Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005646

Physical Location & Seq

Genomic Coordinates Forward (+)

17760142 .. 17761998

Gene Structure 1857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G48095.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAGTGATTTTGAGAATATAGTATTACCCAGTTCTTGCGACTCACAAGTCACAGCTTGGCCTGTTCTTGAACTGGATTTTAATCAAGACACTTCCACTTATGTTGCCTTTATCCGTGTTAAGATCAGACTTGTATTCACTGACCGCCTTCGGTTTTTTCGGAGAGTTCGTTTTGAATCTAGAGAAGGTGCTATGATTGGGTTTGAGTATGAGAAGCTTCGAAGGATATGTACTAATTGTTGTCGTATCACTCATCACGTAAACAACTGTCCCTTTCTTAATGCACCTGTGATTCATGATGATGAGGTGGAGGTACTTGATGTACCTGTTTGGGAGGAAGGTGCTGCTTCTAACACTATCACTGATCAAACTCATATGACTAGCTCAGACAGTTCAGACATCTCCTCTGCATCACTGATATCACAGCCTCTTCCTCCAGCATCTTTAGCTTCTCATGAACCTCACTTAGTTGCTGGATCTGAGGCTTCCAGACTTGTTAATCCAAGACCTATACCTCAGAATCACTTTTCTAGCTCTTCTTCTGACTTCAAGGGCAAAGGAAAAGCGAAAATGGAGATTGGTGAATGCTCTAAACGTAAAAAGGATAAGCAAGTTGTTGATGATGCACTTCGCAACGTTAGGCAATGTCGCAAGGATCAGGGGATTAGGATCATGATCTTGCAAATTAATTTAGATATTGAGCTGGCGAGTTTTGTCCGGACAGCTGGGGCAGTTGCCTCCCATAAAATGATGAAGTTGCTAACACCATTCTCCACCGTTGTTTTGCGTAGAAGCAAATATAGCATCCTGGATGATCTTGAAGGATACATTACCAGTGGAGTTTATACATACAAGGTAACAATATCTACTAAATTAAAGATTTGTTTTTCTCTCTATTTTCACTTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005227 GO:0005253 GO:0005261 GO:0005267 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006820 GO:0008150 GO:0008324 GO:0008509 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015103 GO:0015267 GO:0015269 GO:0015318 GO:0015672 GO:0015698 GO:0022803 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0022890 GO:0030001 GO:0032991 GO:0034220 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046873 GO:0051082 GO:0051179 GO:0051234 GO:0055085 GO:0061077 GO:0071804 GO:0071805 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

303

Amino Acids

34.26

Weight (kDa)

8.37

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC_4	PF14392	45 - 92	1.6e-22	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36960 AT1G43680 AT1G48095 AT2G02103 AT2G13450 AT2G13500 AT2G13510 AT2G16676 AT2G17905 AT2G17920 AT2G31590 AT2G41590 AT3G24070 AT3G31430 AT3G42140 AT3G47920 AT3G57587 AT4G02000 AT4G04730 AT5G18636 AT5G25200 AT5G25600 AT5G35737 AT5G36225 AT5G36228 AT5G40595 AT5G51195
rosa_multiflora	Rmu_sc0003512.1_g000014

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	47
AccIII	TCCGGA	1 cut(s)	717
AciI	CCGC	1 cut(s)	145
AclI	AACGTT	1 cut(s)	636
AclWI	GGATC	3 cut(s)	484, 663, 677
AfaI	GTAC	3 cut(s)	232, 315, 324
AgsI	TTSAA	4 cut(s)	71, 176, 550, 821
AjnI	CCWGG	1 cut(s)	807
AluBI	AGCT	7 cut(s)	56, 217, 384, 449, 534, 703, 725
AluI	AGCT	7 cut(s)	56, 217, 384, 449, 534, 703, 725
AlwI	GGATC	3 cut(s)	484, 663, 677
Aor13HI	TCCGGA	1 cut(s)	717
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	1 cut(s)	344
AseI	ATTAAT	1 cut(s)	687
AsuHPI	GGTGA	1 cut(s)	593
AsuII	TTCGAA	1 cut(s)	220
BarI	GAAGNNNNNNTAC	2 cut(s)	214, 246
BbvI	GCAGC	1 cut(s)	331
BciT130I	CCWGG	1 cut(s)	809
BciVI	GTATCC	1 cut(s)	818
BclI	TGATCA	1 cut(s)	364
BfaI	CTAG	3 cut(s)	180, 381, 531
BfuI	GTATCC	1 cut(s)	818
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
Bme1390I	CCNGG	1 cut(s)	809
BmrFI	CCNGG	1 cut(s)	809
BmrI	ACTGGG	1 cut(s)	24
BmsI	GCATC	4 cut(s)	419, 449, 613, 813
BmuI	ACTGGG	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	420
Bpu14I	TTCGAA	1 cut(s)	220
BsaAI	YACGTR	1 cut(s)	259
BsaBI	GATNNNNATC	3 cut(s)	81, 668, 674
BsaWI	WCCGGW	1 cut(s)	717
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bse1I	ACTGG	3 cut(s)	30, 78, 834
Bse3DI	GCAATG	1 cut(s)	650
Bse8I	GATNNNNATC	3 cut(s)	81, 668, 674
BseAI	TCCGGA	1 cut(s)	717
BseBI	CCWGG	1 cut(s)	809
BseGI	GGATG	2 cut(s)	804, 817
BseJI	GATNNNNATC	3 cut(s)	81, 668, 674
BseMI	GCAATG	1 cut(s)	650
BseMII	CTCAG	3 cut(s)	399, 471, 530
BseNI	ACTGG	3 cut(s)	30, 78, 834
BseRI	GAGGAG	1 cut(s)	394
BseXI	GCAGC	1 cut(s)	331
BseYI	CCCAGC	1 cut(s)	725
BshFI	GGCC	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	718
BslFI	GGGAC	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	255
BsmI	GAATGC	1 cut(s)	590
BsnI	GGCC	1 cut(s)	61
Bsp119I	TTCGAA	1 cut(s)	220
Bsp13I	TCCGGA	1 cut(s)	717
Bsp143I	GATC	7 cut(s)	123, 364, 476, 655, 669, 675, 814
BspACI	CCGC	1 cut(s)	145
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	3 cut(s)	398, 472, 529
BspEI	TCCGGA	1 cut(s)	717
BspHI	TCATGA	3 cut(s)	295, 454, 672
BspPI	GGATC	3 cut(s)	484, 663, 677
BspQI	GCTCTTC	1 cut(s)	541
BspT104I	TTCGAA	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	650
BsrI	ACTGG	3 cut(s)	30, 78, 834
BssMI	GATC	7 cut(s)	123, 364, 476, 655, 669, 675, 814
Bst2UI	CCWGG	1 cut(s)	809
Bst4CI	ACNGT	3 cut(s)	269, 392, 778
Bst6I	CTCTTC	2 cut(s)	435, 541
BstBAI	YACGTR	1 cut(s)	259
BstBI	TTCGAA	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	705
BstDEI	CTNAG	4 cut(s)	385, 466, 480, 516
BstF5I	GGATG	2 cut(s)	804, 817
BstKTI	GATC	7 cut(s)	126, 367, 479, 658, 672, 678, 817
BstMBI	GATC	7 cut(s)	123, 364, 476, 655, 669, 675, 814
BstMWI	GCNNNNNNNGC	2 cut(s)	446, 801
BstNI	CCWGG	1 cut(s)	809
BstSCI	CCNGG	1 cut(s)	807
BstV1I	GCAGC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
BsuI	GTATCC	1 cut(s)	818
BsuRI	GGCC	1 cut(s)	61
BtsCI	GGATG	2 cut(s)	804, 817
BtsIMutI	CAGTG	4 cut(s)	138, 360, 413, 841
Cac8I	GCNNGC	1 cut(s)	705
CciI	TCATGA	3 cut(s)	295, 454, 672
Csp6I	GTAC	3 cut(s)	231, 314, 323
CspCI	CAANNNNNGTGG	2 cut(s)	85, 120
CviAII	CATG	3 cut(s)	296, 455, 673
CviQI	GTAC	3 cut(s)	231, 314, 323
DdeI	CTNAG	4 cut(s)	385, 466, 480, 516
DpnI	GATC	7 cut(s)	125, 366, 478, 657, 671, 677, 816
DpnII	GATC	7 cut(s)	123, 364, 476, 655, 669, 675, 814
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
Eam1104I	CTCTTC	2 cut(s)	435, 541
EarI	CTCTTC	2 cut(s)	435, 541
Eco32I	GATATC	1 cut(s)	420
EcoRII	CCWGG	1 cut(s)	807
EcoRV	GATATC	1 cut(s)	420
FaeI	CATG	3 cut(s)	299, 458, 676
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	3 cut(s)	295, 454, 672
FauNDI	CATATG	1 cut(s)	375
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	2 cut(s)	791, 824
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	3 cut(s)	180, 381, 531
GluI	GCNGC	1 cut(s)	345
GsaI	CCCAGC	1 cut(s)	729
GsuI	CTGGAG	1 cut(s)	420
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	1 cut(s)	718
Hin1II	CATG	3 cut(s)	299, 458, 676
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	4 cut(s)	41, 176, 292, 520
HpaII	CCGG	1 cut(s)	718
HphI	GGTGA	1 cut(s)	593
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	7 cut(s)	128, 162, 388, 397, 481, 519, 544
Hpy188III	TCNNGA	9 cut(s)	68, 86, 180, 296, 455, 489, 673, 718, 818
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	5 cut(s)	158, 179, 216, 332, 815
HpyCH4III	ACNGT	3 cut(s)	269, 392, 778
HpyCH4IV	ACGT	3 cut(s)	258, 595, 636
HpyCH4V	TGCA	4 cut(s)	284, 410, 626, 682
HpyF10VI	GCNNNNNNNGC	2 cut(s)	446, 801
HpyF3I	CTNAG	4 cut(s)	385, 466, 480, 516
HpySE526I	ACGT	3 cut(s)	258, 595, 636
Hsp92II	CATG	3 cut(s)	299, 458, 676
Kpn2I	TCCGGA	1 cut(s)	717
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	7 cut(s)	123, 364, 476, 655, 669, 675, 814
LguI	GCTCTTC	1 cut(s)	541
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	4 cut(s)	419, 449, 613, 813
MaeI	CTAG	3 cut(s)	180, 381, 531
MaeII	ACGT	3 cut(s)	258, 595, 636
MaeIII	GTNAC	2 cut(s)	49, 856
MalI	GATC	7 cut(s)	125, 366, 478, 657, 671, 677, 816
MboI	GATC	7 cut(s)	123, 364, 476, 655, 669, 675, 814
MboII	GAAGA	3 cut(s)	422, 528, 531
MflI	RGATCY	1 cut(s)	476
MluCI	AATT	4 cut(s)	235, 684, 688, 872
MlyI	GAGTC	1 cut(s)	35
MroI	TCCGGA	1 cut(s)	717
MseI	TTAA	7 cut(s)	81, 120, 279, 498, 687, 875, 910
MslI	CAYNNNNRTG	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	725
MspI	CCGG	1 cut(s)	718
MspR9I	CCNGG	1 cut(s)	809
Mva1269I	GAATGC	1 cut(s)	590
MvaI	CCWGG	1 cut(s)	809
MwoI	GCNNNNNNNGC	2 cut(s)	446, 801
NdeI	CATATG	1 cut(s)	375
NdeII	GATC	7 cut(s)	123, 364, 476, 655, 669, 675, 814
NlaIII	CATG	3 cut(s)	299, 458, 676
NmuCI	GTSAC	1 cut(s)	49
NspV	TTCGAA	1 cut(s)	220
PagI	TCATGA	3 cut(s)	295, 454, 672
PciSI	GCTCTTC	1 cut(s)	541
PcsI	WCGNNNNNNNCGW	1 cut(s)	166
PctI	GAATGC	1 cut(s)	590
PfeI	GAWTC	3 cut(s)	176, 292, 520
PfoI	TCCNGGA	1 cut(s)	807
PkrI	GCNGC	1 cut(s)	346
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
Ppu21I	YACGTR	1 cut(s)	259
PshBI	ATTAAT	1 cut(s)	687
Psp1406I	AACGTT	1 cut(s)	636
Psp6I	CCWGG	1 cut(s)	807
PspFI	CCCAGC	1 cut(s)	725
PspGI	CCWGG	1 cut(s)	807
PsuI	RGATCY	1 cut(s)	476
PvuII	CAGCTG	1 cut(s)	725
RsaI	GTAC	3 cut(s)	232, 315, 324
RsaNI	GTAC	3 cut(s)	231, 314, 323
RseI	CAYNNNNRTG	1 cut(s)	300
SapI	GCTCTTC	1 cut(s)	541
SaqAI	TTAA	7 cut(s)	81, 120, 279, 498, 687, 875, 910
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	7 cut(s)	123, 364, 476, 655, 669, 675, 814
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	809
SfaNI	GCATC	4 cut(s)	419, 449, 613, 813
SfuI	TTCGAA	1 cut(s)	220
SmiMI	CAYNNNNRTG	1 cut(s)	300
Sse9I	AATT	4 cut(s)	235, 684, 688, 872
SsiI	CCGC	1 cut(s)	145
SspMI	CTAG	3 cut(s)	180, 381, 531
StyD4I	CCNGG	1 cut(s)	807
TaaI	ACNGT	3 cut(s)	269, 392, 778
TaiI	ACGT	3 cut(s)	261, 598, 639
TaqI	TCGA	1 cut(s)	220
TasI	AATT	4 cut(s)	235, 684, 688, 872
TatI	WGTACW	1 cut(s)	230
TfiI	GAWTC	3 cut(s)	176, 292, 520
Tru1I	TTAA	7 cut(s)	81, 120, 279, 498, 687, 875, 910
Tru9I	TTAA	7 cut(s)	81, 120, 279, 498, 687, 875, 910
TscAI	CASTG	4 cut(s)	145, 367, 420, 841
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	3 cut(s)	284, 471, 767
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	4 cut(s)	145, 367, 420, 841
VspI	ATTAAT	1 cut(s)	687
XbaI	TCTAGA	1 cut(s)	179
XspI	CTAG	3 cut(s)	180, 381, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.