Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001969

Physical Location & Seq

Genomic Coordinates Reverse (-)

56154669 .. 56155551

Gene Structure 883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0423200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGATACACTGAGAAACTTATGGGCTATCTTGTTTATTTCGATAGCCATTGTTGGTTTGCAAGGTGATGGTAAGGTGGAGAATGTTACTGCTAATAGTGAAGTAGGCAATGCTAGTTCTCTAGCTCTTGCTTTTGATCAAGGCGACAAAACAGAAGCTAGAAACAAGAGCGCTTCTTACACTACTGAAGTTGTTATCAACAGCAAAAACAAACACTCTTGGATGAATAGAGGAAGAGGAGGTGGCGGCGGTGGTGGAGGAGGGGGAGGAGGAGGTGGCCGTGGCCGTGGTAGTGGGGGTGGCGGAGGCGGTGGAGGAGGAGGCTACTCGTGGAGTTGGGGTGGTGGAGGTGGAGGTGGAGGTGGAGGCGGTGGGCGAGGTGGCGGTGGTGGAGGTAGTGGTTGGGGATGGGGTGGAGGAGGAGGTGGGAGTGGGTGGTGGAAGTGGGGTTGCGGAAGCCAAGGCGGCGGAAACGGAGGAGGTAAAAGGCATCATCATCGTGTGTATCGGGGGACAGGGAGGTTCAGTGAGGATCATTACAAGCTAGGAGAGTTTGCACAATGCATGCGTAAAGGGCGGTGCAAAGGGATGAGATTGGACTGCCCTCTTCACTGTGGAGGACCTTGCTACTATGACTGCCAAGATATGTGCAAGGCTCACTGTCGACGTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

224

Amino Acids

22.55

Weight (kDa)

9.68

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48940 AT3G18590
fragaria_vesca	FvH4_5g12850 FvH4_5g12860 FvH4_5g16790
malus_domestica	MD06G1209600.v1.1 MD14G1220300.v1.1 MD14G1231000.v1.1
prunus_persica	Prupe.3G188300_v2.0.a1 Prupe.3G262600_v2.0.a1 Prupe.5G214900_v2.0.a1 Prupe.5G214900_v2.0.a1 Prupe.5G215500_v2.0.a1 Prupe.5G215600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0179281 RchiOBHm_Chr7g0184371 RchiOBHm_Chr7g0184381
rosa_laevigata	RLG00000004980 RLG00000004981 RLG00000005366
rosa_multiflora	Rmu_sc0001557.1_g000021 Rmu_sc0008980.1_g000004
rosa_roxburghii	Rroxscaffold_3G00269680
rosa_rugosa	Rorug06G0423200
rosa_samantha	Rh1BG431000 Rh1DG463500 Rh2AG269500 Rh2DG277300 Rh6AG308100 Rh7AG022400 Rh7AG080500 Rh7AG080600 Rh7BG022300 Rh7BG066600 Rh7BG066700 Rh7CG023600 Rh7CG066900 Rh7CG067000 Rh7DG022900 Rh7DG066600 Rh7DG066700
rosa_wichuraiana	Rw6G026630 Rw7G001840 Rw7G005470 Rw7G005480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	670
AccI	GTMKAC	1 cut(s)	664
AclWI	GGATC	1 cut(s)	540
AcoI	YGGCCR	2 cut(s)	277, 283
AcuI	CTGAAG	1 cut(s)	207
AcyI	GRCGYC	1 cut(s)	667
AfeI	AGCGCT	1 cut(s)	172
AluBI	AGCT	3 cut(s)	125, 158, 544
AluI	AGCT	3 cut(s)	125, 158, 544
AlwI	GGATC	1 cut(s)	540
Aor51HI	AGCGCT	1 cut(s)	172
AoxI	GGCC	2 cut(s)	277, 283
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	620
AsuHPI	GGTGA	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	620
BauI	CACGAG	1 cut(s)	328
BccI	CCATC	2 cut(s)	62, 402
BceAI	ACGGC	2 cut(s)	264, 270
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BclI	TGATCA	1 cut(s)	136
BfaI	CTAG	4 cut(s)	114, 122, 159, 545
BfoI	RGCGCY	1 cut(s)	174
BglI	GCCNNNNNGGC	1 cut(s)	465
BisI	GCNGC	2 cut(s)	247, 466
BlsI	GCNGC	2 cut(s)	248, 467
Bme18I	GGWCC	1 cut(s)	620
BmgT120I	GGNCC	1 cut(s)	620
BmsI	GCATC	1 cut(s)	499
BsaHI	GRCGYC	1 cut(s)	667
BsaJI	CCNNGG	3 cut(s)	280, 286, 460
BsaXI	ACNNNNNCTCC	4 cut(s)	325, 355, 511, 541
Bse3DI	GCAATG	1 cut(s)	115
BseDI	CCNNGG	3 cut(s)	280, 286, 460
BseGI	GGATG	3 cut(s)	228, 413, 594
BseMI	GCAATG	1 cut(s)	115
BseRI	GAGGAG	9 cut(s)	252, 273, 282, 285, 330, 333, 432, 435, 492
BshFI	GGCC	2 cut(s)	279, 285
BslFI	GGGAC	1 cut(s)	526
BsmFI	GGGAC	1 cut(s)	526
BsnI	GGCC	2 cut(s)	279, 285
Bsp143I	GATC	2 cut(s)	136, 532
BspANI	GGCC	2 cut(s)	279, 285
BspPI	GGATC	1 cut(s)	540
BsrDI	GCAATG	1 cut(s)	115
BssECI	CCNNGG	3 cut(s)	280, 286, 460
BssMI	GATC	2 cut(s)	136, 532
BssNI	GRCGYC	1 cut(s)	667
BssSI	CACGAG	1 cut(s)	328
BssT1I	CCWWGG	1 cut(s)	460
Bst2BI	CACGAG	1 cut(s)	328
Bst4CI	ACNGT	2 cut(s)	614, 662
Bst6I	CTCTTC	2 cut(s)	229, 612
BstACI	GRCGYC	1 cut(s)	667
BstC8I	GCNNGC	1 cut(s)	566
BstDEI	CTNAG	1 cut(s)	11
BstDSI	CCRYGG	2 cut(s)	280, 286
BstF5I	GGATG	3 cut(s)	228, 413, 594
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	2 cut(s)	139, 535
BstMBI	GATC	2 cut(s)	136, 532
BstMWI	GCNNNNNNNGC	2 cut(s)	465, 574
BstNSI	RCATGY	1 cut(s)	568
BsuRI	GGCC	2 cut(s)	279, 285
BtgI	CCRYGG	2 cut(s)	280, 286
BtsCI	GGATG	3 cut(s)	228, 413, 594
BtsIMutI	CAGTG	4 cut(s)	8, 532, 610, 658
Cac8I	GCNNGC	1 cut(s)	566
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	620
CviAII	CATG	1 cut(s)	565
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	2 cut(s)	138, 534
DpnII	GATC	2 cut(s)	136, 532
EaeI	YGGCCR	2 cut(s)	277, 283
Eam1104I	CTCTTC	2 cut(s)	229, 612
EarI	CTCTTC	2 cut(s)	229, 612
EciI	GGCGGA	2 cut(s)	318, 483
Eco130I	CCWWGG	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	620
Eco47III	AGCGCT	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	620
EcoT14I	CCWWGG	1 cut(s)	460
EcoT22I	ATGCAT	1 cut(s)	566
ErhI	CCWWGG	1 cut(s)	460
FaeI	CATG	1 cut(s)	568
FaiI	YATR	4 cut(s)	22, 566, 633, 647
FaqI	GGGAC	1 cut(s)	526
FatI	CATG	1 cut(s)	564
FbaI	TGATCA	1 cut(s)	136
FblI	GTMKAC	1 cut(s)	664
Fnu4HI	GCNGC	2 cut(s)	247, 466
FokI	GGATG	3 cut(s)	235, 420, 601
Fsp4HI	GCNGC	2 cut(s)	247, 466
FspBI	CTAG	4 cut(s)	114, 122, 159, 545
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	2 cut(s)	247, 466
HaeII	RGCGCY	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	279, 285
HhaI	GCGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	667
Hin1II	CATG	1 cut(s)	568
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HincII	GTYRAC	1 cut(s)	665
HindII	GTYRAC	1 cut(s)	665
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	665
Hpy8I	GTNNAC	1 cut(s)	665
Hpy99I	CGWCG	2 cut(s)	669, 672
HpyCH4III	ACNGT	2 cut(s)	614, 662
HpyCH4IV	ACGT	1 cut(s)	667
HpyCH4V	TGCA	5 cut(s)	61, 557, 564, 582, 651
HpyF10VI	GCNNNNNNNGC	2 cut(s)	465, 574
HpyF3I	CTNAG	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	667
Hsp92I	GRCGYC	1 cut(s)	667
Hsp92II	CATG	1 cut(s)	568
HspAI	GCGC	1 cut(s)	171
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	136, 532
LpnPI	CCDG	1 cut(s)	501
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	4 cut(s)	114, 122, 159, 545
MaeII	ACGT	1 cut(s)	667
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	2 cut(s)	138, 534
MboI	GATC	2 cut(s)	136, 532
MboII	GAAGA	2 cut(s)	246, 599
Mph1103I	ATGCAT	1 cut(s)	566
MslI	CAYNNNNRTG	1 cut(s)	498
MwoI	GCNNNNNNNGC	2 cut(s)	465, 574
NdeII	GATC	2 cut(s)	136, 532
NlaIII	CATG	1 cut(s)	568
NsiI	ATGCAT	1 cut(s)	566
NspI	RCATGY	1 cut(s)	568
PaeI	GCATGC	1 cut(s)	568
PkrI	GCNGC	2 cut(s)	248, 467
PpuMI	RGGWCCY	1 cut(s)	620
Psp5II	RGGWCCY	1 cut(s)	620
PspPI	GGNCC	1 cut(s)	620
PspPPI	RGGWCCY	1 cut(s)	620
RseI	CAYNNNNRTG	1 cut(s)	498
SalI	GTCGAC	1 cut(s)	663
SatI	GCNGC	2 cut(s)	247, 466
Sau3AI	GATC	2 cut(s)	136, 532
Sau96I	GGNCC	1 cut(s)	620
SfaNI	GCATC	1 cut(s)	499
SinI	GGWCC	1 cut(s)	620
SmiMI	CAYNNNNRTG	1 cut(s)	498
SphI	GCATGC	1 cut(s)	568
SspMI	CTAG	4 cut(s)	114, 122, 159, 545
StyI	CCWWGG	1 cut(s)	460
TaaI	ACNGT	2 cut(s)	614, 662
TaiI	ACGT	1 cut(s)	670
TaqI	TCGA	3 cut(s)	41, 664, 670
TauI	GCSGC	2 cut(s)	249, 468
TscAI	CASTG	4 cut(s)	15, 532, 617, 665
TspDTI	ATGAA	1 cut(s)	239
TspGWI	ACGGA	1 cut(s)	489
TspRI	CASTG	4 cut(s)	15, 532, 617, 665
VpaK11BI	GGWCC	1 cut(s)	620
XceI	RCATGY	1 cut(s)	568
XmiI	GTMKAC	1 cut(s)	664
XspI	CTAG	4 cut(s)	114, 122, 159, 545
ZraI	GACGTC	1 cut(s)	668
Zsp2I	ATGCAT	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.