AT2G41590

At4g02000-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005646
Physical Location & Seq
Forward (+)
17343360 .. 17345005
1646 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41590.1

Sequence Viewer

Length: 1104 bp
ATGTCGGATGAGTTGTGGAATGAGATACAAAACCTAGAATTAGGTCAAGAAGATCCAGCCCTTTTTATCCCTCATGAGGCTTATGTGATGGTGGAAGCTACCAATAGACTTAGTATGATAGCTAGACCTCTGAACCCAAGGGTCCAGAACCTCAATTCTGTTGTGGTAGCATTACCAAGAACATGGGGTTTAACAAATCAAGTTCATGGCAGAATACTTGATGCTACTTATGTTCAGTTTCTTTTTCAAAATGAAATTGATCTAATGATGGTTCAACGCAAGGAGCCTTGGCTTTTTAACAATTGGTTTGTTGCAGCTACTCGATGGGAGGTGGCACCGGCTCATAACTTCGTTACTACAATTGATCTGTGGGTGCAGATTCGTGGAATCCCTCTGCCATATGTTTCTGAGGAGACGGTTATGGAGATTGCTCAAGATCTGGGGGAAGTTCTTATGCTAGACTACCATGATACAACATCTATTCAGATTGCTTACATACGGGTGAGAGTGCGCTTTGGTATTACGGACAGGCTAAGGTTCTTTCAGCGAATTGTCTTTGACTCCGGGGAAACTGCAACAATAAGATTTCAGTATGAACGTCTCCGGAGAATCTGCAGTAGCTGCTTCAGATTCACTCACAACAGAGCTTATTGTCCATACCGACCAAGACCTCTCAGCATTGCAAGGGAAAGAGCTCTGTTTAGGGATAGTGTGCATCGTTCCTCCATGAACTCTCAGTCTCAGATGACTGATAGTTCATTTCCAATTCCCCAGACTCCACCACCAAGAATATCCCACCCACCACTGAATCATGATGAGTTTGTAGCTGCTTATCCTCACTTGGACTCAGGTAGGAATGACCACATCAGATGTGAGGGAGAATCAAGCAATTTCAGACAAGACTTGTCTTCAGCTTCAAACTCCATAACTCCAAGAAGGGAACCACAATACCTAACTGATAGAAGACACTTTGAACCTGGTCAATCCTCAAGAAGACATGATGTTCGGGATTTAAGAAGAGGGTCAGAGAGGATTGGGAATCTCAATCAACAGAACTATGTGCAAAGATCAGGAGGGATACTGAAACCTCCGAAGAAACGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

367

Amino Acids

42.89

Weight (kDa)

9.11

Isoelectric Point (pI)

49.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 33 - 110 3.9e-17 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 172 - 220 1.4e-21 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 334
AccIII TCCGGA 1 cut(s) 603
AclWI GGATC 1 cut(s) 47
AcuI CTGAAG 2 cut(s) 610, 894
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 4 cut(s) 248, 275, 918, 974
AjnI CCWGG 1 cut(s) 976
AluBI AGCT 8 cut(s) 98, 122, 317, 621, 647, 695, 827, 914
AluI AGCT 8 cut(s) 98, 122, 317, 621, 647, 695, 827, 914
Alw21I GWGCWC 1 cut(s) 697
Alw26I GTCTC 3 cut(s) 407, 605, 744
AlwI GGATC 1 cut(s) 47
AlwNI CAGNNNCTG 1 cut(s) 621
Aor13HI TCCGGA 1 cut(s) 603
ApeKI GCWGC 3 cut(s) 314, 621, 827
ArsI GACNNNNNNTTYG 2 cut(s) 987, 1019
AspLEI GCGC 1 cut(s) 513
AspS9I GGNCC 1 cut(s) 142
AsuC2I CCSGG 1 cut(s) 565
AsuHPI GGTGA 1 cut(s) 514
AvaII GGWCC 1 cut(s) 142
BanI GGYRCC 1 cut(s) 334
BanII GRGCYC 1 cut(s) 697
BbsI GAAGAC 3 cut(s) 900, 970, 1000
Bbv12I GWGCWC 1 cut(s) 697
BbvI GCAGC 3 cut(s) 326, 608, 814
BccI CCATC 3 cut(s) 82, 262, 318
BciT130I CCWGG 1 cut(s) 978
BciVI GTATCC 1 cut(s) 1071
BcnI CCSGG 1 cut(s) 565
BcoDI GTCTC 3 cut(s) 407, 605, 744
BfaI CTAG 3 cut(s) 35, 123, 458
BfmI CTRYAG 1 cut(s) 613
BfuI GTATCC 1 cut(s) 1071
BglII AGATCT 1 cut(s) 436
BisI GCNGC 3 cut(s) 315, 622, 828
BlsI GCNGC 3 cut(s) 316, 623, 829
Bme1390I CCNGG 2 cut(s) 565, 978
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 4 cut(s) 143, 285, 336, 942
BmrFI CCNGG 2 cut(s) 565, 978
BmsI GCATC 2 cut(s) 211, 724
BpiI GAAGAC 3 cut(s) 900, 970, 1000
Bpu10I CCTNAGC 1 cut(s) 533
BpuEI CTTGAG 2 cut(s) 417, 973
BpuMI CCSGG 1 cut(s) 565
BsaJI CCNNGG 3 cut(s) 137, 287, 564
BsaWI WCCGGW 1 cut(s) 603
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse118I RCCGGY 1 cut(s) 337
Bse3DI GCAATG 1 cut(s) 678
BseAI TCCGGA 1 cut(s) 603
BseBI CCWGG 1 cut(s) 978
BseDI CCNNGG 3 cut(s) 137, 287, 564
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMI GCAATG 1 cut(s) 678
BseMII CTCAG 5 cut(s) 399, 688, 749, 755, 861
BseRI GAGGAG 1 cut(s) 425
BseXI GCAGC 3 cut(s) 326, 608, 814
BsgI GTGCAG 1 cut(s) 395
BshNI GGYRCC 1 cut(s) 334
BsiHKAI GWGCWC 1 cut(s) 697
BsiSI CCGG 3 cut(s) 338, 564, 604
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 3 cut(s) 407, 605, 744
BsmBI CGTCTC 2 cut(s) 407, 605
Bsp1286I GDGCHC 1 cut(s) 697
Bsp13I TCCGGA 1 cut(s) 603
Bsp143I GATC 5 cut(s) 52, 259, 364, 436, 1067
BspCNI CTCAG 5 cut(s) 400, 687, 748, 754, 860
BspEI TCCGGA 1 cut(s) 603
BspHI TCATGA 2 cut(s) 73, 811
BspLI GGNNCC 4 cut(s) 143, 285, 336, 942
BspMAI CTGCAG 1 cut(s) 617
BspPI GGATC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 334
BsrDI GCAATG 1 cut(s) 678
BsrFI RCCGGY 1 cut(s) 337
BssAI RCCGGY 1 cut(s) 337
BssECI CCNNGG 3 cut(s) 137, 287, 564
BssMI GATC 5 cut(s) 52, 259, 364, 436, 1067
BssT1I CCWWGG 2 cut(s) 137, 287
Bst2UI CCWGG 1 cut(s) 978
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 1 cut(s) 1012
BstAPI GCANNNNNTGC 1 cut(s) 621
BstDEI CTNAG 7 cut(s) 110, 408, 533, 674, 735, 741, 847
BstF5I GGATG 1 cut(s) 13
BstHHI GCGC 1 cut(s) 513
BstKTI GATC 5 cut(s) 55, 262, 367, 439, 1070
BstMAI GTCTC 3 cut(s) 407, 605, 744
BstMBI GATC 5 cut(s) 52, 259, 364, 436, 1067
BstMWI GCNNNNNNNGC 1 cut(s) 621
BstNI CCWGG 1 cut(s) 978
BstSCI CCNGG 2 cut(s) 563, 976
BstSFI CTRYAG 1 cut(s) 613
BstV1I GCAGC 3 cut(s) 326, 608, 814
BstV2I GAAGAC 3 cut(s) 900, 970, 1000
BstX2I RGATCY 2 cut(s) 52, 436
BstXI CCANNNNNNTGG 1 cut(s) 183
BstYI RGATCY 2 cut(s) 52, 436
BsuI GTATCC 1 cut(s) 1071
BtsCI GGATG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 803
CaiI CAGNNNCTG 1 cut(s) 621
CciI TCATGA 2 cut(s) 73, 811
CfoI GCGC 1 cut(s) 513
Cfr10I RCCGGY 1 cut(s) 337
Cfr13I GGNCC 1 cut(s) 142
CsiI ACCWGGT 1 cut(s) 976
CviAII CATG 7 cut(s) 74, 183, 206, 467, 727, 812, 998
DdeI CTNAG 7 cut(s) 110, 408, 533, 674, 735, 741, 847
DpnI GATC 5 cut(s) 54, 261, 366, 438, 1069
DpnII GATC 5 cut(s) 52, 259, 364, 436, 1067
Eam1104I CTCTTC 1 cut(s) 1012
EarI CTCTTC 1 cut(s) 1012
Ecl136II GAGCTC 1 cut(s) 695
Eco130I CCWWGG 2 cut(s) 137, 287
Eco24I GRGCYC 1 cut(s) 697
Eco47I GGWCC 1 cut(s) 142
Eco53kI GAGCTC 1 cut(s) 695
Eco57I CTGAAG 2 cut(s) 610, 894
EcoICRI GAGCTC 1 cut(s) 695
EcoRII CCWGG 1 cut(s) 976
EcoT14I CCWWGG 2 cut(s) 137, 287
EcoT38I GRGCYC 1 cut(s) 697
ErhI CCWWGG 2 cut(s) 137, 287
Esp3I CGTCTC 2 cut(s) 407, 605
FaeI CATG 7 cut(s) 77, 186, 209, 470, 730, 815, 1001
FatI CATG 7 cut(s) 73, 182, 205, 466, 726, 811, 997
FauNDI CATATG 1 cut(s) 400
Fnu4HI GCNGC 3 cut(s) 315, 622, 828
FokI GGATG 1 cut(s) 20
FriOI GRGCYC 1 cut(s) 697
Fsp4HI GCNGC 3 cut(s) 315, 622, 828
FspBI CTAG 3 cut(s) 35, 123, 458
GlaI GCGC 1 cut(s) 512
GluI GCNGC 3 cut(s) 315, 622, 828
HapII CCGG 3 cut(s) 338, 564, 604
HhaI GCGC 1 cut(s) 513
Hin1II CATG 7 cut(s) 77, 186, 209, 470, 730, 815, 1001
Hin6I GCGC 1 cut(s) 511
HinP1I GCGC 1 cut(s) 511
HpaII CCGG 3 cut(s) 338, 564, 604
HphI GGTGA 1 cut(s) 514
Hpy188III TCNNGA 9 cut(s) 47, 74, 145, 434, 604, 812, 990, 1007, 1071
HpyAV CCTTC 1 cut(s) 930
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4IV ACGT 1 cut(s) 598
HpyCH4V TGCA 7 cut(s) 314, 376, 575, 615, 683, 715, 1063
HpyF10VI GCNNNNNNNGC 1 cut(s) 621
HpyF3I CTNAG 7 cut(s) 110, 408, 533, 674, 735, 741, 847
HpySE526I ACGT 1 cut(s) 598
Hsp92II CATG 7 cut(s) 77, 186, 209, 470, 730, 815, 1001
HspAI GCGC 1 cut(s) 511
Kpn2I TCCGGA 1 cut(s) 603
Kzo9I GATC 5 cut(s) 52, 259, 364, 436, 1067
LmnI GCTCC 1 cut(s) 283
Lsp1109I GCAGC 3 cut(s) 326, 608, 814
LweI GCATC 2 cut(s) 211, 724
MabI ACCWGGT 1 cut(s) 976
MaeI CTAG 3 cut(s) 35, 123, 458
MaeII ACGT 1 cut(s) 598
MaeIII GTNAC 1 cut(s) 352
MalI GATC 5 cut(s) 54, 261, 366, 438, 1069
MboI GATC 5 cut(s) 52, 259, 364, 436, 1067
MboII GAAGA 5 cut(s) 62, 900, 975, 1005, 1029
MfeI CAATTG 2 cut(s) 301, 360
MflI RGATCY 2 cut(s) 52, 436
MhlI GDGCHC 1 cut(s) 697
MluCI AATT 8 cut(s) 38, 154, 255, 301, 360, 549, 765, 889
MlyI GAGTC 3 cut(s) 554, 769, 839
MroI TCCGGA 1 cut(s) 603
MseI TTAA 3 cut(s) 191, 297, 1013
MslI CAYNNNNRTG 1 cut(s) 500
MspI CCGG 3 cut(s) 338, 564, 604
MspR9I CCNGG 2 cut(s) 565, 978
MunI CAATTG 2 cut(s) 301, 360
MvaI CCWGG 1 cut(s) 978
MwoI GCNNNNNNNGC 1 cut(s) 621
NciI CCSGG 1 cut(s) 565
NdeI CATATG 1 cut(s) 400
NdeII GATC 5 cut(s) 52, 259, 364, 436, 1067
NlaIII CATG 7 cut(s) 77, 186, 209, 470, 730, 815, 1001
NlaIV GGNNCC 4 cut(s) 143, 285, 336, 942
PagI TCATGA 2 cut(s) 73, 811
PfeI GAWTC 7 cut(s) 379, 387, 609, 630, 808, 881, 1039
PkrI GCNGC 3 cut(s) 316, 623, 829
PleI GAGTC 3 cut(s) 554, 769, 839
PpsI GAGTC 3 cut(s) 554, 769, 839
Psp124BI GAGCTC 1 cut(s) 697
Psp6I CCWGG 1 cut(s) 976
PspGI CCWGG 1 cut(s) 976
PspN4I GGNNCC 4 cut(s) 143, 285, 336, 942
PspPI GGNCC 1 cut(s) 142
PstI CTGCAG 1 cut(s) 617
PstNI CAGNNNCTG 1 cut(s) 621
PsuI RGATCY 2 cut(s) 52, 436
RseI CAYNNNNRTG 1 cut(s) 500
SacI GAGCTC 1 cut(s) 697
SaqAI TTAA 3 cut(s) 191, 297, 1013
SatI GCNGC 3 cut(s) 315, 622, 828
Sau3AI GATC 5 cut(s) 52, 259, 364, 436, 1067
Sau96I GGNCC 1 cut(s) 142
SchI GAGTC 3 cut(s) 554, 769, 839
ScrFI CCNGG 2 cut(s) 565, 978
SduI GDGCHC 1 cut(s) 697
SexAI ACCWGGT 1 cut(s) 976
SfaNI GCATC 2 cut(s) 211, 724
SfcI CTRYAG 1 cut(s) 613
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 500
SmlI CTYRAG 2 cut(s) 432, 988
SmoI CTYRAG 2 cut(s) 432, 988
Sse9I AATT 8 cut(s) 38, 154, 255, 301, 360, 549, 765, 889
SspMI CTAG 3 cut(s) 35, 123, 458
SstI GAGCTC 1 cut(s) 697
StyD4I CCNGG 2 cut(s) 563, 976
StyI CCWWGG 2 cut(s) 137, 287
TaaI ACNGT 1 cut(s) 418
TaiI ACGT 1 cut(s) 601
TaqI TCGA 1 cut(s) 322
TasI AATT 8 cut(s) 38, 154, 255, 301, 360, 549, 765, 889
TfiI GAWTC 7 cut(s) 379, 387, 609, 630, 808, 881, 1039
Tru1I TTAA 3 cut(s) 191, 297, 1013
Tru9I TTAA 3 cut(s) 191, 297, 1013
TscAI CASTG 1 cut(s) 810
TseI GCWGC 3 cut(s) 314, 621, 827
TspDTI ATGAA 5 cut(s) 194, 267, 609, 743, 747
TspGWI ACGGA 1 cut(s) 539
TspRI CASTG 1 cut(s) 810
VpaK11BI GGWCC 1 cut(s) 142
XspI CTAG 3 cut(s) 35, 123, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.