Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001969

Physical Location & Seq

Genomic Coordinates Reverse (-)

16946047 .. 16947149

Gene Structure 1103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G215500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGAACCCTCCAAAGTAGTTCTCTTCTTTTTTCTTCTTTCTACCTTCCAAGTCTTGTTTGTAACTTGCACGAAATTTGAAGTTGGAGGCAAGAATGGGTGGGAGGTCCCCAAATCAAAGAATGACCAACAAATGTATAACCAATGGGCATCAGATAACAGGTTCAAGGTCGATGACACTCTCCATTTCAACTACACCAAAGACTCGGTGCTGGTGGTGACCAAGGACGAGTACGAAAAATGCCATTCTGCTCATCCCATCTTCTTCTCCAACCATGGTGTGACTGTGTTCACATTAGACCGGCCTGGTTTGTTCTATTTCATTAGTGGGGTTTCTGGGCACTGCGAGAGAGGCCAGAAGATGATCATCAAAGTGTTGGAACCAGCAAGCCCACCTCAATCTGCTGACCAGAACGAGCAGAAGAATGATGCTGCAGTTGCAATGGCTACCATCTCTTCTGCAACTCTCATGTCCTGCATTATGTCATTTGTGGGGGTCCTTTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

170

Amino Acids

19.06

Weight (kDa)

6.18

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48940 AT3G18590
fragaria_vesca	FvH4_5g12850 FvH4_5g12860 FvH4_5g16790
malus_domestica	MD06G1209600.v1.1 MD14G1220300.v1.1 MD14G1231000.v1.1
prunus_persica	Prupe.3G188300_v2.0.a1 Prupe.3G262600_v2.0.a1 Prupe.5G214900_v2.0.a1 Prupe.5G214900_v2.0.a1 Prupe.5G215500_v2.0.a1 Prupe.5G215600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0179281 RchiOBHm_Chr7g0184371 RchiOBHm_Chr7g0184381
rosa_laevigata	RLG00000004980 RLG00000004981 RLG00000005366
rosa_multiflora	Rmu_sc0001557.1_g000021 Rmu_sc0008980.1_g000004
rosa_roxburghii	Rroxscaffold_3G00269680
rosa_rugosa	Rorug06G0423200
rosa_samantha	Rh1BG431000 Rh1DG463500 Rh2AG269500 Rh2DG277300 Rh6AG308100 Rh7AG022400 Rh7AG080500 Rh7AG080600 Rh7BG022300 Rh7BG066600 Rh7BG066700 Rh7CG023600 Rh7CG066900 Rh7CG067000 Rh7DG022900 Rh7DG066600 Rh7DG066700
rosa_wichuraiana	Rw6G026630 Rw7G001840 Rw7G005470 Rw7G005480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	74
AfaI	GTAC	1 cut(s)	233
AgsI	TTSAA	3 cut(s)	80, 166, 190
AjnI	CCWGG	1 cut(s)	304
AoxI	GGCC	2 cut(s)	302, 352
ApeKI	GCWGC	1 cut(s)	431
ApoI	RAATTY	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	106, 496
AsuHPI	GGTGA	1 cut(s)	229
AvaII	GGWCC	2 cut(s)	106, 496
BaeGI	GKGCMC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	2 cut(s)	266, 458
BciT130I	CCWGG	1 cut(s)	306
BclI	TGATCA	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	432
BisI	GCNGC	1 cut(s)	432
BlsI	GCNGC	1 cut(s)	433
Bme1390I	CCNGG	1 cut(s)	306
Bme18I	GGWCC	2 cut(s)	106, 496
BmgT120I	GGNCC	2 cut(s)	106, 496
BmiI	GGNNCC	4 cut(s)	6, 108, 381, 497
BmrFI	CCNGG	1 cut(s)	306
BmsI	GCATC	2 cut(s)	158, 418
BsaBI	GATNNNNATC	1 cut(s)	365
BsaJI	CCNNGG	2 cut(s)	222, 274
Bse118I	RCCGGY	1 cut(s)	300
Bse3DI	GCAATG	1 cut(s)	447
Bse8I	GATNNNNATC	1 cut(s)	365
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	222, 274
BseGI	GGATG	1 cut(s)	253
BseJI	GATNNNNATC	1 cut(s)	365
BseMI	GCAATG	1 cut(s)	447
BseSI	GKGCMC	1 cut(s)	342
BseXI	GCAGC	1 cut(s)	418
BshFI	GGCC	2 cut(s)	304, 354
BsiSI	CCGG	1 cut(s)	301
BslFI	GGGAC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	92
BsnI	GGCC	2 cut(s)	304, 354
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	1 cut(s)	363
Bsp19I	CCATGG	1 cut(s)	274
BspANI	GGCC	2 cut(s)	304, 354
BspLI	GGNNCC	4 cut(s)	6, 108, 381, 497
BspMAI	CTGCAG	1 cut(s)	436
BsrDI	GCAATG	1 cut(s)	447
BsrFI	RCCGGY	1 cut(s)	300
BssAI	RCCGGY	1 cut(s)	300
BssECI	CCNNGG	2 cut(s)	222, 274
BssMI	GATC	1 cut(s)	363
BssT1I	CCWWGG	2 cut(s)	222, 274
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	2 cut(s)	29, 460
BstC8I	GCNNGC	1 cut(s)	388
BstDSI	CCRYGG	1 cut(s)	274
BstEII	GGTNACC	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	1 cut(s)	366
BstMBI	GATC	1 cut(s)	363
BstMWI	GCNNNNNNNGC	2 cut(s)	351, 437
BstNI	CCWGG	1 cut(s)	306
BstPI	GGTNACC	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	304
BstSFI	CTRYAG	1 cut(s)	432
BstSLI	GKGCMC	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	418
BsuRI	GGCC	2 cut(s)	304, 354
BtgI	CCRYGG	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	253
BtsI	GCAGTG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	388
Cfr10I	RCCGGY	1 cut(s)	300
Cfr13I	GGNCC	2 cut(s)	106, 496
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	2 cut(s)	275, 469
CviJI	RGCY	4 cut(s)	304, 354, 390, 446
CviKI_1	RGCY	4 cut(s)	304, 354, 390, 446
CviQI	GTAC	1 cut(s)	232
DpnI	GATC	1 cut(s)	365
DpnII	GATC	1 cut(s)	363
Eam1104I	CTCTTC	2 cut(s)	29, 460
EarI	CTCTTC	2 cut(s)	29, 460
Eco130I	CCWWGG	2 cut(s)	222, 274
Eco47I	GGWCC	2 cut(s)	106, 496
Eco91I	GGTNACC	1 cut(s)	217
EcoO109I	RGGNCCY	2 cut(s)	106, 496
EcoO65I	GGTNACC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	2 cut(s)	222, 274
ErhI	CCWWGG	2 cut(s)	222, 274
FaeI	CATG	2 cut(s)	278, 472
FaiI	YATR	4 cut(s)	138, 276, 470, 482
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	2 cut(s)	274, 468
FbaI	TGATCA	1 cut(s)	363
Fnu4HI	GCNGC	1 cut(s)	432
FokI	GGATG	1 cut(s)	240
Fsp4HI	GCNGC	1 cut(s)	432
GluI	GCNGC	1 cut(s)	432
HaeIII	GGCC	2 cut(s)	304, 354
HapII	CCGG	1 cut(s)	301
Hin1II	CATG	2 cut(s)	278, 472
HinfI	GANTC	1 cut(s)	203
HpaII	CCGG	1 cut(s)	301
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	2 cut(s)	154, 509
Hpy8I	GTNNAC	1 cut(s)	291
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	5 cut(s)	69, 434, 440, 461, 477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	351, 437
Hsp92II	CATG	2 cut(s)	278, 472
Ksp22I	TGATCA	1 cut(s)	363
Kzo9I	GATC	1 cut(s)	363
Lsp1109I	GCAGC	1 cut(s)	418
LweI	GCATC	2 cut(s)	158, 418
MaeIII	GTNAC	3 cut(s)	61, 217, 280
MalI	GATC	1 cut(s)	365
MboI	GATC	1 cut(s)	363
MboII	GAAGA	8 cut(s)	16, 26, 253, 256, 370, 433, 447, 496
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	1 cut(s)	74
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	3 cut(s)	64, 294, 357
MnlI	CCTC	5 cut(s)	19, 80, 97, 344, 405
MslI	CAYNNNNRTG	1 cut(s)	371
MspI	CCGG	1 cut(s)	301
MspR9I	CCNGG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	2 cut(s)	351, 437
NcoI	CCATGG	1 cut(s)	274
NdeII	GATC	1 cut(s)	363
NlaIII	CATG	2 cut(s)	278, 472
NlaIV	GGNNCC	4 cut(s)	6, 108, 381, 497
NmuCI	GTSAC	2 cut(s)	217, 280
PkrI	GCNGC	1 cut(s)	433
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
PpuMI	RGGWCCY	2 cut(s)	106, 496
Psp5II	RGGWCCY	2 cut(s)	106, 496
Psp6I	CCWGG	1 cut(s)	304
PspEI	GGTNACC	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	4 cut(s)	6, 108, 381, 497
PspPI	GGNCC	2 cut(s)	106, 496
PspPPI	RGGWCCY	2 cut(s)	106, 496
PstI	CTGCAG	1 cut(s)	436
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
RseI	CAYNNNNRTG	1 cut(s)	371
SatI	GCNGC	1 cut(s)	432
Sau3AI	GATC	1 cut(s)	363
Sau96I	GGNCC	2 cut(s)	106, 496
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	306
SduI	GDGCHC	1 cut(s)	342
SetI	ASST	5 cut(s)	47, 108, 164, 171, 397
SfaNI	GCATC	2 cut(s)	158, 418
SfcI	CTRYAG	1 cut(s)	432
SinI	GGWCC	2 cut(s)	106, 496
SmiMI	CAYNNNNRTG	1 cut(s)	371
Sse9I	AATT	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	304
StyI	CCWWGG	2 cut(s)	222, 274
TaaI	ACNGT	1 cut(s)	286
TaqI	TCGA	1 cut(s)	171
TasI	AATT	1 cut(s)	74
TscAI	CASTG	1 cut(s)	347
TseFI	GTSAC	2 cut(s)	217, 280
TseI	GCWGC	1 cut(s)	431
Tsp45I	GTSAC	2 cut(s)	217, 280
TspDTI	ATGAA	1 cut(s)	310
TspRI	CASTG	1 cut(s)	347
VpaK11BI	GGWCC	2 cut(s)	106, 496
XapI	RAATTY	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.