AT1G43680

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005646
Physical Location & Seq
Forward (+)
16472205 .. 16473343
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G43680.1

Sequence Viewer

Length: 744 bp
ATGAGTGATGAATTATGGAATGACATCCAACATATGGAATTGGGTCGTGAACTCTTTATTCCATATCATGCTTATGCTGGAGCTTTTGCTTCTAATAGATTAAGTCATCTTGGAAGAATTCTTAATCCTCAAACTCAAAGTGTTGAAAGAGCTATACTGGAGTTACCTTATCAGTGGGGCCTAGGTTCTCAAGTTCATGGACATATCCTTGATGACAGAGGAATACATTCACCTTATGTATCAGAGAGGACAATTGAGTTCATTGCAAGTACTTTAGGTGAGGTTGTGGCTATGGATTTCAATGAAGAAACTACAACGCAGATTACCTTCATTCGAGTCAAGGATTTAGATGATGAATCAGAAGTGATGGTAATTCCAGAGAGGCATGATGGTGAAGGCTCCAACAGCCTCAATCGATGGGATCAAGAGATTAACTCACAAAATTCTAATATCTCAACGTATTCACCTCTGCATGATTTTCCTGTTGTAAGCTGGAATTTTTATACTGCAGGCAACCTACCTCATCGATTCTCATCATCTTCAAACTCATCTACTCCTATAGCTTCAGCTAGTTTTCTTGCAGCTTCAGGATGGAGACCTACAACTAGACCTACCTATGAATTTGGTGAGAGTTCCAAGCGAAAGAAAGGAAAGCAAGTGTGGGAAGATCCTGAACGCAACATCCGACAGAGACGTATGGAACTGGGGATAAGGTTTTATCTGGTGGATGGTGAGGCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

28.18

Weight (kDa)

5.27

Isoelectric Point (pI)

54.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 34
AclWI GGATC 2 cut(s) 429, 662
AcsI RAATTY 4 cut(s) 117, 442, 496, 620
AcuI CTGAAG 2 cut(s) 549, 570
AfaI GTAC 1 cut(s) 271
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 3 cut(s) 146, 301, 543
AloI GAACNNNNNNTCC 2 cut(s) 666, 698
AluBI AGCT 6 cut(s) 83, 152, 492, 563, 569, 584
AluI AGCT 6 cut(s) 83, 152, 492, 563, 569, 584
Alw26I GTCTC 2 cut(s) 589, 685
AlwI GGATC 2 cut(s) 429, 662
AoxI GGCC 1 cut(s) 178
ApeKI GCWGC 1 cut(s) 581
ApoI RAATTY 4 cut(s) 117, 442, 496, 620
Asp700I GAANNNNTTC 1 cut(s) 226
AspA2I CCTAGG 1 cut(s) 181
AspS9I GGNCC 1 cut(s) 178
AsuHPI GGTGA 6 cut(s) 222, 290, 404, 456, 638, 743
AvrII CCTAGG 1 cut(s) 181
BbvI GCAGC 1 cut(s) 593
BccI CCATC 5 cut(s) 361, 383, 411, 585, 722
BcoDI GTCTC 2 cut(s) 589, 685
BfaI CTAG 3 cut(s) 182, 570, 606
BfmI CTRYAG 2 cut(s) 507, 558
BisI GCNGC 1 cut(s) 582
BlnI CCTAGG 1 cut(s) 181
BlsI GCNGC 1 cut(s) 583
BmcAI AGTACT 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 3 cut(s) 179, 400, 738
BmrI ACTGGG 1 cut(s) 713
BmuI ACTGGG 1 cut(s) 713
BplI GAGNNNNNCTC 2 cut(s) 419, 451
BpmI CTGGAG 2 cut(s) 99, 179
BpuEI CTTGAG 1 cut(s) 174
Bsa29I ATCGAT 2 cut(s) 415, 526
BsaBI GATNNNNATC 1 cut(s) 532
BsaI GGTCTC 1 cut(s) 589
BsaJI CCNNGG 1 cut(s) 181
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse1I ACTGG 2 cut(s) 162, 708
Bse3DI GCAATG 1 cut(s) 261
Bse8I GATNNNNATC 1 cut(s) 532
BseCI ATCGAT 2 cut(s) 415, 526
BseDI CCNNGG 1 cut(s) 181
BseGI GGATG 4 cut(s) 24, 596, 681, 733
BseJI GATNNNNATC 1 cut(s) 532
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 261
BseNI ACTGG 2 cut(s) 162, 708
BseXI GCAGC 1 cut(s) 593
BshFI GGCC 1 cut(s) 180
BshVI ATCGAT 2 cut(s) 415, 526
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 2 cut(s) 589, 685
BsmBI CGTCTC 1 cut(s) 685
BsnI GGCC 1 cut(s) 180
Bso31I GGTCTC 1 cut(s) 589
Bsp143I GATC 2 cut(s) 421, 667
BspANI GGCC 1 cut(s) 180
BspDI ATCGAT 2 cut(s) 415, 526
BspLI GGNNCC 3 cut(s) 179, 400, 738
BspMAI CTGCAG 1 cut(s) 511
BspPI GGATC 2 cut(s) 429, 662
BspTNI GGTCTC 1 cut(s) 589
BsrDI GCAATG 1 cut(s) 261
BsrI ACTGG 2 cut(s) 162, 708
BssECI CCNNGG 1 cut(s) 181
BssMI GATC 2 cut(s) 421, 667
BssT1I CCWWGG 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 511
BstF5I GGATG 4 cut(s) 24, 596, 681, 733
BstKTI GATC 2 cut(s) 424, 670
BstMAI GTCTC 2 cut(s) 589, 685
BstMBI GATC 2 cut(s) 421, 667
BstMWI GCNNNNNNNGC 1 cut(s) 405
BstSFI CTRYAG 2 cut(s) 507, 558
BstV1I GCAGC 1 cut(s) 593
BstX2I RGATCY 1 cut(s) 667
BstYI RGATCY 1 cut(s) 667
Bsu15I ATCGAT 2 cut(s) 415, 526
BsuRI GGCC 1 cut(s) 180
BsuTUI ATCGAT 2 cut(s) 415, 526
BtsCI GGATG 4 cut(s) 24, 596, 681, 733
BtsIMutI CAGTG 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 511
Cfr13I GGNCC 1 cut(s) 178
ClaI ATCGAT 2 cut(s) 415, 526
Csp6I GTAC 1 cut(s) 270
CviAII CATG 4 cut(s) 68, 197, 386, 473
CviQI GTAC 1 cut(s) 270
DpnI GATC 2 cut(s) 423, 669
DpnII GATC 2 cut(s) 421, 667
Eco130I CCWWGG 1 cut(s) 181
Eco31I GGTCTC 1 cut(s) 589
Eco57I CTGAAG 2 cut(s) 549, 570
EcoO109I RGGNCCY 1 cut(s) 178
EcoRI GAATTC 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 181
Esp3I CGTCTC 1 cut(s) 685
FaeI CATG 4 cut(s) 71, 200, 389, 476
FatI CATG 4 cut(s) 67, 196, 385, 472
FauNDI CATATG 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 582
FokI GGATG 4 cut(s) 11, 603, 668, 740
Fsp4HI GCNGC 1 cut(s) 582
FspBI CTAG 3 cut(s) 182, 570, 606
GluI GCNGC 1 cut(s) 582
GsuI CTGGAG 2 cut(s) 99, 179
HaeIII GGCC 1 cut(s) 180
Hin1II CATG 4 cut(s) 71, 200, 389, 476
HinfI GANTC 3 cut(s) 336, 356, 528
HphI GGTGA 6 cut(s) 222, 290, 404, 456, 638, 743
Hpy166II GTNNAC 1 cut(s) 50
Hpy188I TCNGA 3 cut(s) 244, 361, 686
Hpy188III TCNNGA 5 cut(s) 47, 377, 425, 588, 671
Hpy8I GTNNAC 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 337, 389
HpyCH4IV ACGT 2 cut(s) 458, 694
HpyCH4V TGCA 4 cut(s) 266, 472, 509, 581
HpyF10VI GCNNNNNNNGC 1 cut(s) 405
HpySE526I ACGT 2 cut(s) 458, 694
Hsp92II CATG 4 cut(s) 71, 200, 389, 476
Kzo9I GATC 2 cut(s) 421, 667
LmnI GCTCC 3 cut(s) 80, 404, 742
Lsp1109I GCAGC 1 cut(s) 593
MaeI CTAG 3 cut(s) 182, 570, 606
MaeII ACGT 2 cut(s) 458, 694
MaeIII GTNAC 1 cut(s) 162
MalI GATC 2 cut(s) 423, 669
MboI GATC 2 cut(s) 421, 667
MboII GAAGA 4 cut(s) 126, 317, 531, 677
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 1 cut(s) 667
MluCI AATT 8 cut(s) 11, 38, 117, 252, 372, 442, 496, 620
MlyI GAGTC 1 cut(s) 345
MmeI TCCRAC 3 cut(s) 52, 426, 709
MnlI CCTC 9 cut(s) 138, 212, 240, 274, 375, 419, 477, 531, 727
MroXI GAANNNNTTC 1 cut(s) 226
MseI TTAA 4 cut(s) 101, 123, 432, 742
MslI CAYNNNNRTG 2 cut(s) 72, 390
MunI CAATTG 1 cut(s) 252
MwoI GCNNNNNNNGC 1 cut(s) 405
NdeI CATATG 1 cut(s) 33
NdeII GATC 2 cut(s) 421, 667
NlaIII CATG 4 cut(s) 71, 200, 389, 476
NlaIV GGNNCC 3 cut(s) 179, 400, 738
PcsI WCGNNNNNNNCGW 1 cut(s) 682
PdmI GAANNNNTTC 1 cut(s) 226
PfeI GAWTC 2 cut(s) 356, 528
PflMI CCANNNNNTGG 1 cut(s) 34
PkrI GCNGC 1 cut(s) 583
PleI GAGTC 1 cut(s) 344
PpsI GAGTC 1 cut(s) 344
PspN4I GGNNCC 3 cut(s) 179, 400, 738
PspPI GGNCC 1 cut(s) 178
PstI CTGCAG 1 cut(s) 511
PsuI RGATCY 1 cut(s) 667
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
RseI CAYNNNNRTG 2 cut(s) 72, 390
SaqAI TTAA 4 cut(s) 101, 123, 432, 742
SatI GCNGC 1 cut(s) 582
Sau3AI GATC 2 cut(s) 421, 667
Sau96I GGNCC 1 cut(s) 178
ScaI AGTACT 1 cut(s) 271
SchI GAGTC 1 cut(s) 345
SfcI CTRYAG 2 cut(s) 507, 558
SmiMI CAYNNNNRTG 2 cut(s) 72, 390
SmlI CTYRAG 1 cut(s) 189
SmoI CTYRAG 1 cut(s) 189
Sse9I AATT 8 cut(s) 11, 38, 117, 252, 372, 442, 496, 620
SspMI CTAG 3 cut(s) 182, 570, 606
StyI CCWWGG 1 cut(s) 181
TaiI ACGT 2 cut(s) 461, 697
TaqI TCGA 3 cut(s) 334, 415, 526
TasI AATT 8 cut(s) 11, 38, 117, 252, 372, 442, 496, 620
TatI WGTACW 1 cut(s) 269
TfiI GAWTC 2 cut(s) 356, 528
Tru1I TTAA 4 cut(s) 101, 123, 432, 742
Tru9I TTAA 4 cut(s) 101, 123, 432, 742
TscAI CASTG 1 cut(s) 179
TseI GCWGC 1 cut(s) 581
TspDTI ATGAA 7 cut(s) 24, 185, 250, 318, 319, 369, 633
TspRI CASTG 1 cut(s) 179
Van91I CCANNNNNTGG 1 cut(s) 34
XapI RAATTY 4 cut(s) 117, 442, 496, 620
XmaJI CCTAGG 1 cut(s) 181
XmnI GAANNNNTTC 1 cut(s) 226
XspI CTAG 3 cut(s) 182, 570, 606
ZrmI AGTACT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.