AT2G16676

At4g02000-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005646
Physical Location & Seq
Reverse (-)
7230346 .. 7232223
1878 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G16676.1

Sequence Viewer

Length: 657 bp
ATGCGTGGGATTCCTCTCCTCTATGTTTGTGAAGCCACAGTGACAGAGATAGCTCTTGGTTTAGGGCAAATTATATCATTGGATTTTCATGATGCTACTACAACCCAAATAGCTTTTATTAGAGTGAGAATCCGATTTGAGATCACTGATCGTATAAGGTTCTTCCAAAGAATTACCTTTGATTCTGGTGAGACTGCGCTGATAAGGTTTCAATATGAAAGACTAAGGCGAATTTGCAGTAGCTGTTTCAGGCTGACTCATCATAGGAATTACTGCCCTTATCGACAACCTGAGCCTCGTTCTATCATTCGTGGTCCTACCAACAATCTCACTAGGTCTAGAAGAGAAGGAGTGTGTACCCGGGATGAATATCATCGTTCTTCCCTGAACTCCCAATCACAGATGTCTGAGAACGCCTTTCCAGCACCTATTGAACCTCCTCCAAGAGTGGCAGCTCCTCCTTTGAATCCTGATGAATTTAGGGCTGCTTATTTTCCAGAAGGCAGAGCAGGTTCTTTACCAAATATAGGAACATTAAATCTTAATCCTCCATCTCGCAGGCAAGAGGCGTCAAGAAACTCTAATGTACAACCGTTTACGGGTCCTGCATTTGGTGCAAATGTTCCTCGAGTGGTTGAAGTAGGTGAATGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

24.75

Weight (kDa)

9.48

Isoelectric Point (pI)

63.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 47 - 94 5.9e-22 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 500
AcsI RAATTY 2 cut(s) 231, 476
AcyI GRCGYC 1 cut(s) 569
AfaI GTAC 2 cut(s) 358, 588
AfiI CCNNNNNNNGG 3 cut(s) 527, 599, 611
AgsI TTSAA 4 cut(s) 212, 434, 466, 638
AluBI AGCT 4 cut(s) 53, 113, 243, 455
AluI AGCT 4 cut(s) 53, 113, 243, 455
Alw26I GTCTC 1 cut(s) 185
AlwNI CAGNNNCTG 1 cut(s) 243
Ama87I CYCGRG 2 cut(s) 360, 627
ApeKI GCWGC 2 cut(s) 452, 485
ApoI RAATTY 2 cut(s) 231, 476
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 2 cut(s) 314, 602
AsuC2I CCSGG 2 cut(s) 361, 362
AsuHPI GGTGA 2 cut(s) 200, 656
AvaI CYCGRG 2 cut(s) 360, 627
AvaII GGWCC 2 cut(s) 314, 602
BbvI GCAGC 2 cut(s) 464, 472
BccI CCATC 1 cut(s) 559
BcnI CCSGG 2 cut(s) 361, 362
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 2 cut(s) 333, 339
BfuAI ACCTGC 1 cut(s) 500
BisI GCNGC 2 cut(s) 453, 486
BlsI GCNGC 2 cut(s) 454, 487
Bme1390I CCNGG 2 cut(s) 361, 362
Bme18I GGWCC 2 cut(s) 314, 602
BmeT110I CYCGRG 2 cut(s) 360, 627
BmgT120I GGNCC 2 cut(s) 314, 602
BmiI GGNNCC 1 cut(s) 603
BmrFI CCNGG 2 cut(s) 361, 362
BmsI GCATC 1 cut(s) 82
Bpu10I CCTNAGC 1 cut(s) 291
BpuMI CCSGG 2 cut(s) 361, 362
BsaBI GATNNNNATC 1 cut(s) 369
BsaHI GRCGYC 1 cut(s) 569
BsaJI CCNNGG 1 cut(s) 360
Bsc4I CCNNNNNNNGG 3 cut(s) 527, 599, 611
Bse8I GATNNNNATC 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 360
BseGI GGATG 1 cut(s) 370
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 3 cut(s) 527, 599, 611
BseMII CTCAG 2 cut(s) 282, 399
BseRI GAGGAG 3 cut(s) 8, 429, 447
BseXI GCAGC 2 cut(s) 464, 472
BsiHKCI CYCGRG 2 cut(s) 360, 627
BsiSI CCGG 1 cut(s) 361
BslI CCNNNNNNNGG 3 cut(s) 527, 599, 611
BsmAI GTCTC 1 cut(s) 185
BsoBI CYCGRG 2 cut(s) 360, 627
Bsp1407I TGTACA 1 cut(s) 586
Bsp143I GATC 2 cut(s) 141, 148
BspCNI CTCAG 2 cut(s) 283, 400
BspHI TCATGA 2 cut(s) 88, 653
BspLI GGNNCC 1 cut(s) 603
BspMI ACCTGC 1 cut(s) 500
BsrGI TGTACA 1 cut(s) 586
BssECI CCNNGG 1 cut(s) 360
BssMI GATC 2 cut(s) 141, 148
BssNI GRCGYC 1 cut(s) 569
Bst4CI ACNGT 2 cut(s) 40, 594
Bst6I CTCTTC 1 cut(s) 337
BstACI GRCGYC 1 cut(s) 569
BstAPI GCANNNNNTGC 1 cut(s) 614
BstAUI TGTACA 1 cut(s) 586
BstC8I GCNNGC 1 cut(s) 560
BstDEI CTNAG 3 cut(s) 224, 291, 408
BstF5I GGATG 1 cut(s) 370
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 2 cut(s) 144, 151
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 2 cut(s) 141, 148
BstMWI GCNNNNNNNGC 2 cut(s) 422, 614
BstSCI CCNGG 2 cut(s) 359, 360
BstV1I GCAGC 2 cut(s) 464, 472
BtsCI GGATG 1 cut(s) 370
BtsIMutI CAGTG 2 cut(s) 45, 144
BveI ACCTGC 1 cut(s) 500
Cac8I GCNNGC 1 cut(s) 560
CaiI CAGNNNCTG 1 cut(s) 243
CciI TCATGA 2 cut(s) 88, 653
CfoI GCGC 1 cut(s) 199
Cfr13I GGNCC 2 cut(s) 314, 602
Cfr9I CCCGGG 1 cut(s) 360
CseI GACGC 1 cut(s) 558
Csp6I GTAC 2 cut(s) 357, 587
CviAII CATG 2 cut(s) 89, 654
CviJI RGCY 8 cut(s) 35, 53, 113, 243, 253, 295, 455, 485
CviKI_1 RGCY 8 cut(s) 35, 53, 113, 243, 253, 295, 455, 485
CviQI GTAC 2 cut(s) 357, 587
DdeI CTNAG 3 cut(s) 224, 291, 408
DpnI GATC 2 cut(s) 143, 150
DpnII GATC 2 cut(s) 141, 148
Eam1104I CTCTTC 1 cut(s) 337
EarI CTCTTC 1 cut(s) 337
Eco47I GGWCC 2 cut(s) 314, 602
Eco88I CYCGRG 2 cut(s) 360, 627
EcoO109I RGGNCCY 1 cut(s) 602
FaeI CATG 2 cut(s) 92, 657
FaiI YATR 8 cut(s) 24, 74, 90, 155, 216, 264, 527, 655
FatI CATG 2 cut(s) 88, 653
Fnu4HI GCNGC 2 cut(s) 453, 486
FokI GGATG 1 cut(s) 377
Fsp4HI GCNGC 2 cut(s) 453, 486
FspBI CTAG 2 cut(s) 333, 339
GlaI GCGC 1 cut(s) 198
GluI GCNGC 2 cut(s) 453, 486
HapII CCGG 1 cut(s) 361
HgaI GACGC 1 cut(s) 558
HhaI GCGC 1 cut(s) 199
Hin1I GRCGYC 1 cut(s) 569
Hin1II CATG 2 cut(s) 92, 657
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HinfI GANTC 5 cut(s) 10, 129, 182, 256, 466
HpaII CCGG 1 cut(s) 361
HphI GGTGA 2 cut(s) 200, 656
Hpy166II GTNNAC 2 cut(s) 357, 597
Hpy188I TCNGA 2 cut(s) 134, 409
Hpy188III TCNNGA 6 cut(s) 89, 339, 470, 497, 573, 654
Hpy8I GTNNAC 2 cut(s) 357, 597
HpyAV CCTTC 2 cut(s) 341, 494
HpyCH4III ACNGT 2 cut(s) 40, 594
HpyCH4V TGCA 3 cut(s) 237, 608, 617
HpyF10VI GCNNNNNNNGC 2 cut(s) 422, 614
HpyF3I CTNAG 3 cut(s) 224, 291, 408
Hsp92I GRCGYC 1 cut(s) 569
Hsp92II CATG 2 cut(s) 92, 657
HspAI GCGC 1 cut(s) 197
Kzo9I GATC 2 cut(s) 141, 148
LmnI GCTCC 1 cut(s) 460
Lsp1109I GCAGC 2 cut(s) 464, 472
LweI GCATC 1 cut(s) 82
MaeI CTAG 2 cut(s) 333, 339
MaeIII GTNAC 1 cut(s) 40
MalI GATC 2 cut(s) 143, 150
MboI GATC 2 cut(s) 141, 148
MboII GAAGA 3 cut(s) 154, 354, 372
MluCI AATT 5 cut(s) 69, 171, 231, 268, 476
MlyI GAGTC 1 cut(s) 250
MnlI CCTC 9 cut(s) 24, 29, 306, 447, 450, 468, 558, 559, 636
MseI TTAA 2 cut(s) 536, 543
MspI CCGG 1 cut(s) 361
MspR9I CCNGG 2 cut(s) 361, 362
MwoI GCNNNNNNNGC 2 cut(s) 422, 614
NciI CCSGG 2 cut(s) 361, 362
NdeII GATC 2 cut(s) 141, 148
NlaIII CATG 2 cut(s) 92, 657
NlaIV GGNNCC 1 cut(s) 603
NmuCI GTSAC 1 cut(s) 40
PaeR7I CTCGAG 1 cut(s) 627
PagI TCATGA 2 cut(s) 88, 653
PfeI GAWTC 4 cut(s) 10, 129, 182, 466
PkrI GCNGC 2 cut(s) 454, 487
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PpuMI RGGWCCY 1 cut(s) 602
Psp5II RGGWCCY 1 cut(s) 602
PspN4I GGNNCC 1 cut(s) 603
PspPI GGNCC 2 cut(s) 314, 602
PspPPI RGGWCCY 1 cut(s) 602
PspXI VCTCGAGB 1 cut(s) 627
PstNI CAGNNNCTG 1 cut(s) 243
RsaI GTAC 2 cut(s) 358, 588
RsaNI GTAC 2 cut(s) 357, 587
SaqAI TTAA 2 cut(s) 536, 543
SatI GCNGC 2 cut(s) 453, 486
Sau3AI GATC 2 cut(s) 141, 148
Sau96I GGNCC 2 cut(s) 314, 602
SchI GAGTC 1 cut(s) 250
ScrFI CCNGG 2 cut(s) 361, 362
SfaNI GCATC 1 cut(s) 82
Sfr274I CTCGAG 1 cut(s) 627
SinI GGWCC 2 cut(s) 314, 602
SlaI CTCGAG 1 cut(s) 627
SmaI CCCGGG 1 cut(s) 362
SmlI CTYRAG 1 cut(s) 627
SmoI CTYRAG 1 cut(s) 627
Sse9I AATT 5 cut(s) 69, 171, 231, 268, 476
SspMI CTAG 2 cut(s) 333, 339
StyD4I CCNGG 2 cut(s) 359, 360
TaaI ACNGT 2 cut(s) 40, 594
TaqI TCGA 2 cut(s) 283, 628
TasI AATT 5 cut(s) 69, 171, 231, 268, 476
TatI WGTACW 1 cut(s) 586
TfiI GAWTC 4 cut(s) 10, 129, 182, 466
Tru1I TTAA 2 cut(s) 536, 543
Tru9I TTAA 2 cut(s) 536, 543
TscAI CASTG 2 cut(s) 45, 151
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 2 cut(s) 452, 485
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 5 cut(s) 77, 231, 381, 489, 642
TspMI CCCGGG 1 cut(s) 360
TspRI CASTG 2 cut(s) 45, 151
VpaK11BI GGWCC 2 cut(s) 314, 602
XapI RAATTY 2 cut(s) 231, 476
XbaI TCTAGA 1 cut(s) 338
XhoI CTCGAG 1 cut(s) 627
XmaI CCCGGG 1 cut(s) 360
XspI CTAG 2 cut(s) 333, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.