Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001969

Physical Location & Seq

Genomic Coordinates Forward (+)

24797952 .. 24798251

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G262600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGTGGTGACCAAGGCCGATTACGAAAAATGCCATTCTGCTCATCCCATCTTCTTCTCCAACAATGGTGTGACCGTGTTCACATTGGACCGGCCTGGTTTGTTCTATTTCATTAGTGGGGTTTCCGGGCACTGCGAGAGAGGCCAGAAGATGATCATCAAGGTCTTGGAACCAGCAAGCCCACCTCAATCTGCTGACCAGAACGAGCAGAAGAATGATGCTGCAGTTGCAATGGCCGCCATCACTTCTGCAACACTCATGTCCTGCATTATGTCATTTGTGGGGGTCCTTTTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

100

Amino Acids

10.76

Weight (kDa)

6.24

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48940 AT3G18590
fragaria_vesca	FvH4_5g12850 FvH4_5g12860 FvH4_5g16790
malus_domestica	MD06G1209600.v1.1 MD14G1220300.v1.1 MD14G1231000.v1.1
prunus_persica	Prupe.3G188300_v2.0.a1 Prupe.3G262600_v2.0.a1 Prupe.5G214900_v2.0.a1 Prupe.5G214900_v2.0.a1 Prupe.5G215500_v2.0.a1 Prupe.5G215600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0179281 RchiOBHm_Chr7g0184371 RchiOBHm_Chr7g0184381
rosa_laevigata	RLG00000004980 RLG00000004981 RLG00000005366
rosa_multiflora	Rmu_sc0001557.1_g000021 Rmu_sc0008980.1_g000004
rosa_roxburghii	Rroxscaffold_3G00269680
rosa_rugosa	Rorug06G0423200
rosa_samantha	Rh1BG431000 Rh1DG463500 Rh2AG269500 Rh2DG277300 Rh6AG308100 Rh7AG022400 Rh7AG080500 Rh7AG080600 Rh7BG022300 Rh7BG066600 Rh7BG066700 Rh7CG023600 Rh7CG066900 Rh7CG067000 Rh7DG022900 Rh7DG066600 Rh7DG066700
rosa_wichuraiana	Rw6G026630 Rw7G001840 Rw7G005470 Rw7G005480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	237
AcoI	YGGCCR	1 cut(s)	234
AjnI	CCWGG	1 cut(s)	94
AoxI	GGCC	4 cut(s)	15, 92, 142, 234
ApeKI	GCWGC	1 cut(s)	221
AspS9I	GGNCC	2 cut(s)	88, 286
AsuC2I	CCSGG	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	19
AvaII	GGWCC	2 cut(s)	88, 286
BaeGI	GKGCMC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	2 cut(s)	56, 248
BciT130I	CCWGG	1 cut(s)	96
BclI	TGATCA	1 cut(s)	153
BcnI	CCSGG	1 cut(s)	127
BfmI	CTRYAG	1 cut(s)	222
BisI	GCNGC	2 cut(s)	222, 237
BlsI	GCNGC	2 cut(s)	223, 238
Bme1390I	CCNGG	2 cut(s)	96, 127
Bme18I	GGWCC	2 cut(s)	88, 286
BmgT120I	GGNCC	2 cut(s)	88, 286
BmiI	GGNNCC	2 cut(s)	171, 287
BmrFI	CCNGG	2 cut(s)	96, 127
BmsI	GCATC	1 cut(s)	208
BpuMI	CCSGG	1 cut(s)	127
BsaBI	GATNNNNATC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	12
Bse118I	RCCGGY	1 cut(s)	90
Bse3DI	GCAATG	1 cut(s)	237
Bse8I	GATNNNNATC	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	43
BseJI	GATNNNNATC	1 cut(s)	155
BseMI	GCAATG	1 cut(s)	237
BseSI	GKGCMC	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	208
BshFI	GGCC	4 cut(s)	17, 94, 144, 236
BsiSI	CCGG	2 cut(s)	91, 126
BsnI	GGCC	4 cut(s)	17, 94, 144, 236
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	4 cut(s)	17, 94, 144, 236
BspLI	GGNNCC	2 cut(s)	171, 287
BspMAI	CTGCAG	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	90
BssAI	RCCGGY	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	178
BstEII	GGTNACC	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 227, 236
BstNI	CCWGG	1 cut(s)	96
BstPI	GGTNACC	1 cut(s)	7
BstSCI	CCNGG	2 cut(s)	94, 125
BstSFI	CTRYAG	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	208
BsuRI	GGCC	4 cut(s)	17, 94, 144, 236
BtsCI	GGATG	1 cut(s)	43
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	90
Cfr13I	GGNCC	2 cut(s)	88, 286
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	5 cut(s)	17, 94, 144, 180, 236
CviKI_1	RGCY	5 cut(s)	17, 94, 144, 180, 236
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
EaeI	YGGCCR	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	12
Eco47I	GGWCC	2 cut(s)	88, 286
Eco91I	GGTNACC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	286
EcoO65I	GGTNACC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	1 cut(s)	262
FaiI	YATR	2 cut(s)	260, 272
FatI	CATG	1 cut(s)	258
FbaI	TGATCA	1 cut(s)	153
Fnu4HI	GCNGC	2 cut(s)	222, 237
FokI	GGATG	1 cut(s)	30
Fsp4HI	GCNGC	2 cut(s)	222, 237
GluI	GCNGC	2 cut(s)	222, 237
HaeIII	GGCC	4 cut(s)	17, 94, 144, 236
HapII	CCGG	2 cut(s)	91, 126
Hin1II	CATG	1 cut(s)	262
HpaII	CCGG	2 cut(s)	91, 126
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	81
Hpy8I	GTNNAC	1 cut(s)	81
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	4 cut(s)	224, 230, 251, 267
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 227, 236
Hsp92II	CATG	1 cut(s)	262
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	1 cut(s)	153
LpnPI	CCDG	8 cut(s)	81, 104, 108, 139, 158, 186, 212, 277
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	208
MaeIII	GTNAC	2 cut(s)	7, 70
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	5 cut(s)	43, 46, 160, 223, 286
MhlI	GDGCHC	1 cut(s)	132
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	2 cut(s)	134, 195
MspI	CCGG	2 cut(s)	91, 126
MspR9I	CCNGG	2 cut(s)	96, 127
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	3 cut(s)	141, 227, 236
NciI	CCSGG	1 cut(s)	127
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	2 cut(s)	171, 287
NmuCI	GTSAC	2 cut(s)	7, 70
PkrI	GCNGC	2 cut(s)	223, 238
PpuMI	RGGWCCY	1 cut(s)	286
Psp5II	RGGWCCY	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	94
PspEI	GGTNACC	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	2 cut(s)	171, 287
PspPI	GGNCC	2 cut(s)	88, 286
PspPPI	RGGWCCY	1 cut(s)	286
PstI	CTGCAG	1 cut(s)	226
SatI	GCNGC	2 cut(s)	222, 237
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	2 cut(s)	88, 286
ScrFI	CCNGG	2 cut(s)	96, 127
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	2 cut(s)	165, 187
SfaNI	GCATC	1 cut(s)	208
SfcI	CTRYAG	1 cut(s)	222
SinI	GGWCC	2 cut(s)	88, 286
SsiI	CCGC	1 cut(s)	237
StyD4I	CCNGG	2 cut(s)	94, 125
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	76
TauI	GCSGC	1 cut(s)	239
TscAI	CASTG	1 cut(s)	137
TseFI	GTSAC	2 cut(s)	7, 70
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	2 cut(s)	7, 70
TspDTI	ATGAA	1 cut(s)	100
TspRI	CASTG	1 cut(s)	137
VpaK11BI	GGWCC	2 cut(s)	88, 286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.