AT2G02103

At4g02000-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005646
Physical Location & Seq
Reverse (-)
530241 .. 531636
1396 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G02103.1

Sequence Viewer

Length: 1212 bp
ATGGCTGATGAGTTGTGGGATGAGATTCAAAACCTAGAATTAGGACAAGAGGATCCGGCCCTTTTCATTCCCCATGAAGCTTATGTGATGGTCGAAGCTTCAAATAACCTAAGTCTGATAGCTAGGCCTCTGAATCCAAGAGTTCAAAATCTTAACTCTGTTGTGGTAGCACTTCCAAGATCATGGGGACTAACGACTCAGGTGCATGGAAGAATTCTTGATGCAACGTATGTCCAGTTCCTTTTTGCAAATGAAATTGATCTACTGATGGTGCAAAGAAGAGAACCGTGGCTTTTCAACAATTGGTTCGTTGCAGCAACTCGATGGCAGGTGGCTCCAGCTCACAACCTTGTCACTACCATTGATCTCTGGGTGCAAATTCGAGGTATTCCCTTACCTTATGTTTCTGAAGAGACAGTTATGGAGATAGCTCACGATCTAGGAGAGATCATTTCATTGGACTTTCATGAGGCTACCTCTCCTCAGATTGCTTTTATTAGAGTTAGAGTTCGTTTTGGTATAACGGACAGACTGAGGTTTTTTCAAAGAGTCATCTTTGACTCTGGTGAAACTGCAACCATCAGGTTCCAATATGAACGACTCCGAAGACTATGTAGTAGCTGTTTCAGATTTACTCACAATCGAGCTTACTGTCCCTACCGTCAACGTCCTCTTAGCATCGCAAGAGAAAGAGCCCTCTTCTGTGATAGTGTTCAAAGATCTTCAATGAACTCACAATCTCAGATGACTGAAAGCTCCTTTCCGGTGCCCTTGACTCCACCTCCAAGAGTGGATCCTCCACCAGTGAATCACGCTGAATTTACAGCTGCCTATCCTCATCTTGCAACAGCAACAAACGAGAATCACAGGGATGTAGGAGAATCAAGCACCTCCAGACAGGATATGTCATCAGGATCAAACAACTTTCTGGCAAGGAGAACTACTCACTTCACAGACCATCGAAGGTGCTTTGAAGGTGGTCAAGCATCAAGACAAAATGAAAACAGGGAACCAAGACGTCCTACTGAAAGGATGAGGTCTCCAACTCATTTTGATCATGTTCAACGCTCTGGAGGGATTCTGAAACCTCCAAAAAAAACGCTAAACCACTCGATCGTTTTCTGTCATTTTTTGGGAAAGATTGCAGGACTAGAAGCATCACAGCTTCAAGACGAAGAAGCCTGCTTAGTAGGGTATGGTTTTTGGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

403

Amino Acids

46.32

Weight (kDa)

6.95

Isoelectric Point (pI)

53.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 33 - 110 5.8e-17 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 172 - 220 9.8e-22 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 319
AatII GACGTC 1 cut(s) 1021
Acc36I ACCTGC 1 cut(s) 319
AccB1I GGYRCC 1 cut(s) 766
AclWI GGATC 5 cut(s) 47, 60, 788, 801, 922
AcsI RAATTY 3 cut(s) 213, 378, 818
AcuI CTGAAG 1 cut(s) 429
AcyI GRCGYC 1 cut(s) 1018
Alw26I GTCTC 2 cut(s) 407, 1044
AlwI GGATC 5 cut(s) 47, 60, 788, 801, 922
AoxI GGCC 2 cut(s) 57, 125
ApeKI GCWGC 2 cut(s) 314, 827
ApoI RAATTY 3 cut(s) 213, 378, 818
AspS9I GGNCC 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 578
BaeGI GKGCMC 1 cut(s) 771
BamHI GGATCC 2 cut(s) 52, 793
BanI GGYRCC 1 cut(s) 766
BanII GRGCYC 1 cut(s) 697
BbsI GAAGAC 1 cut(s) 613
BbvI GCAGC 2 cut(s) 326, 814
BccI CCATC 5 cut(s) 82, 262, 318, 587, 966
BcgI CGANNNNNNTGC 2 cut(s) 184, 218
BclI TGATCA 1 cut(s) 1054
BcoDI GTCTC 2 cut(s) 407, 1044
BfaI CTAG 4 cut(s) 35, 123, 440, 1151
BfuAI ACCTGC 1 cut(s) 319
BglII AGATCT 1 cut(s) 719
BisI GCNGC 2 cut(s) 315, 828
BlsI GCNGC 2 cut(s) 316, 829
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 6 cut(s) 54, 336, 587, 768, 795, 1011
BmsI GCATC 4 cut(s) 211, 687, 995, 1166
BpiI GAAGAC 1 cut(s) 613
BplI GAGNNNNNCTC 4 cut(s) 461, 493, 928, 960
BpmI CTGGAG 3 cut(s) 321, 877, 1092
BsaHI GRCGYC 1 cut(s) 1018
BsaI GGTCTC 1 cut(s) 1044
BsaJI CCNNGG 1 cut(s) 287
BsaWI WCCGGW 1 cut(s) 763
BsaXI ACNNNNNCTCC 2 cut(s) 766, 796
Bse1I ACTGG 2 cut(s) 235, 803
BseDI CCNNGG 1 cut(s) 287
BseGI GGATG 3 cut(s) 25, 877, 1038
BseMII CTCAG 4 cut(s) 212, 497, 524, 755
BseNI ACTGG 2 cut(s) 235, 803
BseRI GAGGAG 1 cut(s) 471
BseSI GKGCMC 1 cut(s) 771
BseXI GCAGC 2 cut(s) 326, 814
Bsh1285I CGRYCG 1 cut(s) 1116
BshFI GGCC 2 cut(s) 59, 127
BshNI GGYRCC 1 cut(s) 766
BsiEI CGRYCG 1 cut(s) 1116
BsiSI CCGG 2 cut(s) 56, 764
BslFI GGGAC 2 cut(s) 201, 639
BsmAI GTCTC 2 cut(s) 407, 1044
BsmFI GGGAC 2 cut(s) 201, 639
BsnI GGCC 2 cut(s) 59, 127
Bso31I GGTCTC 1 cut(s) 1044
Bsp1286I GDGCHC 2 cut(s) 697, 771
BspANI GGCC 2 cut(s) 59, 127
BspCNI CTCAG 4 cut(s) 211, 496, 525, 754
BspHI TCATGA 1 cut(s) 466
BspLI GGNNCC 6 cut(s) 54, 336, 587, 768, 795, 1011
BspMI ACCTGC 1 cut(s) 319
BspPI GGATC 5 cut(s) 47, 60, 788, 801, 922
BspT107I GGYRCC 1 cut(s) 766
BspTNI GGTCTC 1 cut(s) 1044
BsrI ACTGG 2 cut(s) 235, 803
BssECI CCNNGG 1 cut(s) 287
BssNI GRCGYC 1 cut(s) 1018
Bst4CI ACNGT 4 cut(s) 288, 418, 653, 662
Bst6I CTCTTC 3 cut(s) 274, 405, 704
BstACI GRCGYC 1 cut(s) 1018
BstC8I GCNNGC 1 cut(s) 1183
BstDEI CTNAG 7 cut(s) 110, 198, 483, 533, 674, 741, 1186
BstDSI CCRYGG 1 cut(s) 287
BstF5I GGATG 3 cut(s) 25, 877, 1038
BstMAI GTCTC 2 cut(s) 407, 1044
BstMCI CGRYCG 1 cut(s) 1116
BstSLI GKGCMC 1 cut(s) 771
BstV1I GCAGC 2 cut(s) 326, 814
BstV2I GAAGAC 1 cut(s) 613
BstX2I RGATCY 3 cut(s) 52, 719, 793
BstXI CCANNNNNNTGG 1 cut(s) 183
BstYI RGATCY 3 cut(s) 52, 719, 793
BsuRI GGCC 2 cut(s) 59, 127
BtgI CCRYGG 1 cut(s) 287
BtgZI GCGATG 1 cut(s) 664
BtsCI GGATG 3 cut(s) 25, 877, 1038
BtsIMutI CAGTG 1 cut(s) 810
BveI ACCTGC 1 cut(s) 319
Cac8I GCNNGC 1 cut(s) 1183
CciI TCATGA 1 cut(s) 466
Cfr13I GGNCC 1 cut(s) 58
CviAII CATG 5 cut(s) 74, 183, 206, 467, 1058
DdeI CTNAG 7 cut(s) 110, 198, 483, 533, 674, 741, 1186
Eam1104I CTCTTC 3 cut(s) 274, 405, 704
EarI CTCTTC 3 cut(s) 274, 405, 704
Eco147I AGGCCT 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 697
Eco31I GGTCTC 1 cut(s) 1044
Eco57I CTGAAG 1 cut(s) 429
EcoRI GAATTC 1 cut(s) 213
EcoT38I GRGCYC 1 cut(s) 697
FaeI CATG 5 cut(s) 77, 186, 209, 470, 1061
FaqI GGGAC 2 cut(s) 201, 639
FatI CATG 5 cut(s) 73, 182, 205, 466, 1057
FbaI TGATCA 1 cut(s) 1054
Fnu4HI GCNGC 2 cut(s) 315, 828
FokI GGATG 3 cut(s) 32, 884, 1045
FriOI GRGCYC 1 cut(s) 697
Fsp4HI GCNGC 2 cut(s) 315, 828
FspBI CTAG 4 cut(s) 35, 123, 440, 1151
GluI GCNGC 2 cut(s) 315, 828
GsuI CTGGAG 3 cut(s) 321, 877, 1092
HaeIII GGCC 2 cut(s) 59, 127
HapII CCGG 2 cut(s) 56, 764
Hin1I GRCGYC 1 cut(s) 1018
Hin1II CATG 5 cut(s) 77, 186, 209, 470, 1061
HincII GTYRAC 1 cut(s) 665
HindII GTYRAC 1 cut(s) 665
HindIII AAGCTT 2 cut(s) 78, 96
HpaII CCGG 2 cut(s) 56, 764
HphI GGTGA 1 cut(s) 578
Hpy166II GTNNAC 1 cut(s) 665
Hpy188I TCNGA 8 cut(s) 117, 132, 409, 486, 605, 629, 744, 1083
Hpy188III TCNNGA 8 cut(s) 218, 434, 467, 894, 912, 990, 1071, 1169
Hpy8I GTNNAC 1 cut(s) 665
HpyAV CCTTC 2 cut(s) 957, 968
HpyCH4III ACNGT 4 cut(s) 288, 418, 653, 662
HpyCH4IV ACGT 3 cut(s) 227, 667, 1018
HpyCH4V TGCA 9 cut(s) 205, 224, 248, 274, 314, 376, 575, 845, 1145
HpyF3I CTNAG 7 cut(s) 110, 198, 483, 533, 674, 741, 1186
HpySE526I ACGT 3 cut(s) 227, 667, 1018
Hsp92I GRCGYC 1 cut(s) 1018
Hsp92II CATG 5 cut(s) 77, 186, 209, 470, 1061
Ksp22I TGATCA 1 cut(s) 1054
LmnI GCTCC 2 cut(s) 340, 761
Lsp1109I GCAGC 2 cut(s) 326, 814
LweI GCATC 4 cut(s) 211, 687, 995, 1166
MaeI CTAG 4 cut(s) 35, 123, 440, 1151
MaeII ACGT 3 cut(s) 227, 667, 1018
MaeIII GTNAC 1 cut(s) 352
MboII GAAGA 7 cut(s) 222, 291, 422, 618, 691, 714, 1187
MfeI CAATTG 1 cut(s) 301
MflI RGATCY 3 cut(s) 52, 719, 793
MhlI GDGCHC 2 cut(s) 697, 771
MluCI AATT 6 cut(s) 38, 213, 255, 301, 378, 818
MlyI GAGTC 5 cut(s) 190, 554, 558, 594, 769
MmeI TCCRAC 1 cut(s) 1067
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 870
MspA1I CMGCKG 1 cut(s) 827
MspI CCGG 2 cut(s) 56, 764
MunI CAATTG 1 cut(s) 301
NlaIII CATG 5 cut(s) 77, 186, 209, 470, 1061
NlaIV GGNNCC 6 cut(s) 54, 336, 587, 768, 795, 1011
NmuCI GTSAC 1 cut(s) 352
PagI TCATGA 1 cut(s) 466
PaqCI CACCTGC 1 cut(s) 319
PceI AGGCCT 1 cut(s) 127
PfeI GAWTC 6 cut(s) 25, 133, 808, 862, 881, 1078
PkrI GCNGC 2 cut(s) 316, 829
Ple19I CGATCG 1 cut(s) 1116
PleI GAGTC 5 cut(s) 190, 554, 557, 594, 769
PpsI GAGTC 5 cut(s) 190, 554, 557, 594, 769
PspN4I GGNNCC 6 cut(s) 54, 336, 587, 768, 795, 1011
PspPI GGNCC 1 cut(s) 58
PsrI GAACNNNNNNTAC 2 cut(s) 221, 253
PsuI RGATCY 3 cut(s) 52, 719, 793
PvuI CGATCG 1 cut(s) 1116
PvuII CAGCTG 1 cut(s) 827
RseI CAYNNNNRTG 1 cut(s) 870
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 2 cut(s) 315, 828
Sau96I GGNCC 1 cut(s) 58
SchI GAGTC 5 cut(s) 190, 554, 558, 594, 769
SduI GDGCHC 2 cut(s) 697, 771
SfaNI GCATC 4 cut(s) 211, 687, 995, 1166
SmiMI CAYNNNNRTG 1 cut(s) 870
Sse9I AATT 6 cut(s) 38, 213, 255, 301, 378, 818
SseBI AGGCCT 1 cut(s) 127
SspMI CTAG 4 cut(s) 35, 123, 440, 1151
StuI AGGCCT 1 cut(s) 127
TaaI ACNGT 4 cut(s) 288, 418, 653, 662
TaiI ACGT 3 cut(s) 230, 670, 1021
TaqI TCGA 6 cut(s) 93, 322, 382, 643, 961, 1112
TasI AATT 6 cut(s) 38, 213, 255, 301, 378, 818
TfiI GAWTC 6 cut(s) 25, 133, 808, 862, 881, 1078
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 810
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 2 cut(s) 314, 827
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 8 cut(s) 55, 90, 267, 444, 455, 609, 743, 1014
TspGWI ACGGA 1 cut(s) 539
TspRI CASTG 1 cut(s) 810
XapI RAATTY 3 cut(s) 213, 378, 818
XspI CTAG 4 cut(s) 35, 123, 440, 1151
ZraI GACGTC 1 cut(s) 1019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.