Rh6AG308100

Early nodulin-like protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
50599712 .. 50606915
7204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG308100.1

Sequence Viewer

Length: 255 bp
ATGATTGTCAAAGTCTTGGGATCACCGGCTGCTGGAACAGAAAGCCCACCACCTGCTCAATCAGCAAACCAGAATGCAACTGAATCACCAGATCATCATGACATGAAGAACAATGCAGTTGGAATGCATGCTGTAGCTGCCATCTCTTTTACAAGTTCCTGGCAGCGACGATCTGAATTGTTCTACACCCAAAAGGATGTTGATGTTGTGAGGTCAGAGTGGGCTAAGTTTGTGATGAAGTATCATATTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.27

Weight (kDa)

6.9

Isoelectric Point (pI)

77.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 61
Acc36I ACCTGC 1 cut(s) 61
AclWI GGATC 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 32
AjnI CCWGG 1 cut(s) 158
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
AlwI GGATC 1 cut(s) 28
ApeKI GCWGC 3 cut(s) 29, 137, 163
AsuHPI GGTGA 2 cut(s) 15, 78
BbvI GCAGC 3 cut(s) 16, 124, 175
BccI CCATC 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 160
BfmI CTRYAG 1 cut(s) 132
BfuAI ACCTGC 1 cut(s) 61
BisI GCNGC 3 cut(s) 30, 138, 164
BlsI GCNGC 3 cut(s) 31, 139, 165
Bme1390I CCNGG 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse118I RCCGGY 1 cut(s) 25
BseBI CCWGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 1 cut(s) 32
BseXI GCAGC 3 cut(s) 16, 124, 175
BsiSI CCGG 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 32
BsmI GAATGC 2 cut(s) 79, 129
Bsp143I GATC 3 cut(s) 20, 91, 170
BspHI TCATGA 1 cut(s) 97
BspMI ACCTGC 1 cut(s) 61
BspPI GGATC 1 cut(s) 28
BsrFI RCCGGY 1 cut(s) 25
BssAI RCCGGY 1 cut(s) 25
BssMI GATC 3 cut(s) 20, 91, 170
Bst2UI CCWGG 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 1 cut(s) 225
BstF5I GGATG 1 cut(s) 202
BstKTI GATC 3 cut(s) 23, 94, 173
BstMBI GATC 3 cut(s) 20, 91, 170
BstMWI GCNNNNNNNGC 2 cut(s) 62, 137
BstNI CCWGG 1 cut(s) 160
BstNSI RCATGY 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 158
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 3 cut(s) 16, 124, 175
BtsCI GGATG 1 cut(s) 202
BveI ACCTGC 1 cut(s) 61
Cac8I GCNNGC 1 cut(s) 129
CciI TCATGA 1 cut(s) 97
Cfr10I RCCGGY 1 cut(s) 25
CviAII CATG 3 cut(s) 98, 103, 128
CviJI RGCY 4 cut(s) 29, 45, 137, 224
CviKI_1 RGCY 4 cut(s) 29, 45, 137, 224
DdeI CTNAG 1 cut(s) 225
DpnI GATC 3 cut(s) 22, 93, 172
DpnII GATC 3 cut(s) 20, 91, 170
EcoRII CCWGG 1 cut(s) 158
EcoT22I ATGCAT 1 cut(s) 129
FaeI CATG 3 cut(s) 101, 106, 131
FaiI YATR 5 cut(s) 99, 104, 129, 246, 253
FatI CATG 3 cut(s) 97, 102, 127
Fnu4HI GCNGC 3 cut(s) 30, 138, 164
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 3 cut(s) 30, 138, 164
GluI GCNGC 3 cut(s) 30, 138, 164
HapII CCGG 1 cut(s) 26
Hin1II CATG 3 cut(s) 101, 106, 131
HinfI GANTC 1 cut(s) 83
HpaII CCGG 1 cut(s) 26
HphI GGTGA 2 cut(s) 15, 78
Hpy188I TCNGA 2 cut(s) 175, 217
Hpy188III TCNNGA 1 cut(s) 98
Hpy99I CGWCG 1 cut(s) 171
HpyCH4V TGCA 4 cut(s) 77, 116, 127, 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 137
HpyF3I CTNAG 1 cut(s) 225
Hsp92II CATG 3 cut(s) 101, 106, 131
Kzo9I GATC 3 cut(s) 20, 91, 170
LpnPI CCDG 7 cut(s) 18, 39, 66, 83, 102, 145, 172
Lsp1109I GCAGC 3 cut(s) 16, 124, 175
MalI GATC 3 cut(s) 22, 93, 172
MboI GATC 3 cut(s) 20, 91, 170
MboII GAAGA 1 cut(s) 118
MluCI AATT 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 1 cut(s) 204
Mph1103I ATGCAT 1 cut(s) 129
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 160
Mva1269I GAATGC 2 cut(s) 79, 129
MvaI CCWGG 1 cut(s) 160
MwoI GCNNNNNNNGC 2 cut(s) 62, 137
NdeII GATC 3 cut(s) 20, 91, 170
NlaIII CATG 3 cut(s) 101, 106, 131
NsiI ATGCAT 1 cut(s) 129
NspI RCATGY 1 cut(s) 131
PaeI GCATGC 1 cut(s) 131
PagI TCATGA 1 cut(s) 97
PaqCI CACCTGC 1 cut(s) 61
PctI GAATGC 2 cut(s) 79, 129
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 3 cut(s) 31, 139, 165
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
SatI GCNGC 3 cut(s) 30, 138, 164
Sau3AI GATC 3 cut(s) 20, 91, 170
ScrFI CCNGG 1 cut(s) 160
SetI ASST 3 cut(s) 55, 139, 215
SfcI CTRYAG 1 cut(s) 132
SphI GCATGC 1 cut(s) 131
Sse9I AATT 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 158
TasI AATT 1 cut(s) 176
TfiI GAWTC 1 cut(s) 83
TseI GCWGC 3 cut(s) 29, 137, 163
TspDTI ATGAA 2 cut(s) 119, 251
XceI RCATGY 1 cut(s) 131
Zsp2I ATGCAT 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.