	AATT	4 cut(s)	110, 161, 393, 486
MlyI	GAGTC	1 cut(s)	368
MnlI	CCTC	5 cut(s)	77, 102, 244, 354, 357
MseI	TTAA	6 cut(s)	113, 165, 204, 414, 465, 489
MspI	CCGG	3 cut(s)	44, 323, 353
MspR9I	CCNGG	1 cut(s)	323
Mva1269I	GAATGC	1 cut(s)	506
NciI	CCSGG	1 cut(s)	323
NdeI	CATATG	1 cut(s)	291
NdeII	GATC	3 cut(s)	64, 207, 280
NlaIII	CATG	1 cut(s)	374
NlaIV	GGNNCC	2 cut(s)	42, 144
PagI	TCATGA	1 cut(s)	370
PctI	GAATGC	1 cut(s)	506
PfeI	GAWTC	1 cut(s)	533
PkrI	GCNGC	2 cut(s)	259, 262
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
Psp1406I	AACGTT	1 cut(s)	137
PspN4I	GGNNCC	2 cut(s)	42, 144
PspPI	GGNCC	2 cut(s)	41, 143
RsaI	GTAC	1 cut(s)	541
RsaNI	GTAC	1 cut(s)	540
SaqAI	TTAA	6 cut(s)	113, 165, 204, 414, 465, 489
SatI	GCNGC	2 cut(s)	258, 261
Sau3AI	GATC	3 cut(s)	64, 207, 280
Sau96I	GGNCC	2 cut(s)	41, 143
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	1 cut(s)	323
SfaNI	GCATC	4 cut(s)	335, 365, 376, 445
SinI	GGWCC	1 cut(s)	41
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	4 cut(s)	110, 161, 393, 486
SsiI	CCGC	1 cut(s)	389
SspMI	CTAG	2 cut(s)	297, 447
StyD4I	CCNGG	1 cut(s)	321
TaaI	ACNGT	3 cut(s)	118, 230, 308
TaiI	ACGT	2 cut(s)	140, 514
TasI	AATT	4 cut(s)	110, 161, 393, 486
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	6 cut(s)	113, 165, 204, 414, 465, 489
Tru9I	TTAA	6 cut(s)	113, 165, 204, 414, 465, 489
TscAI	CASTG	1 cut(s)	283
TseI	GCWGC	2 cut(s)	257, 260
TspDTI	ATGAA	2 cut(s)	115, 211
TspGWI	ACGGA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	283
VpaK11BI	GGWCC	1 cut(s)	41
XagI	CCTNNNNNAGG	1 cut(s)	21
XapI	RAATTY	2 cut(s)	161, 393
XmiI	GTMKAC	1 cut(s)	88
XspI	CTAG	2 cut(s)	297, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.