Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008980.1

Orthogroup ID

OG0001969

Physical Location & Seq

Genomic Coordinates Forward (+)

20445 .. 21747

Gene Structure 1303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008980.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgaccaagaaacacactgaaaaggcagtggaatatgtcaaggaacggtgtaagtctccagttgctgcattccctattgtcgtctttgtaacttgtactcaatttcaagttggtgacaagagcaatggatgggaggtccccaaatcaaagagtgaccaagatatgtacaaccaatgggcctctaagaataggttcaaagttgacgacactctcaatttcaattacaagaaaaactcagactcagttatggtggtgacggaagctgagtacgaaaaatgccattccgataatcccattttcagctctaacgatggtgacttggtcttcaaattggatcgtcccggttcgttctacttcattagtgggactgccggacactgcgagaaagggcagaaaatgattgtcaaagtcttgggatcaccggctgctggaacagaaagcccaccacctgctcaatcagcaaaccagaatgcaactgaatcaccagatcatcatgatcatgatcatcatgacatgaagaacaatgcagttgcaatgcatgctgtagctgccatctcttttacaacttctgtaatgtcatttcttggggtctttttcttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

200

Amino Acids

22.24

Weight (kDa)

6.29

Isoelectric Point (pI)

36.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48940 AT3G18590
fragaria_vesca	FvH4_5g12850 FvH4_5g12860 FvH4_5g16790
malus_domestica	MD06G1209600.v1.1 MD14G1220300.v1.1 MD14G1231000.v1.1
prunus_persica	Prupe.3G188300_v2.0.a1 Prupe.3G262600_v2.0.a1 Prupe.5G214900_v2.0.a1 Prupe.5G214900_v2.0.a1 Prupe.5G215500_v2.0.a1 Prupe.5G215600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0179281 RchiOBHm_Chr7g0184371 RchiOBHm_Chr7g0184381
rosa_laevigata	RLG00000004980 RLG00000004981 RLG00000005366
rosa_multiflora	Rmu_sc0001557.1_g000021 Rmu_sc0008980.1_g000004
rosa_roxburghii	Rroxscaffold_3G00269680
rosa_rugosa	Rorug06G0423200
rosa_samantha	Rh1BG431000 Rh1DG463500 Rh2AG269500 Rh2DG277300 Rh6AG308100 Rh7AG022400 Rh7AG080500 Rh7AG080600 Rh7BG022300 Rh7BG066600 Rh7BG066700 Rh7CG023600 Rh7CG066900 Rh7CG067000 Rh7DG022900 Rh7DG066600 Rh7DG066700
rosa_wichuraiana	Rw6G026630 Rw7G001840 Rw7G005470 Rw7G005480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	457
Acc36I	ACCTGC	1 cut(s)	457
AclWI	GGATC	2 cut(s)	342, 424
AfaI	GTAC	3 cut(s)	97, 167, 269
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgsI	TTSAA	4 cut(s)	107, 196, 220, 328
AluBI	AGCT	3 cut(s)	263, 303, 548
AluI	AGCT	3 cut(s)	263, 303, 548
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	2 cut(s)	342, 424
AlwNI	CAGNNNCTG	1 cut(s)	65
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	3 cut(s)	65, 425, 548
Asp700I	GAANNNNTTC	1 cut(s)	191
AspS9I	GGNCC	2 cut(s)	136, 177
AsuC2I	CCSGG	1 cut(s)	342
AsuHPI	GGTGA	5 cut(s)	125, 265, 326, 411, 474
AvaII	GGWCC	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	316
BbvI	GCAGC	3 cut(s)	52, 412, 535
BccI	CCATC	3 cut(s)	123, 305, 560
BclI	TGATCA	2 cut(s)	496, 502
BcnI	CCSGG	1 cut(s)	342
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	1 cut(s)	601
BfmI	CTRYAG	1 cut(s)	543
BfuAI	ACCTGC	1 cut(s)	457
BisI	GCNGC	3 cut(s)	66, 426, 549
BlsI	GCNGC	3 cut(s)	67, 427, 550
Bme1390I	CCNGG	1 cut(s)	342
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	136, 177
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	342
BpiI	GAAGAC	1 cut(s)	316
BpmI	CTGGAG	1 cut(s)	42
BpuMI	CCSGG	1 cut(s)	342
BsaBI	GATNNNNATC	1 cut(s)	501
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse118I	RCCGGY	1 cut(s)	421
Bse1I	ACTGG	1 cut(s)	59
Bse3DI	GCAATG	2 cut(s)	130, 540
Bse8I	GATNNNNATC	1 cut(s)	501
BseGI	GGATG	1 cut(s)	134
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMI	GCAATG	2 cut(s)	130, 540
BseMII	CTCAG	3 cut(s)	249, 255, 255
BseNI	ACTGG	1 cut(s)	59
BseXI	GCAGC	3 cut(s)	52, 412, 535
BshFI	GGCC	1 cut(s)	179
BsiSI	CCGG	3 cut(s)	342, 372, 422
BslFI	GGGAC	3 cut(s)	122, 324, 379
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	1 cut(s)	60
BsmFI	GGGAC	3 cut(s)	122, 324, 379
BsmI	GAATGC	2 cut(s)	68, 475
BsnI	GGCC	1 cut(s)	179
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	5 cut(s)	334, 416, 487, 496, 502
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	3 cut(s)	248, 254, 256
BspHI	TCATGA	3 cut(s)	493, 499, 508
BspLI	GGNNCC	1 cut(s)	138
BspMI	ACCTGC	1 cut(s)	457
BspPI	GGATC	2 cut(s)	342, 424
BsrDI	GCAATG	2 cut(s)	130, 540
BsrFI	RCCGGY	1 cut(s)	421
BsrGI	TGTACA	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	59
BssAI	RCCGGY	1 cut(s)	421
BssMI	GATC	5 cut(s)	334, 416, 487, 496, 502
Bst4CI	ACNGT	1 cut(s)	48
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstAUI	TGTACA	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	540
BstDEI	CTNAG	4 cut(s)	183, 235, 241, 264
BstF5I	GGATG	1 cut(s)	134
BstKTI	GATC	5 cut(s)	337, 419, 490, 499, 505
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	5 cut(s)	334, 416, 487, 496, 502
BstMWI	GCNNNNNNNGC	3 cut(s)	458, 539, 548
BstNSI	RCATGY	1 cut(s)	542
BstSCI	CCNGG	1 cut(s)	340
BstSFI	CTRYAG	1 cut(s)	543
BstV1I	GCAGC	3 cut(s)	52, 412, 535
BstV2I	GAAGAC	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	134
BtsI	GCAGTG	2 cut(s)	33, 376
BtsIMutI	CAGTG	3 cut(s)	15, 33, 376
BveI	ACCTGC	1 cut(s)	457
Cac8I	GCNNGC	1 cut(s)	540
CaiI	CAGNNNCTG	1 cut(s)	65
CciI	TCATGA	3 cut(s)	493, 499, 508
Cfr10I	RCCGGY	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	136, 177
Csp6I	GTAC	3 cut(s)	96, 166, 268
CviAII	CATG	5 cut(s)	494, 500, 509, 514, 539
CviJI	RGCY	6 cut(s)	179, 263, 303, 425, 441, 548
CviKI_1	RGCY	6 cut(s)	179, 263, 303, 425, 441, 548
CviQI	GTAC	3 cut(s)	96, 166, 268
DdeI	CTNAG	4 cut(s)	183, 235, 241, 264
DpnI	GATC	5 cut(s)	336, 418, 489, 498, 504
DpnII	GATC	5 cut(s)	334, 416, 487, 496, 502
Eco47I	GGWCC	1 cut(s)	136
EcoO109I	RGGNCCY	1 cut(s)	136
EcoT22I	ATGCAT	1 cut(s)	540
FaeI	CATG	5 cut(s)	497, 503, 512, 517, 542
FaiI	YATR	8 cut(s)	36, 164, 248, 495, 501, 510, 515, 540
FaqI	GGGAC	3 cut(s)	122, 324, 379
FatI	CATG	5 cut(s)	493, 499, 508, 513, 538
FbaI	TGATCA	2 cut(s)	496, 502
Fnu4HI	GCNGC	3 cut(s)	66, 426, 549
FokI	GGATG	1 cut(s)	141
Fsp4HI	GCNGC	3 cut(s)	66, 426, 549
FspBI	CTAG	1 cut(s)	601
GluI	GCNGC	3 cut(s)	66, 426, 549
GsuI	CTGGAG	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	3 cut(s)	342, 372, 422
Hin1II	CATG	5 cut(s)	497, 503, 512, 517, 542
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	2 cut(s)	239, 479
HpaII	CCGG	3 cut(s)	342, 372, 422
HphI	GGTGA	5 cut(s)	125, 265, 326, 411, 474
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	2 cut(s)	238, 286
Hpy188III	TCNNGA	3 cut(s)	494, 500, 509
Hpy8I	GTNNAC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4V	TGCA	5 cut(s)	68, 473, 527, 533, 538
HpyF10VI	GCNNNNNNNGC	3 cut(s)	458, 539, 548
HpyF3I	CTNAG	4 cut(s)	183, 235, 241, 264
Hsp92II	CATG	5 cut(s)	497, 503, 512, 517, 542
Ksp22I	TGATCA	2 cut(s)	496, 502
Kzo9I	GATC	5 cut(s)	334, 416, 487, 496, 502
LpnPI	CCDG	8 cut(s)	72, 355, 385, 414, 435, 462, 479, 498
Lsp1109I	GCAGC	3 cut(s)	52, 412, 535
MaeI	CTAG	1 cut(s)	601
MaeIII	GTNAC	5 cut(s)	88, 113, 152, 253, 314
MalI	GATC	5 cut(s)	336, 418, 489, 498, 504
MboI	GATC	5 cut(s)	334, 416, 487, 496, 502
MboII	GAAGA	3 cut(s)	316, 529, 589
MluCI	AATT	4 cut(s)	101, 214, 220, 329
MlyI	GAGTC	1 cut(s)	233
MnlI	CCTC	2 cut(s)	127, 190
Mph1103I	ATGCAT	1 cut(s)	540
MroXI	GAANNNNTTC	1 cut(s)	191
MslI	CAYNNNNRTG	1 cut(s)	498
MspI	CCGG	3 cut(s)	342, 372, 422
MspR9I	CCNGG	1 cut(s)	342
Mva1269I	GAATGC	2 cut(s)	68, 475
MwoI	GCNNNNNNNGC	3 cut(s)	458, 539, 548
NciI	CCSGG	1 cut(s)	342
NdeII	GATC	5 cut(s)	334, 416, 487, 496, 502
NlaIII	CATG	5 cut(s)	497, 503, 512, 517, 542
NlaIV	GGNNCC	1 cut(s)	138
NmuCI	GTSAC	4 cut(s)	113, 152, 253, 314
NsiI	ATGCAT	1 cut(s)	540
NspI	RCATGY	1 cut(s)	542
PaeI	GCATGC	1 cut(s)	542
PagI	TCATGA	3 cut(s)	493, 499, 508
PaqCI	CACCTGC	1 cut(s)	457
PctI	GAATGC	2 cut(s)	68, 475
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	479
PflFI	GACNNNGTC	1 cut(s)	320
PkrI	GCNGC	3 cut(s)	67, 427, 550
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
PpuMI	RGGWCCY	1 cut(s)	136
Psp5II	RGGWCCY	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	138
PspPI	GGNCC	2 cut(s)	136, 177
PspPPI	RGGWCCY	1 cut(s)	136
PstNI	CAGNNNCTG	1 cut(s)	65
PsyI	GACNNNGTC	1 cut(s)	320
RsaI	GTAC	3 cut(s)	97, 167, 269
RsaNI	GTAC	3 cut(s)	96, 166, 268
RseI	CAYNNNNRTG	1 cut(s)	498
SatI	GCNGC	3 cut(s)	66, 426, 549
Sau3AI	GATC	5 cut(s)	334, 416, 487, 496, 502
Sau96I	GGNCC	2 cut(s)	136, 177
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	1 cut(s)	342
SetI	ASST	6 cut(s)	138, 194, 265, 305, 451, 550
SfcI	CTRYAG	1 cut(s)	543
SinI	GGWCC	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	498
SphI	GCATGC	1 cut(s)	542
Sse9I	AATT	4 cut(s)	101, 214, 220, 329
SspMI	CTAG	1 cut(s)	601
StyD4I	CCNGG	1 cut(s)	340
TaaI	ACNGT	1 cut(s)	48
TasI	AATT	4 cut(s)	101, 214, 220, 329
TatI	WGTACW	2 cut(s)	95, 165
TfiI	GAWTC	1 cut(s)	479
TscAI	CASTG	3 cut(s)	22, 33, 383
TseFI	GTSAC	4 cut(s)	113, 152, 253, 314
TseI	GCWGC	3 cut(s)	65, 425, 548
Tsp45I	GTSAC	4 cut(s)	113, 152, 253, 314
TspDTI	ATGAA	2 cut(s)	346, 530
TspGWI	ACGGA	1 cut(s)	272
TspRI	CASTG	3 cut(s)	22, 33, 383
Tth111I	GACNNNGTC	1 cut(s)	320
VpaK11BI	GGWCC	1 cut(s)	136
XceI	RCATGY	1 cut(s)	542
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	1 cut(s)	601
Zsp2I	ATGCAT	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.