AT1G48940

early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001969
Physical Location & Seq
Reverse (-)
18105808 .. 18106455
648 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48940.1

Sequence Viewer

Length: 534 bp
ATGGGTGGACAAAAGATTGTTCTGCTTTCGATCTTCGTATGTTTTTACGTGTTTTCACTTGTGTCATGTACTGAATTTGAAGCTGGAGGAGAAAATGGTTGGATCATTCCACAATCTAGTAACCAAAGTGACATCTTTAACCAATGGGCTTCCAAGAACCGGTTTAAAGTTGGCGACACTATCCGTTTCAAGTACAAGAAAGACTCTGTTTTGGTGGTAACAGAAGACGAATACAAGAAATGTCAGACGACCAAACCGGAACTTTACTCCAACCACGATGATACGGTTTTCAAATTGGACCGTCCCGGTTTGTTTTATTTCATTAGTGGTGTCTCAGGCCACTGTGAACAAGGTCAGAAAATGATTATTAAAGTCATGGAGGTGGAATCTACGCCGCAATCTCCTCCACCTTCCTCGTCTCTACCCGCTTCAGCTCACAAGAAAAACCACGCCGTGAGGAAAACGAGTCGGTTCTTAGGTGCCGGTTTAGTTACAATTTCGATTCTGGTTATTACGGTTTTTAGTCTTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

177

Amino Acids

19.75

Weight (kDa)

8.86

Isoelectric Point (pI)

40.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 41 - 119 2.9e-20 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 479
AciI CCGC 2 cut(s) 395, 426
AclWI GGATC 1 cut(s) 110
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 414
AdeI CACNNNGTG 1 cut(s) 454
AfaI GTAC 2 cut(s) 70, 194
AfiI CCNNNNNNNGG 1 cut(s) 159
AflIII ACRYGT 1 cut(s) 48
AgeI ACCGGT 1 cut(s) 159
AgsI TTSAA 3 cut(s) 80, 190, 292
AluBI AGCT 2 cut(s) 83, 434
AluI AGCT 2 cut(s) 83, 434
Alw26I GTCTC 2 cut(s) 337, 423
AlwI GGATC 1 cut(s) 110
AoxI GGCC 1 cut(s) 337
ApoI RAATTY 1 cut(s) 74
AsiGI ACCGGT 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 298
AsuC2I CCSGG 1 cut(s) 306
AvaII GGWCC 1 cut(s) 298
BanI GGYRCC 1 cut(s) 479
BbsI GAAGAC 1 cut(s) 231
BceAI ACGGC 1 cut(s) 437
BcnI CCSGG 1 cut(s) 306
BcoDI GTCTC 2 cut(s) 337, 423
BfaI CTAG 1 cut(s) 117
BisI GCNGC 1 cut(s) 395
BlsI GCNGC 1 cut(s) 396
Bme1390I CCNGG 1 cut(s) 306
Bme18I GGWCC 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 298
BmiI GGNNCC 1 cut(s) 481
BmrFI CCNGG 1 cut(s) 306
BpiI GAAGAC 1 cut(s) 231
BpmI CTGGAG 1 cut(s) 105
BpuMI CCSGG 1 cut(s) 306
BsaAI YACGTR 1 cut(s) 49
BsaWI WCCGGW 2 cut(s) 159, 256
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse118I RCCGGY 2 cut(s) 159, 482
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 348
BseRI GAGGAG 2 cut(s) 102, 393
BshFI GGCC 1 cut(s) 339
BshNI GGYRCC 1 cut(s) 479
BshTI ACCGGT 1 cut(s) 159
BsiSI CCGG 4 cut(s) 160, 257, 306, 483
BslFI GGGAC 1 cut(s) 288
BslI CCNNNNNNNGG 1 cut(s) 159
BsmAI GTCTC 2 cut(s) 337, 423
BsmBI CGTCTC 1 cut(s) 423
BsmFI GGGAC 1 cut(s) 288
BsnI GGCC 1 cut(s) 339
Bsp143I GATC 2 cut(s) 30, 102
BspACI CCGC 2 cut(s) 395, 426
BspANI GGCC 1 cut(s) 339
BspCNI CTCAG 1 cut(s) 347
BspLI GGNNCC 1 cut(s) 481
BspPI GGATC 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 479
BsrFI RCCGGY 2 cut(s) 159, 482
BssAI RCCGGY 2 cut(s) 159, 482
BssMI GATC 2 cut(s) 30, 102
Bst4CI ACNGT 4 cut(s) 286, 302, 344, 517
BstBAI YACGTR 1 cut(s) 49
BstDEI CTNAG 2 cut(s) 334, 475
BstKTI GATC 2 cut(s) 33, 105
BstMAI GTCTC 2 cut(s) 337, 423
BstMBI GATC 2 cut(s) 30, 102
BstSCI CCNGG 1 cut(s) 304
BstV2I GAAGAC 1 cut(s) 231
BsuRI GGCC 1 cut(s) 339
BtsIMutI CAGTG 1 cut(s) 340
Cfr10I RCCGGY 2 cut(s) 159, 482
Cfr13I GGNCC 1 cut(s) 298
Csp6I GTAC 2 cut(s) 69, 193
CspAI ACCGGT 1 cut(s) 159
CviAII CATG 2 cut(s) 66, 376
CviJI RGCY 4 cut(s) 83, 149, 339, 434
CviKI_1 RGCY 4 cut(s) 83, 149, 339, 434
CviQI GTAC 2 cut(s) 69, 193
DdeI CTNAG 2 cut(s) 334, 475
DpnI GATC 2 cut(s) 32, 104
DpnII GATC 2 cut(s) 30, 102
DraI TTTAAA 1 cut(s) 166
DraIII CACNNNGTG 1 cut(s) 454
Eco47I GGWCC 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 414
Esp3I CGTCTC 1 cut(s) 423
FaeI CATG 2 cut(s) 69, 379
FaiI YATR 3 cut(s) 40, 67, 377
FaqI GGGAC 1 cut(s) 288
FatI CATG 2 cut(s) 65, 375
FauI CCCGC 1 cut(s) 433
Fnu4HI GCNGC 1 cut(s) 395
Fsp4HI GCNGC 1 cut(s) 395
FspBI CTAG 1 cut(s) 117
GluI GCNGC 1 cut(s) 395
GsuI CTGGAG 1 cut(s) 105
HaeIII GGCC 1 cut(s) 339
HapII CCGG 4 cut(s) 160, 257, 306, 483
Hin1II CATG 2 cut(s) 69, 379
HinfI GANTC 4 cut(s) 203, 386, 466, 502
HpaII CCGG 4 cut(s) 160, 257, 306, 483
Hpy166II GTNNAC 2 cut(s) 8, 347
Hpy188I TCNGA 2 cut(s) 246, 357
Hpy8I GTNNAC 2 cut(s) 8, 347
HpyAV CCTTC 1 cut(s) 420
HpyCH4III ACNGT 4 cut(s) 286, 302, 344, 517
HpyCH4IV ACGT 1 cut(s) 48
HpyF3I CTNAG 2 cut(s) 334, 475
HpySE526I ACGT 1 cut(s) 48
Hsp92II CATG 2 cut(s) 69, 379
Kzo9I GATC 2 cut(s) 30, 102
LpnPI CCDG 7 cut(s) 69, 173, 270, 319, 321, 491, 496
MaeI CTAG 1 cut(s) 117
MaeII ACGT 1 cut(s) 48
MaeIII GTNAC 4 cut(s) 119, 128, 217, 490
MalI GATC 2 cut(s) 32, 104
MboI GATC 2 cut(s) 30, 102
MboII GAAGA 2 cut(s) 25, 236
MluCI AATT 3 cut(s) 74, 293, 495
MlyI GAGTC 2 cut(s) 197, 475
MmeI TCCRAC 2 cut(s) 80, 294
MnlI CCTC 5 cut(s) 80, 373, 414, 424, 450
MseI TTAA 3 cut(s) 138, 165, 369
MslI CAYNNNNRTG 1 cut(s) 380
MspI CCGG 4 cut(s) 160, 257, 306, 483
MspR9I CCNGG 1 cut(s) 306
NciI CCSGG 1 cut(s) 306
NdeII GATC 2 cut(s) 30, 102
NlaIII CATG 2 cut(s) 69, 379
NlaIV GGNNCC 1 cut(s) 481
NmuCI GTSAC 1 cut(s) 128
PfeI GAWTC 2 cut(s) 386, 502
PinAI ACCGGT 1 cut(s) 159
PkrI GCNGC 1 cut(s) 396
PleI GAGTC 2 cut(s) 197, 474
PpsI GAGTC 2 cut(s) 197, 474
Ppu21I YACGTR 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 481
PspPI GGNCC 1 cut(s) 298
RsaI GTAC 2 cut(s) 70, 194
RsaNI GTAC 2 cut(s) 69, 193
RseI CAYNNNNRTG 1 cut(s) 380
SaqAI TTAA 3 cut(s) 138, 165, 369
SatI GCNGC 1 cut(s) 395
Sau3AI GATC 2 cut(s) 30, 102
Sau96I GGNCC 1 cut(s) 298
SchI GAGTC 2 cut(s) 197, 475
ScrFI CCNGG 1 cut(s) 306
SetI ASST 7 cut(s) 51, 85, 355, 384, 412, 436, 481
SinI GGWCC 1 cut(s) 298
SmiMI CAYNNNNRTG 1 cut(s) 380
Sse9I AATT 3 cut(s) 74, 293, 495
SsiI CCGC 2 cut(s) 395, 426
SspMI CTAG 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 304
TaaI ACNGT 4 cut(s) 286, 302, 344, 517
TaiI ACGT 1 cut(s) 51
TaqI TCGA 2 cut(s) 29, 500
TasI AATT 3 cut(s) 74, 293, 495
TatI WGTACW 2 cut(s) 68, 192
TauI GCSGC 1 cut(s) 397
TfiI GAWTC 2 cut(s) 386, 502
Tru1I TTAA 3 cut(s) 138, 165, 369
Tru9I TTAA 3 cut(s) 138, 165, 369
TscAI CASTG 1 cut(s) 347
TseFI GTSAC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 310
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 298
XapI RAATTY 1 cut(s) 74
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.