Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001969

Physical Location & Seq

Genomic Coordinates Reverse (-)

16923442 .. 16925571

Gene Structure 2130 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G214900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGATAATAAATAAGATGTATACGCCTCTTTTGCTGATTTGCGCAGATAGTAGTTGCCTTCAACCATTTTCTCCCACAGCAGTCAAAGCTTGGGTAATATTGTTTTGCTTTGATTTTCATGGACTTAGATTTCAACTACACCAAAGACTCGGTGCTGGTGGTGACCAAGGACTAGTCGAAAATTGCCATTCTGCTCATCCCATCTTCTTCTCCAGCAATGGTGTGACTGTGTTCACATTGGACCGGCCTGGTTTGTTCTATTTCATTAGTGGGGTTTCTGGGCGAGAGAGGCCAGAAGATGATCATCAAAGTGTTGGAACCAGCAAGCCCACCCAAATCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

115

Amino Acids

12.63

Weight (kDa)

6.48

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48940 AT3G18590
fragaria_vesca	FvH4_5g12850 FvH4_5g12860 FvH4_5g16790
malus_domestica	MD06G1209600.v1.1 MD14G1220300.v1.1 MD14G1231000.v1.1
prunus_persica	Prupe.3G188300_v2.0.a1 Prupe.3G262600_v2.0.a1 Prupe.5G214900_v2.0.a1 Prupe.5G214900_v2.0.a1 Prupe.5G215500_v2.0.a1 Prupe.5G215600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0179281 RchiOBHm_Chr7g0184371 RchiOBHm_Chr7g0184381
rosa_laevigata	RLG00000004980 RLG00000004981 RLG00000005366
rosa_multiflora	Rmu_sc0001557.1_g000021 Rmu_sc0008980.1_g000004
rosa_roxburghii	Rroxscaffold_3G00269680
rosa_rugosa	Rorug06G0423200
rosa_samantha	Rh1BG431000 Rh1DG463500 Rh2AG269500 Rh2DG277300 Rh6AG308100 Rh7AG022400 Rh7AG080500 Rh7AG080600 Rh7BG022300 Rh7BG066600 Rh7BG066700 Rh7CG023600 Rh7CG066900 Rh7CG067000 Rh7DG022900 Rh7DG066600 Rh7DG066700
rosa_wichuraiana	Rw6G026630 Rw7G001840 Rw7G005470 Rw7G005480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	20
AgsI	TTSAA	2 cut(s)	62, 134
AhlI	ACTAGT	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
AoxI	GGCC	2 cut(s)	245, 290
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	241
AsuHPI	GGTGA	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	241
BccI	CCATC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	249
BclI	TGATCA	1 cut(s)	301
BcuI	ACTAGT	1 cut(s)	172
BfaI	CTAG	1 cut(s)	173
Bme1390I	CCNGG	1 cut(s)	249
Bme18I	GGWCC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	319
BmrFI	CCNGG	1 cut(s)	249
BpmI	CTGGAG	1 cut(s)	196
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	166
Bse118I	RCCGGY	1 cut(s)	243
Bse3DI	GCAATG	1 cut(s)	223
Bse8I	GATNNNNATC	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	196
BseJI	GATNNNNATC	1 cut(s)	303
BseMI	GCAATG	1 cut(s)	223
BshFI	GGCC	2 cut(s)	247, 292
BsiSI	CCGG	1 cut(s)	244
BsnI	GGCC	2 cut(s)	247, 292
Bsp143I	GATC	1 cut(s)	301
BspANI	GGCC	2 cut(s)	247, 292
BspLI	GGNNCC	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	243
BssAI	RCCGGY	1 cut(s)	243
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	301
BssNAI	GTATAC	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	166
Bst1107I	GTATAC	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	1 cut(s)	125
BstEII	GGTNACC	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	1 cut(s)	304
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 86, 289
BstNI	CCWGG	1 cut(s)	249
BstPI	GGTNACC	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	247
BstZ17I	GTATAC	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	247, 292
BtsCI	GGATG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	326
CfoI	GCGC	1 cut(s)	44
Cfr10I	RCCGGY	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	241
CviAII	CATG	1 cut(s)	119
CviJI	RGCY	4 cut(s)	89, 247, 292, 328
CviKI_1	RGCY	4 cut(s)	89, 247, 292, 328
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	241
Eco91I	GGTNACC	1 cut(s)	161
EcoO65I	GGTNACC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	1 cut(s)	122
FaiI	YATR	2 cut(s)	21, 120
FatI	CATG	1 cut(s)	118
FbaI	TGATCA	1 cut(s)	301
FblI	GTMKAC	1 cut(s)	20
FokI	GGATG	1 cut(s)	183
FspBI	CTAG	1 cut(s)	173
FspI	TGCGCA	1 cut(s)	43
GlaI	GCGC	1 cut(s)	43
GsuI	CTGGAG	1 cut(s)	196
HaeIII	GGCC	2 cut(s)	247, 292
HapII	CCGG	1 cut(s)	244
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	1 cut(s)	122
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HindIII	AAGCTT	1 cut(s)	87
HinfI	GANTC	1 cut(s)	147
HpaII	CCGG	1 cut(s)	244
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	2 cut(s)	21, 234
Hpy8I	GTNNAC	2 cut(s)	21, 234
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 86, 289
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	1 cut(s)	122
HspAI	GCGC	1 cut(s)	42
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	301
LpnPI	CCDG	8 cut(s)	141, 226, 234, 257, 261, 264, 306, 334
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	2 cut(s)	161, 223
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	3 cut(s)	196, 199, 308
MluCI	AATT	1 cut(s)	181
MlyI	GAGTC	1 cut(s)	141
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	2 cut(s)	36, 282
MslI	CAYNNNNRTG	1 cut(s)	309
MspI	CCGG	1 cut(s)	244
MspR9I	CCNGG	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	3 cut(s)	31, 86, 289
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	1 cut(s)	122
NlaIV	GGNNCC	1 cut(s)	319
NmuCI	GTSAC	2 cut(s)	161, 223
NsbI	TGCGCA	1 cut(s)	43
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	247
PspEI	GGTNACC	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	319
PspPI	GGNCC	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	309
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	1 cut(s)	241
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	1 cut(s)	249
SetI	ASST	1 cut(s)	91
SinI	GGWCC	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	309
SpeI	ACTAGT	1 cut(s)	172
Sse9I	AATT	1 cut(s)	181
SspI	AATATT	1 cut(s)	99
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	1 cut(s)	177
TasI	AATT	1 cut(s)	181
TseFI	GTSAC	2 cut(s)	161, 223
Tsp45I	GTSAC	2 cut(s)	161, 223
TspDTI	ATGAA	2 cut(s)	107, 253
VpaK11BI	GGWCC	1 cut(s)	241
XmiI	GTMKAC	1 cut(s)	20
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.