AT2G17920

At4g02000-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005646
Physical Location & Seq
Forward (+)
7782712 .. 7784287
1576 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17920.1

Sequence Viewer

Length: 924 bp
ATGGCGGATGAGCTTTGGGACGAAATACAGAATTTGGAGTTGAGACAGGAGGGTCCTTCTTTGTTCATCCCAAATGAAGCATACATCATGGTTGCAGGCCGGAACAGACTTAGCATCATTGCTCGACCTCTGAATCCAAGGGTCCAAAACCTTCAGGCTATTATTACTGCTCTACCTAGAGCCTGGGGCTTAACAGCTCATGTTCATGGCAGGATTATAGATGATACATATGTGCAATTCCTCTTTCAGTCGGAAATGGACCTGCTATCAGTTCAAAGGAGGGAACCCTGGCTTTTCAACAATTGGTTTGTCGCATCTCAACGTTGGCAGCCTGCTCCTGCTTTGAACTTTGTGACAACCATTGATCTCTGGGTTCAGATGAGAGGTATTCCCTTCCTTTATGTATCTGAAGAAACTGCTTTAGAAATAGCTCAAGAGATTGGTGCAATCATTTCCTTGGACTTTCATGATACTACATCAACTCAGATTGCTTATATTAGAGTTCGAGTTCGTGTTGGTATTACAGACAGTTTAAGGTTCTTTCAACGCATCACGTTTGAGTCGGGAGAATCAGCTTTAATCAGGTTTCAGTATGAACGTTTAAGGCGTATTTGTAGTAACTGTTTCAGGTTTACTCACAACAGAAACTACTGTCCTTACCGTCCAAGGGTTCAGATTCTAGACAGAGAGAGAGCAGCTTTACATGACAGTGTATTAAGATCAAGCAACAACTCTCAGTCTCAGATGACTGAAAGTTCTTTCCCTGCTCCTTTAACCCCTCCTCCACGAGTGCCTGCACCACCACTGAATCACCAAGAGTTAGCTGCTGCTACTCCCTACTTCCCATCTAAGAACTGCAGCTTTCCAGCCTTACACTCATCCTACTACTCAAAGTGGTATTGGCAGACTTCAAGCTTCCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

307

Amino Acids

35.64

Weight (kDa)

8.37

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 33 - 112 1.1e-19 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 172 - 220 1.1e-21 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 51
Acc36I ACCTGC 1 cut(s) 270
AciI CCGC 1 cut(s) 5
AclI AACGTT 2 cut(s) 322, 598
AcsI RAATTY 1 cut(s) 31
AcuI CTGAAG 2 cut(s) 137, 429
AfiI CCNNNNNNNGG 1 cut(s) 667
AgsI TTSAA 5 cut(s) 275, 298, 346, 545, 912
AjnI CCWGG 2 cut(s) 182, 287
AluBI AGCT 8 cut(s) 13, 197, 431, 575, 698, 824, 861, 915
AluI AGCT 8 cut(s) 13, 197, 431, 575, 698, 824, 861, 915
Alw26I GTCTC 2 cut(s) 37, 744
AoxI GGCC 1 cut(s) 97
ApeKI GCWGC 5 cut(s) 328, 695, 824, 827, 858
ApoI RAATTY 1 cut(s) 31
AspS9I GGNCC 3 cut(s) 53, 142, 259
AsuHPI GGTGA 1 cut(s) 803
AvaII GGWCC 3 cut(s) 53, 142, 259
BaeI ACNNNNGTAYC 2 cut(s) 216, 249
BauI CACGAG 1 cut(s) 786
BbvI GCAGC 5 cut(s) 340, 707, 811, 814, 870
BccI CCATC 1 cut(s) 853
BciT130I CCWGG 2 cut(s) 184, 289
BcoDI GTCTC 2 cut(s) 37, 744
BfaI CTAG 2 cut(s) 177, 680
BfmI CTRYAG 1 cut(s) 856
BfuAI ACCTGC 1 cut(s) 270
BisI GCNGC 5 cut(s) 329, 696, 825, 828, 859
BlsI GCNGC 5 cut(s) 330, 697, 826, 829, 860
Bme1390I CCNGG 2 cut(s) 184, 289
Bme18I GGWCC 3 cut(s) 53, 142, 259
BmgT120I GGNCC 3 cut(s) 53, 142, 259
BmiI GGNNCC 3 cut(s) 54, 143, 285
BmrFI CCNGG 2 cut(s) 184, 289
BmsI GCATC 3 cut(s) 123, 323, 558
BpuEI CTTGAG 1 cut(s) 417
BsaJI CCNNGG 5 cut(s) 137, 183, 287, 456, 665
BsaXI ACNNNNNCTCC 2 cut(s) 766, 796
Bsc4I CCNNNNNNNGG 1 cut(s) 667
Bse3DI GCAATG 1 cut(s) 117
BseBI CCWGG 2 cut(s) 184, 289
BseDI CCNNGG 5 cut(s) 137, 183, 287, 456, 665
BseGI GGATG 3 cut(s) 13, 66, 878
BseLI CCNNNNNNNGG 1 cut(s) 667
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 3 cut(s) 497, 749, 755
BseRI GAGGAG 1 cut(s) 771
BseXI GCAGC 5 cut(s) 340, 707, 811, 814, 870
BsgI GTGCAG 1 cut(s) 780
BshFI GGCC 1 cut(s) 99
BsiSI CCGG 1 cut(s) 100
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 667
BsmAI GTCTC 2 cut(s) 37, 744
BsmFI GGGAC 1 cut(s) 32
BsnI GGCC 1 cut(s) 99
Bsp143I GATC 2 cut(s) 364, 719
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 3 cut(s) 496, 748, 754
BspHI TCATGA 1 cut(s) 466
BspLI GGNNCC 3 cut(s) 54, 143, 285
BspMAI CTGCAG 1 cut(s) 860
BspMI ACCTGC 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 117
BssECI CCNNGG 5 cut(s) 137, 183, 287, 456, 665
BssMI GATC 2 cut(s) 364, 719
BssSI CACGAG 1 cut(s) 786
BssT1I CCWWGG 3 cut(s) 137, 456, 665
Bst2BI CACGAG 1 cut(s) 786
Bst2UI CCWGG 2 cut(s) 184, 289
Bst4CI ACNGT 5 cut(s) 530, 623, 653, 662, 710
BstC8I GCNNGC 3 cut(s) 97, 333, 795
BstDEI CTNAG 5 cut(s) 110, 483, 735, 741, 849
BstF5I GGATG 3 cut(s) 13, 66, 878
BstKTI GATC 2 cut(s) 367, 722
BstMAI GTCTC 2 cut(s) 37, 744
BstMBI GATC 2 cut(s) 364, 719
BstNI CCWGG 2 cut(s) 184, 289
BstSCI CCNGG 2 cut(s) 182, 287
BstSFI CTRYAG 1 cut(s) 856
BstV1I GCAGC 5 cut(s) 340, 707, 811, 814, 870
BsuRI GGCC 1 cut(s) 99
BtsCI GGATG 3 cut(s) 13, 66, 878
BtsIMutI CAGTG 2 cut(s) 715, 803
BveI ACCTGC 1 cut(s) 270
Cac8I GCNNGC 3 cut(s) 97, 333, 795
CciI TCATGA 1 cut(s) 466
Cfr13I GGNCC 3 cut(s) 53, 142, 259
CviAII CATG 5 cut(s) 88, 200, 206, 467, 704
DdeI CTNAG 5 cut(s) 110, 483, 735, 741, 849
DpnI GATC 2 cut(s) 366, 721
DpnII GATC 2 cut(s) 364, 719
DrdI GACNNNNNNGTC 1 cut(s) 51
DseDI GACNNNNNNGTC 1 cut(s) 51
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 3 cut(s) 137, 456, 665
Eco47I GGWCC 3 cut(s) 53, 142, 259
Eco57I CTGAAG 2 cut(s) 137, 429
EcoO109I RGGNCCY 1 cut(s) 53
EcoRII CCWGG 2 cut(s) 182, 287
EcoT14I CCWWGG 3 cut(s) 137, 456, 665
ErhI CCWWGG 3 cut(s) 137, 456, 665
FaeI CATG 5 cut(s) 91, 203, 209, 470, 707
FaqI GGGAC 1 cut(s) 32
FatI CATG 5 cut(s) 87, 199, 205, 466, 703
FauNDI CATATG 1 cut(s) 229
Fnu4HI GCNGC 5 cut(s) 329, 696, 825, 828, 859
FokI GGATG 3 cut(s) 20, 53, 865
Fsp4HI GCNGC 5 cut(s) 329, 696, 825, 828, 859
FspBI CTAG 2 cut(s) 177, 680
GluI GCNGC 5 cut(s) 329, 696, 825, 828, 859
HaeIII GGCC 1 cut(s) 99
HapII CCGG 1 cut(s) 100
Hin1II CATG 5 cut(s) 91, 203, 209, 470, 707
HindIII AAGCTT 1 cut(s) 913
HinfI GANTC 5 cut(s) 133, 560, 569, 676, 808
HpaII CCGG 1 cut(s) 100
HphI GGTGA 1 cut(s) 803
Hpy166II GTNNAC 1 cut(s) 633
Hpy188I TCNGA 7 cut(s) 132, 253, 378, 409, 486, 675, 744
Hpy188III TCNNGA 4 cut(s) 434, 467, 564, 680
Hpy8I GTNNAC 1 cut(s) 633
HpyAV CCTTC 3 cut(s) 66, 161, 403
HpyCH4III ACNGT 5 cut(s) 530, 623, 653, 662, 710
HpyCH4IV ACGT 3 cut(s) 322, 554, 598
HpyCH4V TGCA 5 cut(s) 95, 235, 446, 797, 858
HpyF3I CTNAG 5 cut(s) 110, 483, 735, 741, 849
HpySE526I ACGT 3 cut(s) 322, 554, 598
Hsp92II CATG 5 cut(s) 91, 203, 209, 470, 707
Kzo9I GATC 2 cut(s) 364, 719
LmnI GCTCC 2 cut(s) 340, 772
Lsp1109I GCAGC 5 cut(s) 340, 707, 811, 814, 870
LweI GCATC 3 cut(s) 123, 323, 558
MaeI CTAG 2 cut(s) 177, 680
MaeII ACGT 3 cut(s) 322, 554, 598
MaeIII GTNAC 2 cut(s) 352, 617
MalI GATC 2 cut(s) 366, 721
MboI GATC 2 cut(s) 364, 719
MboII GAAGA 1 cut(s) 422
MfeI CAATTG 1 cut(s) 301
MluCI AATT 3 cut(s) 31, 236, 301
MlyI GAGTC 1 cut(s) 569
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 7 cut(s) 43, 138, 251, 273, 377, 789, 792
MseI TTAA 6 cut(s) 191, 533, 578, 602, 716, 773
MslI CAYNNNNRTG 2 cut(s) 204, 708
MspI CCGG 1 cut(s) 100
MspR9I CCNGG 2 cut(s) 184, 289
MunI CAATTG 1 cut(s) 301
MvaI CCWGG 2 cut(s) 184, 289
NdeI CATATG 1 cut(s) 229
NdeII GATC 2 cut(s) 364, 719
NlaIII CATG 5 cut(s) 91, 203, 209, 470, 707
NlaIV GGNNCC 3 cut(s) 54, 143, 285
NmuCI GTSAC 1 cut(s) 352
PagI TCATGA 1 cut(s) 466
PcsI WCGNNNNNNNCGW 1 cut(s) 604
PfeI GAWTC 4 cut(s) 133, 569, 676, 808
PkrI GCNGC 5 cut(s) 330, 697, 826, 829, 860
PleI GAGTC 1 cut(s) 568
PpsI GAGTC 1 cut(s) 568
PpuMI RGGWCCY 1 cut(s) 53
Psp1406I AACGTT 2 cut(s) 322, 598
Psp5II RGGWCCY 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 182, 287
PspGI CCWGG 2 cut(s) 182, 287
PspN4I GGNNCC 3 cut(s) 54, 143, 285
PspPI GGNCC 3 cut(s) 53, 142, 259
PspPPI RGGWCCY 1 cut(s) 53
PstI CTGCAG 1 cut(s) 860
RseI CAYNNNNRTG 2 cut(s) 204, 708
SaqAI TTAA 6 cut(s) 191, 533, 578, 602, 716, 773
SatI GCNGC 5 cut(s) 329, 696, 825, 828, 859
Sau3AI GATC 2 cut(s) 364, 719
Sau96I GGNCC 3 cut(s) 53, 142, 259
SchI GAGTC 1 cut(s) 569
ScrFI CCNGG 2 cut(s) 184, 289
SfaNI GCATC 3 cut(s) 123, 323, 558
SfcI CTRYAG 1 cut(s) 856
SinI GGWCC 3 cut(s) 53, 142, 259
SmiMI CAYNNNNRTG 2 cut(s) 204, 708
SmlI CTYRAG 1 cut(s) 432
SmoI CTYRAG 1 cut(s) 432
Sse9I AATT 3 cut(s) 31, 236, 301
SsiI CCGC 1 cut(s) 5
SspMI CTAG 2 cut(s) 177, 680
StyD4I CCNGG 2 cut(s) 182, 287
StyI CCWWGG 3 cut(s) 137, 456, 665
TaaI ACNGT 5 cut(s) 530, 623, 653, 662, 710
TaiI ACGT 3 cut(s) 325, 557, 601
TaqI TCGA 2 cut(s) 124, 505
TasI AATT 3 cut(s) 31, 236, 301
TfiI GAWTC 4 cut(s) 133, 569, 676, 808
Tru1I TTAA 6 cut(s) 191, 533, 578, 602, 716, 773
Tru9I TTAA 6 cut(s) 191, 533, 578, 602, 716, 773
TscAI CASTG 2 cut(s) 715, 810
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 5 cut(s) 328, 695, 824, 827, 858
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 5 cut(s) 55, 90, 194, 455, 609
TspRI CASTG 2 cut(s) 715, 810
VpaK11BI GGWCC 3 cut(s) 53, 142, 259
XapI RAATTY 1 cut(s) 31
XbaI TCTAGA 1 cut(s) 679
XspI CTAG 2 cut(s) 177, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.