Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005646

Physical Location & Seq

Genomic Coordinates Reverse (-)

13446829 .. 13448133

Gene Structure 1305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G31590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGGAGACTCAGGCAACGATGCTTTGCAATTGACAAATTGTATTTTCGAAATTATGGGTGGCCAAAACTTGGCATACTTCGATTTTTGGCTATCCGATGTAATCAGGTTAGCTGCTGCTACTCCCTACTTCTCATCTTCAAGAACTGCAGCCTTCCAGCCTTACACTCATCCTACTACTCAAAGTGGTATTGGCAGACTTCAATCCTCTGTTGCTGCGCCCACACCAGGAGTCAGACGGGTTTATGAAACAGGAGAATCATCAAGACGTGTTGAGGATAGGGATTCCAACAATAACCTGCACCTTGGCGACTCATCCAAACGCAAAAACATGATAATCCTACAACGTGAAAAGGATTCAGAACAGAACAAGCAACAAGAAACATATCTAAACATGGGAGGTATTCTGAAACCTCCTAAAAAAACGGTTTCCCGGCGAGGGAGTTCCGACGGTGATTTTTCCGGTGAGGGAGTTCCGGCGGTGGTTTCCGGCGAGGGAGTTCCGGCGGTGGTTTCCGGCGAGGGAGTTCCAGCGGTGATTTTTCCGGTGAGGGAGTTCTGGCGGTGGTTTCCGGCGAGGGAGTTCCGGCGGTGGTTTCCGGCGAGGGAGTTCCGGCGGTGGTTTCCGGCGGTAATTTTCCGGCGAGTGAGTTCCAGCGGTGGTGGCAAAGGTTCCGGTGGTGGTGGTGGTGGTGGTTCTGGGCTGGGATGGTGGTGTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

240

Amino Acids

26.3

Weight (kDa)

9.54

Isoelectric Point (pI)

74.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36960 AT1G43680 AT1G48095 AT2G02103 AT2G13450 AT2G13500 AT2G13510 AT2G16676 AT2G17905 AT2G17920 AT2G31590 AT2G41590 AT3G24070 AT3G31430 AT3G42140 AT3G47920 AT3G57587 AT4G02000 AT4G04730 AT5G18636 AT5G25200 AT5G25600 AT5G35737 AT5G36225 AT5G36228 AT5G40595 AT5G51195
rosa_multiflora	Rmu_sc0003512.1_g000014

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	306
AccB7I	CCANNNNNTGG	1 cut(s)	70
AciI	CCGC	8 cut(s)	479, 506, 533, 562, 589, 616, 629, 657
AcoI	YGGCCR	1 cut(s)	61
AfiI	CCNNNNNNNGG	3 cut(s)	70, 227, 438
AflIII	ACRYGT	1 cut(s)	268
AgsI	TTSAA	2 cut(s)	141, 203
AjiI	CACGTC	1 cut(s)	269
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	4 cut(s)	113, 116, 149, 215
AspLEI	GCGC	1 cut(s)	220
AsuC2I	CCSGG	1 cut(s)	433
AsuHPI	GGTGA	4 cut(s)	464, 476, 547, 559
AsuII	TTCGAA	1 cut(s)	48
BalI	TGGCCA	1 cut(s)	63
BbvI	GCAGC	4 cut(s)	100, 103, 161, 202
BccI	CCATC	1 cut(s)	702
BciT130I	CCWGG	1 cut(s)	228
BcnI	CCSGG	1 cut(s)	433
BfmI	CTRYAG	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	306
BisI	GCNGC	4 cut(s)	114, 117, 150, 216
BlsI	GCNGC	4 cut(s)	115, 118, 151, 217
Bme1390I	CCNGG	2 cut(s)	228, 433
BmgBI	CACGTC	1 cut(s)	269
BmiI	GGNNCC	1 cut(s)	673
BmrFI	CCNGG	2 cut(s)	228, 433
BmsI	GCATC	1 cut(s)	10
Bpu14I	TTCGAA	1 cut(s)	48
BpuMI	CCSGG	1 cut(s)	433
BsaJI	CCNNGG	1 cut(s)	304
BsaWI	WCCGGW	3 cut(s)	461, 544, 674
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 227, 438
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	3 cut(s)	169, 314, 713
BseLI	CCNNNNNNNGG	3 cut(s)	70, 227, 438
BseMII	CTCAG	1 cut(s)	24
BseXI	GCAGC	4 cut(s)	100, 103, 161, 202
BseYI	CCCAGC	1 cut(s)	703
BsgI	GTGCAG	1 cut(s)	284
BshFI	GGCC	1 cut(s)	63
BslI	CCNNNNNNNGG	3 cut(s)	70, 227, 438
BsnI	GGCC	1 cut(s)	63
Bsp119I	TTCGAA	1 cut(s)	48
BspACI	CCGC	8 cut(s)	479, 506, 533, 562, 589, 616, 629, 657
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	673
BspMAI	CTGCAG	1 cut(s)	151
BspMI	ACCTGC	1 cut(s)	306
BspT104I	TTCGAA	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	304
BssT1I	CCWWGG	1 cut(s)	304
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	427, 452
BstBI	TTCGAA	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	10
BstF5I	GGATG	3 cut(s)	169, 314, 713
BstHHI	GCGC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	1 cut(s)	663
BstNI	CCWGG	1 cut(s)	228
BstSCI	CCNGG	2 cut(s)	226, 431
BstSFI	CTRYAG	1 cut(s)	147
BstV1I	GCAGC	4 cut(s)	100, 103, 161, 202
BsuRI	GGCC	1 cut(s)	63
BtrI	CACGTC	1 cut(s)	269
BtsCI	GGATG	3 cut(s)	169, 314, 713
BveI	ACCTGC	1 cut(s)	306
CfoI	GCGC	1 cut(s)	220
CviAII	CATG	2 cut(s)	331, 394
CviJI	RGCY	6 cut(s)	63, 91, 113, 152, 160, 703
CviKI_1	RGCY	6 cut(s)	63, 91, 113, 152, 160, 703
DdeI	CTNAG	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	304
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	2 cut(s)	334, 397
FaiI	YATR	6 cut(s)	56, 76, 246, 332, 385, 395
FatI	CATG	2 cut(s)	330, 393
Fnu4HI	GCNGC	4 cut(s)	114, 117, 150, 216
FokI	GGATG	2 cut(s)	156, 301
Fsp4HI	GCNGC	4 cut(s)	114, 117, 150, 216
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	4 cut(s)	114, 117, 150, 216
GsaI	CCCAGC	1 cut(s)	707
HaeIII	GGCC	1 cut(s)	63
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	2 cut(s)	334, 397
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HinfI	GANTC	6 cut(s)	8, 231, 257, 284, 311, 356
HphI	GGTGA	4 cut(s)	464, 476, 547, 559
Hpy188I	TCNGA	5 cut(s)	97, 236, 361, 408, 448
Hpy188III	TCNNGA	2 cut(s)	141, 264
Hpy99I	CGWCG	1 cut(s)	452
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	2 cut(s)	427, 452
HpyCH4IV	ACGT	2 cut(s)	268, 346
HpyCH4V	TGCA	3 cut(s)	28, 149, 301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	663
HpyF3I	CTNAG	1 cut(s)	10
HpySE526I	ACGT	2 cut(s)	268, 346
Hsp92II	CATG	2 cut(s)	334, 397
HspAI	GCGC	1 cut(s)	218
Lsp1109I	GCAGC	4 cut(s)	100, 103, 161, 202
LweI	GCATC	1 cut(s)	10
MaeII	ACGT	2 cut(s)	268, 346
MboII	GAAGA	1 cut(s)	129
MfeI	CAATTG	1 cut(s)	29
MlsI	TGGCCA	1 cut(s)	63
MluCI	AATT	4 cut(s)	29, 37, 51, 633
MluNI	TGGCCA	1 cut(s)	63
MlyI	GAGTC	3 cut(s)	2, 240, 305
MmeI	TCCRAC	2 cut(s)	312, 471
Mox20I	TGGCCA	1 cut(s)	63
MscI	TGGCCA	1 cut(s)	63
Msp20I	TGGCCA	1 cut(s)	63
MspA1I	CMGCKG	2 cut(s)	533, 657
MspR9I	CCNGG	2 cut(s)	228, 433
MunI	CAATTG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	1 cut(s)	663
NciI	CCSGG	1 cut(s)	433
NlaIII	CATG	2 cut(s)	334, 397
NlaIV	GGNNCC	1 cut(s)	673
NspV	TTCGAA	1 cut(s)	48
PfeI	GAWTC	3 cut(s)	257, 284, 356
PflMI	CCANNNNNTGG	1 cut(s)	70
PkrI	GCNGC	4 cut(s)	115, 118, 151, 217
PleI	GAGTC	3 cut(s)	2, 239, 305
PpsI	GAGTC	3 cut(s)	2, 239, 305
Psp6I	CCWGG	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	703
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	673
PstI	CTGCAG	1 cut(s)	151
SatI	GCNGC	4 cut(s)	114, 117, 150, 216
SchI	GAGTC	3 cut(s)	2, 240, 305
ScrFI	CCNGG	2 cut(s)	228, 433
SetI	ASST	9 cut(s)	110, 115, 271, 300, 306, 349, 403, 415, 673
SfaNI	GCATC	1 cut(s)	10
SfcI	CTRYAG	1 cut(s)	147
SfuI	TTCGAA	1 cut(s)	48
Sse9I	AATT	4 cut(s)	29, 37, 51, 633
SsiI	CCGC	8 cut(s)	479, 506, 533, 562, 589, 616, 629, 657
StyD4I	CCNGG	2 cut(s)	226, 431
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	2 cut(s)	427, 452
TaiI	ACGT	2 cut(s)	271, 349
TaqI	TCGA	2 cut(s)	48, 81
TasI	AATT	4 cut(s)	29, 37, 51, 633
TfiI	GAWTC	3 cut(s)	257, 284, 356
TseI	GCWGC	4 cut(s)	113, 116, 149, 215
TspDTI	ATGAA	1 cut(s)	261
Van91I	CCANNNNNTGG	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.