Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001969

Physical Location & Seq

Genomic Coordinates Forward (+)

20168298 .. 20168721

Gene Structure 424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G188300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGTGGTGACCAAGGACGAGTACGAAAAATGCCATTCTGCTCATCCCATCTTCTTCTCCAACAATGGTGTGACCACGTTCACATTGCACCGGCCTGGTTTGTTCTATTTCATTAGTGGGGTTTCTGGGCACTGCGAGAGAGGCCAGAAGATGATCATCAAGGTCTTGGAACCAGCAAGCCCACCTCAATCTGCTGACCAGAACGAGCAGAAGAATGATGCTGCAATTGCAATGGCCGCCATCACTTCTGCAACTCTCATGTCTTATTATGTCATTTGTGGGGCACGGATACTCCGATTTAGATCCGAAACCTCTGTCGGATATGCTATGATACGAGTCGTCAACGGATACAGTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

120

Amino Acids

13.15

Weight (kDa)

8.49

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001969)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48940 AT3G18590
fragaria_vesca	FvH4_5g12850 FvH4_5g12860 FvH4_5g16790
malus_domestica	MD06G1209600.v1.1 MD14G1220300.v1.1 MD14G1231000.v1.1
prunus_persica	Prupe.3G188300_v2.0.a1 Prupe.3G262600_v2.0.a1 Prupe.5G214900_v2.0.a1 Prupe.5G214900_v2.0.a1 Prupe.5G215500_v2.0.a1 Prupe.5G215600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0179281 RchiOBHm_Chr7g0184371 RchiOBHm_Chr7g0184381
rosa_laevigata	RLG00000004980 RLG00000004981 RLG00000005366
rosa_multiflora	Rmu_sc0001557.1_g000021 Rmu_sc0008980.1_g000004
rosa_roxburghii	Rroxscaffold_3G00269680
rosa_rugosa	Rorug06G0423200
rosa_samantha	Rh1BG431000 Rh1DG463500 Rh2AG269500 Rh2DG277300 Rh6AG308100 Rh7AG022400 Rh7AG080500 Rh7AG080600 Rh7BG022300 Rh7BG066600 Rh7BG066700 Rh7CG023600 Rh7CG066900 Rh7CG067000 Rh7DG022900 Rh7DG066600 Rh7DG066700
rosa_wichuraiana	Rw6G026630 Rw7G001840 Rw7G005470 Rw7G005480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	237
AclWI	GGATC	1 cut(s)	297
AcoI	YGGCCR	1 cut(s)	234
AfaI	GTAC	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	94
AlwI	GGATC	1 cut(s)	297
AoxI	GGCC	3 cut(s)	92, 142, 234
ApeKI	GCWGC	1 cut(s)	221
ArsI	GACNNNNNNTTYG	2 cut(s)	300, 332
AsuHPI	GGTGA	1 cut(s)	19
BaeGI	GKGCMC	2 cut(s)	132, 286
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	2 cut(s)	56, 248
BciT130I	CCWGG	1 cut(s)	96
BciVI	GTATCC	2 cut(s)	282, 341
BclI	TGATCA	1 cut(s)	153
BfuI	GTATCC	2 cut(s)	282, 341
BisI	GCNGC	2 cut(s)	222, 237
BlsI	GCNGC	2 cut(s)	223, 238
Bme1390I	CCNGG	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	208
BsaBI	GATNNNNATC	2 cut(s)	155, 301
BsaJI	CCNNGG	1 cut(s)	12
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bse118I	RCCGGY	1 cut(s)	90
Bse3DI	GCAATG	2 cut(s)	83, 237
Bse8I	GATNNNNATC	2 cut(s)	155, 301
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	43
BseJI	GATNNNNATC	2 cut(s)	155, 301
BseMI	GCAATG	2 cut(s)	83, 237
BseSI	GKGCMC	2 cut(s)	132, 286
BseXI	GCAGC	1 cut(s)	208
BshFI	GGCC	3 cut(s)	94, 144, 236
BsiSI	CCGG	1 cut(s)	91
BsnI	GGCC	3 cut(s)	94, 144, 236
Bsp1286I	GDGCHC	2 cut(s)	132, 286
Bsp143I	GATC	2 cut(s)	153, 302
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	3 cut(s)	94, 144, 236
BspLI	GGNNCC	1 cut(s)	171
BspPI	GGATC	1 cut(s)	297
BsrDI	GCAATG	2 cut(s)	83, 237
BsrFI	RCCGGY	1 cut(s)	90
BssAI	RCCGGY	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	2 cut(s)	153, 302
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	178
BstEII	GGTNACC	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	2 cut(s)	156, 305
BstMBI	GATC	2 cut(s)	153, 302
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 227, 236
BstNI	CCWGG	1 cut(s)	96
BstPI	GGTNACC	1 cut(s)	7
BstSCI	CCNGG	1 cut(s)	94
BstSLI	GKGCMC	2 cut(s)	132, 286
BstV1I	GCAGC	1 cut(s)	208
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
BsuI	GTATCC	2 cut(s)	282, 341
BsuRI	GGCC	3 cut(s)	94, 144, 236
BtsCI	GGATG	1 cut(s)	43
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	4 cut(s)	94, 144, 180, 236
CviKI_1	RGCY	4 cut(s)	94, 144, 180, 236
CviQI	GTAC	1 cut(s)	22
DpnI	GATC	2 cut(s)	155, 304
DpnII	GATC	2 cut(s)	153, 302
EaeI	YGGCCR	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	12
Eco91I	GGTNACC	1 cut(s)	7
EcoO65I	GGTNACC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	1 cut(s)	262
FaiI	YATR	4 cut(s)	260, 270, 324, 329
FatI	CATG	1 cut(s)	258
FbaI	TGATCA	1 cut(s)	153
Fnu4HI	GCNGC	2 cut(s)	222, 237
FokI	GGATG	1 cut(s)	30
Fsp4HI	GCNGC	2 cut(s)	222, 237
GluI	GCNGC	2 cut(s)	222, 237
HaeIII	GGCC	3 cut(s)	94, 144, 236
HapII	CCGG	1 cut(s)	91
Hin1II	CATG	1 cut(s)	262
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	1 cut(s)	336
HpaII	CCGG	1 cut(s)	91
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	2 cut(s)	81, 343
Hpy188I	TCNGA	3 cut(s)	296, 307, 320
Hpy8I	GTNNAC	2 cut(s)	81, 343
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	4 cut(s)	88, 224, 230, 251
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 227, 236
HpySE526I	ACGT	1 cut(s)	77
Hsp92II	CATG	1 cut(s)	262
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	2 cut(s)	153, 302
LpnPI	CCDG	7 cut(s)	81, 104, 108, 111, 158, 186, 212
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	208
MaeII	ACGT	1 cut(s)	77
MaeIII	GTNAC	2 cut(s)	7, 70
MalI	GATC	2 cut(s)	155, 304
MboI	GATC	2 cut(s)	153, 302
MboII	GAAGA	4 cut(s)	43, 46, 160, 223
MfeI	CAATTG	1 cut(s)	225
MflI	RGATCY	1 cut(s)	302
MhlI	GDGCHC	2 cut(s)	132, 286
MluCI	AATT	1 cut(s)	225
MlyI	GAGTC	1 cut(s)	345
MmeI	TCCRAC	2 cut(s)	84, 298
MnlI	CCTC	3 cut(s)	134, 195, 322
MspI	CCGG	1 cut(s)	91
MspR9I	CCNGG	1 cut(s)	96
MunI	CAATTG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	3 cut(s)	141, 227, 236
NdeII	GATC	2 cut(s)	153, 302
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	2 cut(s)	7, 70
PcsI	WCGNNNNNNNCGW	1 cut(s)	292
PkrI	GCNGC	2 cut(s)	223, 238
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	94
PspEI	GGTNACC	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	171
PsuI	RGATCY	1 cut(s)	302
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SatI	GCNGC	2 cut(s)	222, 237
Sau3AI	GATC	2 cut(s)	153, 302
SchI	GAGTC	1 cut(s)	345
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	2 cut(s)	132, 286
SetI	ASST	4 cut(s)	80, 165, 187, 314
SfaNI	GCATC	1 cut(s)	208
Sse9I	AATT	1 cut(s)	225
SsiI	CCGC	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	94
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	353
TaiI	ACGT	1 cut(s)	80
TasI	AATT	1 cut(s)	225
TauI	GCSGC	1 cut(s)	239
TscAI	CASTG	1 cut(s)	137
TseFI	GTSAC	2 cut(s)	7, 70
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	2 cut(s)	7, 70
TspDTI	ATGAA	1 cut(s)	100
TspGWI	ACGGA	2 cut(s)	301, 360
TspRI	CASTG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.