AT3G24070

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005646
Physical Location & Seq
Forward (+)
8693061 .. 8694770
1710 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G24070.1

Sequence Viewer

Length: 789 bp
ATGTGGTTGAAGATTCGTGGGATTCCGATTCAGTATCTTTGTGATGGGACGGTTCGTGAGATTGCTTCGTCTATGGGTGAGGTAATGGAAGTTGAATTAGATGATGGAATGGTTGATTTGAGTTCTGTGCGTGCTCGTGTGAATGTTTGTGTGGATACACGTTTGTGTTTTAAGAAAGTGGCGAGGTTTGATTCTGGAGAGGTTAAGATTGTGAGTTTTAGGTATGAGGATATTGGTATGAGTAAAGCGAGGTTTAAGTTTTGTTTTAATTGTGGGGATATGAATCATTTGGCTAGGAATTGTTTGATCCCTTGGGTTGATGTTCCTGATCCTTATGAACGTTCTCTTTCACCACCGCCTCATGAGTCTAACTCTGATGGTTCTGCTGAGGGCAACTGTGGTGATGGTGGAACTTCTTCTGGTACTTTGGAGCTGCTCGAATTGGTGGATGCGGTTCAGGACTTTCCTGTTGGGGATGGTGAGCAGCTCGAATTGGCGGGTGTGGTTCAGGACTTGCCTGTTGGGGATGGTGAGCAGCAGCAGCAAGGTCTTGATGGTGTTGAGGAAGCTAATGCTACGCAGGTGGATTCTGAAATGGTTGGAATTTCATCTGAGGGGTCTAAAAGGAAGTTTGATGCGGTGGAGCAGGGTGATGAAAATCCGGAAAAGCGGCTTAGAGGAATCACTGATGCAACTGAGGGAGGAAGCACTGACGCAACTCAGGGAGGAAGCACTGATGCAACTGAGGAGGGTTTAGGGGTTAGCCTTAAGCCACTTCAAGGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283

Protein Analysis

262

Amino Acids

28.16

Weight (kDa)

4.3

Isoelectric Point (pI)

31.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 571
Acc36I ACCTGC 1 cut(s) 571
AccIII TCCGGA 1 cut(s) 661
AciI CCGC 5 cut(s) 356, 452, 497, 638, 670
AclI AACGTT 1 cut(s) 340
AclWI GGATC 2 cut(s) 301, 323
AcsI RAATTY 1 cut(s) 603
AfaI GTAC 1 cut(s) 424
AfiI CCNNNNNNNGG 1 cut(s) 779
AflII CTTAAG 1 cut(s) 767
AflIII ACRYGT 1 cut(s) 158
AgsI TTSAA 3 cut(s) 10, 95, 779
AleI CACNNNNGTG 1 cut(s) 163
AluBI AGCT 3 cut(s) 433, 487, 569
AluI AGCT 3 cut(s) 433, 487, 569
Alw21I GWGCWC 1 cut(s) 136
AlwI GGATC 2 cut(s) 301, 323
Aor13HI TCCGGA 1 cut(s) 661
ApeKI GCWGC 5 cut(s) 433, 484, 535, 538, 541
ApoI RAATTY 1 cut(s) 603
Asp700I GAANNNNTTC 1 cut(s) 415
AsuHPI GGTGA 6 cut(s) 89, 342, 413, 491, 542, 662
BauI CACGAG 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 136
BbvCI CCTCAGC 1 cut(s) 387
BbvI GCAGC 5 cut(s) 420, 496, 547, 550, 553
BccI CCATC 7 cut(s) 38, 98, 371, 398, 470, 521, 548
BciVI GTATCC 1 cut(s) 148
BfaI CTAG 1 cut(s) 294
BfrI CTTAAG 1 cut(s) 767
BfuAI ACCTGC 1 cut(s) 571
BfuI GTATCC 1 cut(s) 148
BisI GCNGC 6 cut(s) 434, 485, 536, 539, 542, 671
BlsI GCNGC 6 cut(s) 435, 486, 537, 540, 543, 672
BmsI GCATC 4 cut(s) 439, 625, 679, 727
BplI GAGNNNNNCTC 2 cut(s) 356, 388
BpmI CTGGAG 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 387
BsaBI GATNNNNATC 2 cut(s) 282, 657
BsaJI CCNNGG 1 cut(s) 311
BsaWI WCCGGW 1 cut(s) 661
Bsc4I CCNNNNNNNGG 1 cut(s) 779
Bse8I GATNNNNATC 2 cut(s) 282, 657
BseAI TCCGGA 1 cut(s) 661
BseDI CCNNGG 1 cut(s) 311
BseGI GGATG 3 cut(s) 454, 481, 532
BseJI GATNNNNATC 2 cut(s) 282, 657
BseLI CCNNNNNNNGG 1 cut(s) 779
BseMII CTCAG 5 cut(s) 378, 603, 687, 734, 735
BseRI GAGGAG 1 cut(s) 761
BseXI GCAGC 5 cut(s) 420, 496, 547, 550, 553
BsiHKAI GWGCWC 1 cut(s) 136
BsiSI CCGG 1 cut(s) 662
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 779
BsmFI GGGAC 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 136
Bsp13I TCCGGA 1 cut(s) 661
Bsp143I GATC 2 cut(s) 306, 328
BspACI CCGC 5 cut(s) 356, 452, 497, 638, 670
BspCNI CTCAG 5 cut(s) 379, 604, 688, 733, 736
BspEI TCCGGA 1 cut(s) 661
BspHI TCATGA 1 cut(s) 361
BspMI ACCTGC 1 cut(s) 571
BspPI GGATC 2 cut(s) 301, 323
BspTI CTTAAG 1 cut(s) 767
BssECI CCNNGG 1 cut(s) 311
BssMI GATC 2 cut(s) 306, 328
BssSI CACGAG 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 311
Bst2BI CACGAG 1 cut(s) 135
Bst4CI ACNGT 2 cut(s) 52, 398
BstAFI CTTAAG 1 cut(s) 767
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 6 cut(s) 387, 612, 674, 696, 720, 744
BstF5I GGATG 3 cut(s) 454, 481, 532
BstKTI GATC 2 cut(s) 309, 331
BstMBI GATC 2 cut(s) 306, 328
BstMWI GCNNNNNNNGC 1 cut(s) 541
BstV1I GCAGC 5 cut(s) 420, 496, 547, 550, 553
BsuI GTATCC 1 cut(s) 148
BtsCI GGATG 3 cut(s) 454, 481, 532
BtsIMutI CAGTG 3 cut(s) 684, 708, 732
BveI ACCTGC 1 cut(s) 571
Cac8I GCNNGC 1 cut(s) 132
CciI TCATGA 1 cut(s) 361
CseI GACGC 1 cut(s) 722
Csp6I GTAC 1 cut(s) 423
CviAII CATG 1 cut(s) 362
CviJI RGCY 7 cut(s) 293, 433, 487, 569, 673, 765, 772
CviKI_1 RGCY 7 cut(s) 293, 433, 487, 569, 673, 765, 772
CviQI GTAC 1 cut(s) 423
DdeI CTNAG 6 cut(s) 387, 612, 674, 696, 720, 744
DpnI GATC 2 cut(s) 308, 330
DpnII GATC 2 cut(s) 306, 328
Eco130I CCWWGG 1 cut(s) 311
EcoT14I CCWWGG 1 cut(s) 311
ErhI CCWWGG 1 cut(s) 311
FaeI CATG 1 cut(s) 365
FaiI YATR 6 cut(s) 74, 225, 239, 281, 336, 363
FaqI GGGAC 1 cut(s) 61
FatI CATG 1 cut(s) 361
FauI CCCGC 1 cut(s) 490
Fnu4HI GCNGC 6 cut(s) 434, 485, 536, 539, 542, 671
FokI GGATG 3 cut(s) 461, 488, 539
Fsp4HI GCNGC 6 cut(s) 434, 485, 536, 539, 542, 671
FspBI CTAG 1 cut(s) 294
GluI GCNGC 6 cut(s) 434, 485, 536, 539, 542, 671
GsuI CTGGAG 1 cut(s) 216
HapII CCGG 1 cut(s) 662
HgaI GACGC 1 cut(s) 722
Hin1II CATG 1 cut(s) 365
HinfI GANTC 8 cut(s) 13, 22, 28, 191, 283, 365, 587, 681
HpaII CCGG 1 cut(s) 662
HphI GGTGA 6 cut(s) 89, 342, 413, 491, 542, 662
Hpy188I TCNGA 4 cut(s) 27, 376, 592, 613
Hpy188III TCNNGA 8 cut(s) 56, 195, 326, 362, 458, 509, 551, 662
HpyCH4III ACNGT 2 cut(s) 52, 398
HpyCH4IV ACGT 2 cut(s) 160, 340
HpyCH4V TGCA 2 cut(s) 692, 740
HpyF10VI GCNNNNNNNGC 1 cut(s) 541
HpyF3I CTNAG 6 cut(s) 387, 612, 674, 696, 720, 744
HpySE526I ACGT 2 cut(s) 160, 340
Hsp92II CATG 1 cut(s) 365
Kpn2I TCCGGA 1 cut(s) 661
Kzo9I GATC 2 cut(s) 306, 328
LmnI GCTCC 2 cut(s) 430, 643
Lsp1109I GCAGC 5 cut(s) 420, 496, 547, 550, 553
LweI GCATC 4 cut(s) 439, 625, 679, 727
MaeI CTAG 1 cut(s) 294
MaeII ACGT 2 cut(s) 160, 340
MalI GATC 2 cut(s) 308, 330
MboI GATC 2 cut(s) 306, 328
MboII GAAGA 2 cut(s) 22, 408
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 6 cut(s) 95, 268, 298, 440, 491, 603
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 1 cut(s) 580
MroI TCCGGA 1 cut(s) 661
MroXI GAANNNNTTC 1 cut(s) 415
MseI TTAA 5 cut(s) 171, 204, 255, 267, 768
MslI CAYNNNNRTG 1 cut(s) 163
MspCI CTTAAG 1 cut(s) 767
MspI CCGG 1 cut(s) 662
MwoI GCNNNNNNNGC 1 cut(s) 541
NdeII GATC 2 cut(s) 306, 328
NlaIII CATG 1 cut(s) 365
OliI CACNNNNGTG 1 cut(s) 163
PagI TCATGA 1 cut(s) 361
PaqCI CACCTGC 1 cut(s) 571
PdmI GAANNNNTTC 1 cut(s) 415
PfeI GAWTC 7 cut(s) 13, 22, 28, 191, 283, 587, 681
PkrI GCNGC 6 cut(s) 435, 486, 537, 540, 543, 672
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
Psp1406I AACGTT 1 cut(s) 340
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
RseI CAYNNNNRTG 1 cut(s) 163
SaqAI TTAA 5 cut(s) 171, 204, 255, 267, 768
SatI GCNGC 6 cut(s) 434, 485, 536, 539, 542, 671
Sau3AI GATC 2 cut(s) 306, 328
SchI GAGTC 1 cut(s) 374
SduI GDGCHC 1 cut(s) 136
SfaNI GCATC 4 cut(s) 439, 625, 679, 727
SmiMI CAYNNNNRTG 1 cut(s) 163
SmlI CTYRAG 1 cut(s) 767
SmoI CTYRAG 1 cut(s) 767
Sse9I AATT 6 cut(s) 95, 268, 298, 440, 491, 603
SsiI CCGC 5 cut(s) 356, 452, 497, 638, 670
SspMI CTAG 1 cut(s) 294
StyI CCWWGG 1 cut(s) 311
TaaI ACNGT 2 cut(s) 52, 398
TaiI ACGT 2 cut(s) 163, 343
TaqI TCGA 2 cut(s) 438, 489
TasI AATT 6 cut(s) 95, 268, 298, 440, 491, 603
TauI GCSGC 1 cut(s) 673
TfiI GAWTC 7 cut(s) 13, 22, 28, 191, 283, 587, 681
Tru1I TTAA 5 cut(s) 171, 204, 255, 267, 768
Tru9I TTAA 5 cut(s) 171, 204, 255, 267, 768
TscAI CASTG 3 cut(s) 691, 715, 739
TseI GCWGC 5 cut(s) 433, 484, 535, 538, 541
TspDTI ATGAA 4 cut(s) 296, 351, 597, 669
TspRI CASTG 3 cut(s) 691, 715, 739
Vha464I CTTAAG 1 cut(s) 767
XapI RAATTY 1 cut(s) 603
XmnI GAANNNNTTC 1 cut(s) 415
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.