AT3G57587

At4g02000-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005646
Physical Location & Seq
Forward (+)
21328263 .. 21329634
1372 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G57587.1

Sequence Viewer

Length: 1095 bp
ATGGCAGATGAATTGTGGGATGAAATTCAAGGCCTGGATCTAGGTCCTGAGGATCCAGCCCTCTTCATTCCCCATGAAGCTTATGTGTATGTTGAAGAGTTCAATCGACTGAGTATAATTGCAAGACCTCTCAACCCAAGAGTCCAAAACTTGAACGCGGTGATTGCAGCCTTACCTCGGTACTGGGGAATGACGGTGCATGTCCATGGAAGAATTCTGGATGCAACTTATGTTCAATTTCTCTTCCAAAATGAAGTTGACTTGCAGTCAGTACAAAGAAGAGAACCATGGATTTTCAACAACTGGTTCGTGGCTACTCAAAGATGGGAACCTGCTCCTGCTCTTAACTTTGTTACTTCTATTGATCTTTGGGTGCAGATTAGAGGAATTCCCCTGCCCTATGTGTGTGAAGAGACGGCTCTAGAGATAGCACGTGACTTAGGAGAAGTCATCATGCTGGATCATCATGACGCAACATCTACTCAAATTACTTATATCCGAGTTAGAGTGCGTTTTGGCATCACAGACAGGCTCAGATTCTTCCAACGAATCATCTTTGATTCGGGAGAAGTGGTTACCATCAGATTTCAATATGAGCGCCTCAGAAGAATCTGTAGCAGTTGCTTCAGGTTTACGCACAACAGAGCTTATTGTCCCTATAGACCACGTCCCCACAGCATAGCCAGAGAAAGAGCTGTCTTCAGAGACAGTGTTCATAGGTCAAGCTTGAACTCTCAATCGCAGATGACGGAGACTTCATTTCCTGCTCCTGTGACACCGCCTCCTAGAATTGCTCATCCACCACTGAATCCTGAAGAATTGAGAGCTGCGTATCCATACTATGCATCAGTTAGAGATACTCATACATTACATGTTGGAGAATCTAGTACTGCAAGACAACAATGGTCATCGAGTTCTAGTACCACTCCAACAAGAGCAGACACTCCTAATCATGATAACAACAGAGTCTTTGAAGTCGGTCAATCCTCAAGAAGACAGGAAGTAAGAAGAGAAGCAGAGGATCCTAGACTTCAAACTCGTCTACACAGTGCTTCAAGAATGGGAGAGAGTCTGAAACCTCCCAAAAAGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

364

Amino Acids

42.33

Weight (kDa)

8.69

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 32 - 112 2.2e-18 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 172 - 220 5.5e-21 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 340
AccI GTMKAC 1 cut(s) 1042
AccII CGCG 1 cut(s) 158
AciI CCGC 2 cut(s) 158, 779
AclWI GGATC 6 cut(s) 45, 47, 60, 468, 1016, 1029
AcsI RAATTY 3 cut(s) 24, 213, 387
AcuI CTGAAG 3 cut(s) 610, 685, 834
AcvI CACGTG 1 cut(s) 434
AfaI GTAC 4 cut(s) 182, 273, 889, 922
AfiI CCNNNNNNNGG 1 cut(s) 177
AflIII ACRYGT 1 cut(s) 871
AhdI GACNNNNNGTC 1 cut(s) 265
AjiI CACGTC 1 cut(s) 668
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 5 cut(s) 80, 647, 695, 726, 827
AluI AGCT 5 cut(s) 80, 647, 695, 726, 827
Alw26I GTCTC 3 cut(s) 407, 699, 746
AlwI GGATC 6 cut(s) 45, 47, 60, 468, 1016, 1029
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 2 cut(s) 167, 827
ApoI RAATTY 3 cut(s) 24, 213, 387
AspLEI GCGC 1 cut(s) 600
AspS9I GGNCC 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 172
AvaII GGWCC 1 cut(s) 44
AxyI CCTNAGG 1 cut(s) 48
BamHI GGATCC 2 cut(s) 52, 1021
BbrPI CACGTG 1 cut(s) 434
BbsI GAAGAC 2 cut(s) 691, 1000
BbvI GCAGC 2 cut(s) 179, 814
BccI CCATC 2 cut(s) 318, 587
BceAI ACGGC 1 cut(s) 432
BciT130I CCWGG 1 cut(s) 35
BciVI GTATCC 1 cut(s) 843
BcoDI GTCTC 3 cut(s) 407, 699, 746
BfaI CTAG 6 cut(s) 41, 422, 786, 885, 918, 1026
BfmI CTRYAG 2 cut(s) 613, 658
BfoI RGCGCY 1 cut(s) 601
BfuAI ACCTGC 1 cut(s) 340
BfuI GTATCC 1 cut(s) 843
BisI GCNGC 2 cut(s) 168, 828
BlsI GCNGC 2 cut(s) 169, 829
BmcAI AGTACT 1 cut(s) 889
Bme1390I CCNGG 1 cut(s) 35
Bme18I GGWCC 1 cut(s) 44
BmeRI GACNNNNNGTC 1 cut(s) 265
BmgBI CACGTC 1 cut(s) 668
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 3 cut(s) 54, 330, 1023
BmrFI CCNGG 1 cut(s) 35
BmrI ACTGGG 1 cut(s) 193
BmsI GCATC 3 cut(s) 211, 528, 854
BmuI ACTGGG 1 cut(s) 193
BpiI GAAGAC 2 cut(s) 691, 1000
BpuEI CTTGAG 1 cut(s) 973
BsaAI YACGTR 1 cut(s) 434
BsaJI CCNNGG 3 cut(s) 176, 205, 287
BsaXI ACNNNNNCTCC 4 cut(s) 558, 588, 766, 796
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 2 cut(s) 188, 308
Bse21I CCTNAGG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 35
BseDI CCNNGG 3 cut(s) 176, 205, 287
BseGI GGATG 3 cut(s) 25, 226, 796
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMII CTCAG 4 cut(s) 39, 101, 547, 616
BseNI ACTGG 2 cut(s) 188, 308
BseXI GCAGC 2 cut(s) 179, 814
BsgI GTGCAG 1 cut(s) 395
Bsh1236I CGCG 1 cut(s) 158
BshFI GGCC 1 cut(s) 33
BslFI GGGAC 2 cut(s) 639, 654
BslI CCNNNNNNNGG 1 cut(s) 177
BsmAI GTCTC 3 cut(s) 407, 699, 746
BsmBI CGTCTC 1 cut(s) 407
BsmFI GGGAC 2 cut(s) 639, 654
BsnI GGCC 1 cut(s) 33
Bsp143I GATC 5 cut(s) 37, 52, 364, 460, 1021
Bsp19I CCATGG 2 cut(s) 205, 287
BspACI CCGC 2 cut(s) 158, 779
BspANI GGCC 1 cut(s) 33
BspCNI CTCAG 4 cut(s) 40, 102, 546, 615
BspFNI CGCG 1 cut(s) 158
BspHI TCATGA 2 cut(s) 466, 952
BspLI GGNNCC 3 cut(s) 54, 330, 1023
BspMI ACCTGC 1 cut(s) 340
BspPI GGATC 6 cut(s) 45, 47, 60, 468, 1016, 1029
BsrI ACTGG 2 cut(s) 188, 308
BssECI CCNNGG 3 cut(s) 176, 205, 287
BssMI GATC 5 cut(s) 37, 52, 364, 460, 1021
BssT1I CCWWGG 2 cut(s) 205, 287
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 3 cut(s) 196, 710, 1049
Bst6I CTCTTC 6 cut(s) 68, 90, 248, 274, 405, 1003
BstBAI YACGTR 1 cut(s) 434
BstDEI CTNAG 5 cut(s) 48, 110, 439, 533, 602
BstDSI CCRYGG 2 cut(s) 205, 287
BstEII GGTNACC 1 cut(s) 574
BstF5I GGATG 3 cut(s) 25, 226, 796
BstFNI CGCG 1 cut(s) 158
BstH2I RGCGCY 1 cut(s) 601
BstHHI GCGC 1 cut(s) 600
BstKTI GATC 5 cut(s) 40, 55, 367, 463, 1024
BstMAI GTCTC 3 cut(s) 407, 699, 746
BstMBI GATC 5 cut(s) 37, 52, 364, 460, 1021
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 1 cut(s) 35
BstNSI RCATGY 2 cut(s) 203, 875
BstPI GGTNACC 1 cut(s) 574
BstSCI CCNGG 1 cut(s) 33
BstSFI CTRYAG 2 cut(s) 613, 658
BstUI CGCG 1 cut(s) 158
BstV1I GCAGC 2 cut(s) 179, 814
BstV2I GAAGAC 2 cut(s) 691, 1000
BstX2I RGATCY 3 cut(s) 37, 52, 1021
BstYI RGATCY 3 cut(s) 37, 52, 1021
Bsu36I CCTNAGG 1 cut(s) 48
BsuI GTATCC 1 cut(s) 843
BsuRI GGCC 1 cut(s) 33
BtgI CCRYGG 2 cut(s) 205, 287
BtrI CACGTC 1 cut(s) 668
BtsCI GGATG 3 cut(s) 25, 226, 796
BtsIMutI CAGTG 3 cut(s) 715, 803, 1054
BveI ACCTGC 1 cut(s) 340
CciI TCATGA 2 cut(s) 466, 952
CfoI GCGC 1 cut(s) 600
Cfr13I GGNCC 1 cut(s) 44
CseI GACGC 1 cut(s) 479
Csp6I GTAC 4 cut(s) 181, 272, 888, 921
CviAII CATG 8 cut(s) 74, 200, 206, 288, 454, 467, 872, 953
CviQI GTAC 4 cut(s) 181, 272, 888, 921
DdeI CTNAG 5 cut(s) 48, 110, 439, 533, 602
DpnI GATC 5 cut(s) 39, 54, 366, 462, 1023
DpnII GATC 5 cut(s) 37, 52, 364, 460, 1021
DriI GACNNNNNGTC 1 cut(s) 265
Eam1104I CTCTTC 6 cut(s) 68, 90, 248, 274, 405, 1003
Eam1105I GACNNNNNGTC 1 cut(s) 265
EarI CTCTTC 6 cut(s) 68, 90, 248, 274, 405, 1003
Eco130I CCWWGG 2 cut(s) 205, 287
Eco147I AGGCCT 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 44
Eco57I CTGAAG 3 cut(s) 610, 685, 834
Eco72I CACGTG 1 cut(s) 434
Eco81I CCTNAGG 1 cut(s) 48
Eco91I GGTNACC 1 cut(s) 574
EcoO109I RGGNCCY 1 cut(s) 44
EcoO65I GGTNACC 1 cut(s) 574
EcoRI GAATTC 2 cut(s) 213, 387
EcoRII CCWGG 1 cut(s) 33
EcoT14I CCWWGG 2 cut(s) 205, 287
EcoT22I ATGCAT 1 cut(s) 847
ErhI CCWWGG 2 cut(s) 205, 287
Esp3I CGTCTC 1 cut(s) 407
FaeI CATG 8 cut(s) 77, 203, 209, 291, 457, 470, 875, 956
FaqI GGGAC 2 cut(s) 639, 654
FatI CATG 8 cut(s) 73, 199, 205, 287, 453, 466, 871, 952
FblI GTMKAC 1 cut(s) 1042
Fnu4HI GCNGC 2 cut(s) 168, 828
FokI GGATG 3 cut(s) 32, 233, 783
Fsp4HI GCNGC 2 cut(s) 168, 828
FspBI CTAG 6 cut(s) 41, 422, 786, 885, 918, 1026
GlaI GCGC 1 cut(s) 599
GluI GCNGC 2 cut(s) 168, 828
HaeII RGCGCY 1 cut(s) 601
HaeIII GGCC 1 cut(s) 33
HgaI GACGC 1 cut(s) 479
HhaI GCGC 1 cut(s) 600
Hin1II CATG 8 cut(s) 77, 203, 209, 291, 457, 470, 875, 956
Hin6I GCGC 1 cut(s) 598
HinP1I GCGC 1 cut(s) 598
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HindIII AAGCTT 2 cut(s) 78, 724
HinfI GANTC 9 cut(s) 141, 537, 549, 560, 609, 808, 881, 966, 1069
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 3 cut(s) 259, 633, 1043
Hpy188I TCNGA 6 cut(s) 500, 536, 584, 605, 704, 1074
Hpy188III TCNNGA 9 cut(s) 47, 218, 422, 467, 564, 812, 953, 990, 1056
Hpy8I GTNNAC 3 cut(s) 259, 633, 1043
HpyCH4III ACNGT 3 cut(s) 196, 710, 1049
HpyCH4IV ACGT 2 cut(s) 433, 667
HpyCH4V TGCA 8 cut(s) 122, 167, 199, 224, 265, 376, 845, 893
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 5 cut(s) 48, 110, 439, 533, 602
HpySE526I ACGT 2 cut(s) 433, 667
Hsp92II CATG 8 cut(s) 77, 203, 209, 291, 457, 470, 875, 956
HspAI GCGC 1 cut(s) 598
Kzo9I GATC 5 cut(s) 37, 52, 364, 460, 1021
LmnI GCTCC 2 cut(s) 340, 772
Lsp1109I GCAGC 2 cut(s) 179, 814
LweI GCATC 3 cut(s) 211, 528, 854
MaeI CTAG 6 cut(s) 41, 422, 786, 885, 918, 1026
MaeII ACGT 2 cut(s) 433, 667
MaeIII GTNAC 4 cut(s) 352, 434, 574, 772
MalI GATC 5 cut(s) 39, 54, 366, 462, 1023
MboI GATC 5 cut(s) 37, 52, 364, 460, 1021
MflI RGATCY 3 cut(s) 37, 52, 1021
MluCI AATT 9 cut(s) 11, 24, 117, 213, 236, 387, 486, 789, 818
MlyI GAGTC 3 cut(s) 150, 975, 1078
MmeI TCCRAC 3 cut(s) 568, 856, 953
Mph1103I ATGCAT 1 cut(s) 847
MseI TTAA 1 cut(s) 345
MslI CAYNNNNRTG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 35
MvaI CCWGG 1 cut(s) 35
MvnI CGCG 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 164
NcoI CCATGG 2 cut(s) 205, 287
NdeII GATC 5 cut(s) 37, 52, 364, 460, 1021
NlaIII CATG 8 cut(s) 77, 203, 209, 291, 457, 470, 875, 956
NlaIV GGNNCC 3 cut(s) 54, 330, 1023
NmuCI GTSAC 2 cut(s) 434, 772
NsiI ATGCAT 1 cut(s) 847
NspI RCATGY 2 cut(s) 203, 875
PagI TCATGA 2 cut(s) 466, 952
PceI AGGCCT 1 cut(s) 33
PciI ACATGT 1 cut(s) 871
PfeI GAWTC 6 cut(s) 537, 549, 560, 609, 808, 881
PflFI GACNNNGTC 1 cut(s) 666
PkrI GCNGC 2 cut(s) 169, 829
PleI GAGTC 3 cut(s) 149, 974, 1077
PmaCI CACGTG 1 cut(s) 434
PmlI CACGTG 1 cut(s) 434
PpsI GAGTC 3 cut(s) 149, 974, 1077
Ppu21I YACGTR 1 cut(s) 434
PpuMI RGGWCCY 1 cut(s) 44
PscI ACATGT 1 cut(s) 871
Psp5II RGGWCCY 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 33
PspCI CACGTG 1 cut(s) 434
PspEI GGTNACC 1 cut(s) 574
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 3 cut(s) 54, 330, 1023
PspPI GGNCC 1 cut(s) 44
PspPPI RGGWCCY 1 cut(s) 44
PsuI RGATCY 3 cut(s) 37, 52, 1021
PsyI GACNNNGTC 1 cut(s) 666
RsaI GTAC 4 cut(s) 182, 273, 889, 922
RsaNI GTAC 4 cut(s) 181, 272, 888, 921
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 2 cut(s) 168, 828
Sau3AI GATC 5 cut(s) 37, 52, 364, 460, 1021
Sau96I GGNCC 1 cut(s) 44
ScaI AGTACT 1 cut(s) 889
SchI GAGTC 3 cut(s) 150, 975, 1078
ScrFI CCNGG 1 cut(s) 35
SfaNI GCATC 3 cut(s) 211, 528, 854
SfcI CTRYAG 2 cut(s) 613, 658
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 1 cut(s) 988
SmoI CTYRAG 1 cut(s) 988
Sse9I AATT 9 cut(s) 11, 24, 117, 213, 236, 387, 486, 789, 818
SseBI AGGCCT 1 cut(s) 33
SsiI CCGC 2 cut(s) 158, 779
SspMI CTAG 6 cut(s) 41, 422, 786, 885, 918, 1026
StuI AGGCCT 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 33
StyI CCWWGG 2 cut(s) 205, 287
TaaI ACNGT 3 cut(s) 196, 710, 1049
TaiI ACGT 2 cut(s) 436, 670
TaqI TCGA 2 cut(s) 106, 911
TaqII GACCGA 1 cut(s) 968
TasI AATT 9 cut(s) 11, 24, 117, 213, 236, 387, 486, 789, 818
TatI WGTACW 2 cut(s) 271, 887
TfiI GAWTC 6 cut(s) 537, 549, 560, 609, 808, 881
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 3 cut(s) 715, 810, 1054
TseFI GTSAC 2 cut(s) 434, 772
TseI GCWGC 2 cut(s) 167, 827
Tsp45I GTSAC 2 cut(s) 434, 772
TspDTI ATGAA 7 cut(s) 24, 36, 55, 90, 267, 704, 747
TspGWI ACGGA 1 cut(s) 764
TspRI CASTG 3 cut(s) 715, 810, 1054
Tth111I GACNNNGTC 1 cut(s) 666
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 3 cut(s) 24, 213, 387
XbaI TCTAGA 1 cut(s) 421
XceI RCATGY 2 cut(s) 203, 875
XmiI GTMKAC 1 cut(s) 1042
XspI CTAG 6 cut(s) 41, 422, 786, 885, 918, 1026
ZrmI AGTACT 1 cut(s) 889
Zsp2I ATGCAT 1 cut(s) 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.